MC00g0369 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0369
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ABC transporter F family member 4-like
Location	scaffold7: 450912 .. 451054 (+)
RNA-Seq Expression	MC00g0369
Synteny	MC00g0369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTTCTGGTTAGTCATGATTCTCGGCTCATATCACGTGTCTGCGAGGAGTCTAGGACGAAGAAAAAAGTGAAATTTGGATTGTCGAAAATGGTACCGTGGAGTCGTTCCCTGGAACTTTTGAGGAATACAAGGAAAAACTG

mRNA sequence

ATTGTTCTGGTTAGTCATGATTCTCGGCTCATATCACGTGTCTGCGAGGACGAAGAAAAAAGTGAAATTTGGATTGTCGAAAATGGTACCGTGGAGTCGTTCCCTGGAACTTTTGAGGAATACAAGGAAAAACTG

Coding sequence (CDS)

ATTGTTCTGGTTAGTCATGATTCTCGGCTCATATCACGTGTCTGCGAGGACGAAGAAAAAAGTGAAATTTGGATTGTCGAAAATGGTACCGTGGAGTCGTTCCCTGGAACTTTTGAGGAATACAAGGAAAAACTG

Protein sequence

IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL

Homology

[Close]

BLAST of MC00g0369 vs. ExPASy Swiss-Prot
Match: Q9M1H3 (ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 46
           +VLVSHDSRLISRVC +EEKS+IW+VE+GTV  FPGTFEEYKE L
Sbjct: 669 VVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713

[Close]

BLAST of MC00g0369 vs. ExPASy Swiss-Prot
Match: Q9USH9 (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 8.6e-05
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 46
           +V ++HD RLI +V E     EIWIV+NGTV+ F G   +YK  L
Sbjct: 762 VVFITHDFRLIDQVAE-----EIWIVQNGTVKEFDGEIRDYKMML 801

[Close]

BLAST of MC00g0369 vs. ExPASy Swiss-Prot
Match: Q8K268 (ATP-binding cassette sub-family F member 3 OS=Mus musculus OX=10090 GN=Abcf3 PE=1 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 9.5e-04
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 46
           ++LVSHD R I  VC+     E+W+ ENG+V    G F++Y+  L
Sbjct: 660 VILVSHDERFIRLVCK-----ELWVCENGSVTRVEGGFDQYRALL 699

[Close]

BLAST of MC00g0369 vs. NCBI nr
Match: PIN19066.1 (hypothetical protein CDL12_08259 [Handroanthus impetiginosus])

HSP 1 Score: 86.7 bits (213), Expect = 6.37e-21
Identity = 39/45 (86.67%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISRVCEDEE+S+IW+VENGTVESFPG+FEEYKE+L
Sbjct: 18 VVLVSHDSRLISRVCEDEERSQIWVVENGTVESFPGSFEEYKEEL 62

[Close]

BLAST of MC00g0369 vs. NCBI nr
Match: XP_022158213.1 (ABC transporter F family member 4-like [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.42e-19
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
           +VLVSHDSRLISRVCEDEEKSEIW+VENGTVESFPGTFEEYKE+L
Sbjct: 675 VVLVSHDSRLISRVCEDEEKSEIWVVENGTVESFPGTFEEYKEEL 719

[Close]

BLAST of MC00g0369 vs. NCBI nr
Match: PQQ20943.1 (ABC transporter F family member 4 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 81.6 bits (200), Expect = 5.38e-19
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISR+CEDEEKSEIW+VE GTV +FPGTF+EYKE L
Sbjct: 14 VVLVSHDSRLISRMCEDEEKSEIWVVEEGTVRAFPGTFQEYKELL 58

[Close]

BLAST of MC00g0369 vs. NCBI nr
Match: XP_022157860.1 (ABC transporter F family member 4-like [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 6.75e-19
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
           +VLVSHDSRLISR CEDEEKSEIW+VENGTVESFPGTFEEYKE+L
Sbjct: 675 VVLVSHDSRLISRXCEDEEKSEIWVVENGTVESFPGTFEEYKEEL 719

[Close]

BLAST of MC00g0369 vs. NCBI nr
Match: KAG6595451.1 (ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 9.19e-19
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1    IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
            +VLVSHDSRLISRVCEDEEKSEIW+VENGTVE FPGTFEEYKE+L
Sbjct: 986  VVLVSHDSRLISRVCEDEEKSEIWVVENGTVEFFPGTFEEYKEEL 1030

