MC10g1008.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC10g1008.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 9382633 .. 9382815 (+)
Sequence length183
RNA-Seq ExpressionMC10g1008.1
SyntenyMC10g1008.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAGGTGGACCTTTATGTTAAACATCACTATGATTATATCAAGTACGAGATCGGGACCTGCTACAACGATTATCGACATCGCTTACATAGGTACTATCGTGATTTAAAAGATGCAGAAACGGCTCGACAACGACCCTATGGACAAATTACACCAGAAGTTTGGAATATGCTATGTGATAGA

mRNA sequence

TTTGAGGTGGACCTTTATGTTAAACATCACTATGATTATATCAAGTACGAGATCGGGACCTGCTACAACGATTATCGACATCGCTTACATAGGTACTATCGTGATTTAAAAGATGCAGAAACGGCTCGACAACGACCCTATGGACAAATTACACCAGAAGTTTGGAATATGCTATGTGATAGA

Coding sequence (CDS)

TTTGAGGTGGACCTTTATGTTAAACATCACTATGATTATATCAAGTACGAGATCGGGACCTGCTACAACGATTATCGACATCGCTTACATAGGTACTATCGTGATTTAAAAGATGCAGAAACGGCTCGACAACGACCCTATGGACAAATTACACCAGAAGTTTGGAATATGCTATGTGATAGA

Protein sequence

FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCDR
Homology
BLAST of MC10g1008.1 vs. NCBI nr
Match: XP_022159083.1 (uncharacterized protein LOC111025525 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 1.78e-12
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 1   FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCD 60
           F VD+   H + YI YEIGT + DYR +LHR+Y+  +D   ARQ+PY  I  E WN+LCD
Sbjct: 93  FAVDISQPHVHRYILYEIGTRFKDYRAKLHRHYKKSRDPARARQKPYKDIKQEXWNILCD 152

BLAST of MC10g1008.1 vs. NCBI nr
Match: XP_022153681.1 (uncharacterized protein LOC111021138 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 5.85e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 9  HHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCDR 61
          H + YI YEIGT + DYR +LHR+Y+  +D   ARQ+PY  I  E WN+LCDR
Sbjct: 14 HVHRYILYEIGTRFKDYRAKLHRHYKKSRDQAHARQKPYKDIKQEDWNILCDR 66

BLAST of MC10g1008.1 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 6.09e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1  FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCD 60
          F VD+   H + YI YEIGT + DYR +L+R+Y+ ++D   ARQ+PY  I  E WN+LCD
Sbjct: 6  FVVDISQPHVHRYILYEIGTRFKDYRAKLYRHYKKVRDLARARQKPYKDIKQEDWNILCD 65

BLAST of MC10g1008.1 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.32e-09
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 9  HHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCDR 61
          H + YI YEIGT + DYR +L+R+Y+ ++D   ARQ+PY  I  E WN+LCD+
Sbjct: 19 HVHRYILYEIGTRFKDYRAKLYRHYKKVRDLARARQKPYKDIKQEDWNILCDK 71

BLAST of MC10g1008.1 vs. NCBI nr
Match: KAF5186047.1 (hypothetical protein FRX31_024366 [Thalictrum thalictroides])

HSP 1 Score: 48.5 bits (114), Expect = 1.57e-04
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 1  FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDL-KDAETARQRPYGQITPEVWNMLC 60
          F++DL++ H    I   +G  + DYRH LH++Y+    D +T R+ PY  +  E W  +C
Sbjct: 9  FDIDLHLPHVQRAINKYLGQRFKDYRHTLHKHYKKFGNDDQTRRKTPYDNVGQEAWITIC 68

BLAST of MC10g1008.1 vs. ExPASy TrEMBL
Match: A0A6J1DXU5 (uncharacterized protein LOC111025525 OS=Momordica charantia OX=3673 GN=LOC111025525 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.60e-13
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 1   FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCD 60
           F VD+   H + YI YEIGT + DYR +LHR+Y+  +D   ARQ+PY  I  E WN+LCD
Sbjct: 93  FAVDISQPHVHRYILYEIGTRFKDYRAKLHRHYKKSRDPARARQKPYKDIKQEXWNILCD 152

BLAST of MC10g1008.1 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.83e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 9  HHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCDR 61
          H + YI YEIGT + DYR +LHR+Y+  +D   ARQ+PY  I  E WN+LCDR
Sbjct: 14 HVHRYILYEIGTRFKDYRAKLHRHYKKSRDQAHARQKPYKDIKQEDWNILCDR 66

BLAST of MC10g1008.1 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.95e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1  FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCD 60
          F VD+   H + YI YEIGT + DYR +L+R+Y+ ++D   ARQ+PY  I  E WN+LCD
Sbjct: 6  FVVDISQPHVHRYILYEIGTRFKDYRAKLYRHYKKVRDLARARQKPYKDIKQEDWNILCD 65

BLAST of MC10g1008.1 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.40e-10
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 9  HHYDYIKYEIGTCYNDYRHRLHRYYRDLKDAETARQRPYGQITPEVWNMLCDR 61
          H + YI YEIGT + DYR +L+R+Y+ ++D   ARQ+PY  I  E WN+LCD+
Sbjct: 19 HVHRYILYEIGTRFKDYRAKLYRHYKKVRDLARARQKPYKDIKQEDWNILCDK 71

BLAST of MC10g1008.1 vs. ExPASy TrEMBL
Match: A0A7J6VMR7 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_024366 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.60e-05
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 1  FEVDLYVKHHYDYIKYEIGTCYNDYRHRLHRYYRDL-KDAETARQRPYGQITPEVWNMLC 60
          F++DL++ H    I   +G  + DYRH LH++Y+    D +T R+ PY  +  E W  +C
Sbjct: 9  FDIDLHLPHVQRAINKYLGQRFKDYRHTLHKHYKKFGNDDQTRRKTPYDNVGQEAWITIC 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022159083.11.78e-1252.46uncharacterized protein LOC111025525 [Momordica charantia][more]
XP_022153681.15.85e-1154.72uncharacterized protein LOC111021138 [Momordica charantia][more]
XP_022143616.16.09e-1149.18uncharacterized protein LOC111013476 [Momordica charantia][more]
XP_022148911.11.32e-0950.94uncharacterized protein LOC111017461 [Momordica charantia][more]
KAF5186047.11.57e-0436.07hypothetical protein FRX31_024366 [Thalictrum thalictroides][more]
Match NameE-valueIdentityDescription
A0A6J1DXU58.60e-1352.46uncharacterized protein LOC111025525 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DLF12.83e-1154.72uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1CQT52.95e-1149.18uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1D6S96.40e-1050.94uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A7J6VMR77.60e-0536.07Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_024366 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC10g1008MC10g1008gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC10g1008.1-cdsMC10g1008.1-cds-MC10:9382633..9382815CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC10g1008.1MC10g1008.1-proteinpolypeptide