[Close]

BLAST of MC00g0369 vs. ExPASy TrEMBL
Match: A0A2G9HNF6 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08259 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.08e-21
Identity = 39/45 (86.67%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISRVCEDEE+S+IW+VENGTVESFPG+FEEYKE+L
Sbjct: 18 VVLVSHDSRLISRVCEDEERSQIWVVENGTVESFPGSFEEYKEEL 62

[Close]

BLAST of MC00g0369 vs. ExPASy TrEMBL
Match: A0A6J1DVG6 (ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC111024749 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.88e-20
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
           +VLVSHDSRLISRVCEDEEKSEIW+VENGTVESFPGTFEEYKE+L
Sbjct: 675 VVLVSHDSRLISRVCEDEEKSEIWVVENGTVESFPGTFEEYKEEL 719

[Close]

BLAST of MC00g0369 vs. ExPASy TrEMBL
Match: A0A803R2K4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.15e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISRVCEDEEKSEIW+VE+GTV +FPGTF+EYKE L
Sbjct: 35 VVLVSHDSRLISRVCEDEEKSEIWVVEDGTVRNFPGTFKEYKEDL 79

[Close]

BLAST of MC00g0369 vs. ExPASy TrEMBL
Match: A0A803R2K3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.15e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISRVCEDEEKSEIW+VE+GTV +FPGTF+EYKE L
Sbjct: 35 VVLVSHDSRLISRVCEDEEKSEIWVVEDGTVRNFPGTFKEYKEDL 79

[Close]

BLAST of MC00g0369 vs. ExPASy TrEMBL
Match: A0A803R2K5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.15e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 45
          +VLVSHDSRLISRVCEDEEKSEIW+VE+GTV +FPGTF+EYKE L
Sbjct: 35 VVLVSHDSRLISRVCEDEEKSEIWVVEDGTVRNFPGTFKEYKEDL 79

[Close]

BLAST of MC00g0369 vs. TAIR 10
Match: AT3G54540.1 (general control non-repressible 4 )

HSP 1 Score: 80.1 bits (196), Expect = 5.0e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 46
           +VLVSHDSRLISRVC +EEKS+IW+VE+GTV  FPGTFEEYKE L
Sbjct: 669 VVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713

[Close]

BLAST of MC00g0369 vs. TAIR 10
Match: AT1G64550.1 (general control non-repressible 3 )

HSP 1 Score: 40.0 bits (92), Expect = 5.7e-04
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 1   IVLVSHDSRLISRVCEDEEKSEIWIVENGTVESFPGTFEEYKEKL 46
           I +VSHD  LIS   +     E+W+V +G +  F GTF +YK+ L
Sbjct: 672 ICMVSHDEHLISGSVD-----ELWVVSDGRIAPFHGTFHDYKKLL 711

The following BLAST results are available for this feature:

BLAST of MC00g0369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1H3	7.0e-15	80.00	ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 ...	[more]
Q9USH9	8.6e-05	48.89	Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyc...	[more]
Q8K268	9.5e-04	42.22	ATP-binding cassette sub-family F member 3 OS=Mus musculus OX=10090 GN=Abcf3 PE=...	[more]

BLAST of MC00g0369 vs. NCBI nr


Match Name	E-value	Identity	Description
PIN19066.1	6.37e-21	86.67	hypothetical protein CDL12_08259 [Handroanthus impetiginosus]	[more]
XP_022158213.1	1.42e-19	93.33	ABC transporter F family member 4-like [Momordica charantia]	[more]
PQQ20943.1	5.38e-19	82.22	ABC transporter F family member 4 [Prunus yedoensis var. nudiflora]	[more]
XP_022157860.1	6.75e-19	91.11	ABC transporter F family member 4-like [Momordica charantia]	[more]
KAG6595451.1	9.19e-19	91.11	ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC00g0369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9HNF6	3.08e-21	86.67	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08259 P...	[more]
A0A6J1DVG6	6.88e-20	93.33	ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A803R2K4	1.15e-19	84.44	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R2K3	1.15e-19	84.44	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R2K5	1.15e-19	84.44	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MC00g0369 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54540.1	5.0e-16	80.00	general control non-repressible 4	[more]
AT1G64550.1	5.7e-04	42.22	general control non-repressible 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 1..45
None	No IPR available	PANTHER	PTHR19211:SF115	BNAA06G39310D PROTEIN	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0369.1	MC00g0369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding