MC08g1121 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1121
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	MC08: 9376108 .. 9378750 (+)
RNA-Seq Expression	MC08g1121
Synteny	MC08g1121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTAAAAAAGTTAGTGAGAGAAAGCAGAGTTTAAATTTGGGCTCTGCTACGCCTTAGGCAAGGTCTTGGGCCTGGGCCGGGCCGTAAAATCTCTCTTAAATGGGTTTGGACTCATACCCGACCCGACCCGACCCGACTTATCTTCCAGCTCCTCCGATTAAGAAGAAATACAGATAGCAGCTTCTTCTTGCTCTTCTTCTTCTTGAATTTCTCCTTTTATCTCAGAAACAGAGTCACCATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTCCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTATTTTTCTGGATTTAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGGTATCTCTCTTCTCACCCATATGCTTGTTCTGTTTAGTGAGCTGAAATTAATTCTTGTTTTGTTTACTTGATTGGGGTTGTTCAAAACTTGGGGGAGAGCAAGGGGAAGTTTAGTAAAGAAACAGCATCATTGTTGTTAAGTTAATGGAGAGAGGGACGGATTAAATTGGTGAACTTGGTTTGTCTTCCTCCATCTCTGGTATAGAACTCGGTTAGTTGAAACCTTGTCGTATTTATTGAAACTGTACCACGAAAACACTTGAATTCTTTGAAACCCAATTGCCCACTATAATTTGGTTCGTGGAGTAGACTTATTATTTCTATACAATGATGAAAGGTGTGATGTAAACGAATGCTCTGTGAGTTACATTTGAGGAAAATACTAATGAGAATGCTGGTGTTGATTTTGATGAAAACCTAAATGATAACTAAATTTCGAATGAACATATGGAAGAAGATCAATTCTAACCCTCTAGTTAGATGATTGAGGCAACTTTAACCTTAAAATGTTAAATCTCATTAACTGAGCCTTATGTTTGAATAAACAATGAATTAATACCATCGTTGGTTGAGTTGCTATTTCCTTTAGGTTTGTGGTTAGATGTGTGCGTTGTTGTGATGGGAATTGGGATGTGTTATTTTTGTGAATGGTCATTTTTATTGTTGGCTTCAGCAATTCTTTTGGTTGGATTTGGATGCTTTGGTGTTGGGTTGCAGGTATGTCTTTGGTTGTTTGACTTTGTGACTGGATTTGGGTGTCTCATCGCTGAGTTTGGTATTTTGTAGTTGAAAAATTTGAGTGCTTTACTTTCTGAATTTTGAGTGATTTCTTGGTTGCCTTCTTAGCAATTTTTTAGTTTGATTTTGAGGAGGATGTTAACTTCACCAATTATTCAAGTTTGGGACTTAATTTCATGAATCAAGAACTTTAAGATTAAAATTAACTCACCTAGCTAAGTTCACGTGGAATTTTTTTTTTTAAGGGGATGTTTTTAGTTGTTGTTAAGCTTAGGTCTATGAAGTGTAAGATTGGGAAGCTTAGATTTGTTTAATTTGTATTTAGATTTTGCTAAAGAACAAGTTATAAATTTTGCATAGAGTACCTTTGGTTCAATTTCAAAAGGTGGTTTTATAGTTTGGATTTATGTAACTCATGGAATTAGCAAATTCATAACCTAGAATAAGACTTATAACTTGGATATACGAGTAAGCTCACATACTAAATATAGGCTTACCTCTTGACGTTGAGCTGCACAAATCTAACTTGTGTGTCAAACACGTCTTTTATGTAACACAATACAATATTTAGAACAACTCTAATGATAAATATTTTTTAAAACAAACCCATGCAGTAATCATATTATTTCTCCTGATCTTTACTTTACCGATATTAGAGTCTTAGAGAAAATCTCCCTCTCTTTGCATCAATGTCAAATACTGATTTTATAACAGAGAATTTCTTTGTTATTCTCATTATTTTTATGTAGCAAAATGCAAAGATAATTTGGATTTTGATTTTATAGTTCCCTTTTGCTTATACAAATGAAATGTTGAGCAAAATAGATTTATTATGGAGGTCTCATGCAAAATAAATGTTCACTTTTTGATGTTGTAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGGTTGAGCTCAAATGTAAAAAGTTTCAGGAATTTTTTATAGTTGTCTTAGATTGTGACTATTCTTGAATCCTACGGCTGTTCTGCTGTTCTTTTTCGACTGTTATGAAGTAATATTATAAATCATTTATCTTTTGTTGTATATTTTATTAATTATGTAAGCCATCTAAAGTTAGTATTTCCA

mRNA sequence

GTATTAAAAAAGTTAGTGAGAGAAAGCAGAGTTTAAATTTGGGCTCTGCTACGCCTTAGGCAAGGTCTTGGGCCTGGGCCGGGCCGTAAAATCTCTCTTAAATGGGTTTGGACTCATACCCGACCCGACCCGACCCGACTTATCTTCCAGCTCCTCCGATTAAGAAGAAATACAGATAGCAGCTTCTTCTTGCTCTTCTTCTTCTTGAATTTCTCCTTTTATCTCAGAAACAGAGTCACCATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTCCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTATTTTTCTGGATTTAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGGTTGAGCTCAAATGTAAAAAGTTTCAGGAATTTTTTATAGTTGTCTTAGATTGTGACTATTCTTGAATCCTACGGCTGTTCTGCTGTTCTTTTTCGACTGTTATGAAGTAATATTATAAATCATTTATCTTTTGTTGTATATTTTATTAATTATGTAAGCCATCTAAAGTTAGTATTTCCA

Coding sequence (CDS)

ATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTCCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTATTTTTCTGGATTTAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGGTTGA

Protein sequence

MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHSHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLG

Homology

[Close]

BLAST of MC08g1121 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 115/201 (57.21%), Postives = 135/201 (67.16%), Query Frame = 0


Query: 2   MLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHS 61
           MLSMAV  QPNIN     S + +   + KPF        +T A  +  P  S+ S     
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPF--------KTPAFANPKPFFSSPS----- 60

Query: 62  HYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPMEK 121
             FS  + +++N  +L V AP   ++     +E  + DD        KEKL V+VKPM+K
Sbjct: 61  --FS--QLKKKNNWSLFV-APETISDVAIMGNEVDIDDD----LLVNKEKLKVLVKPMDK 120

Query: 122 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 181
            RLVLKFIWMEKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQM
Sbjct: 121 PRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQM 177

Query: 182 IILLNQATDIINLWQQGGGNL 203
           IILLNQATDIINLWQQ GGNL
Sbjct: 181 IILLNQATDIINLWQQSGGNL 177

[Close]

BLAST of MC08g1121 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 93/169 (55.03%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 41  RTTASYSLSPSSSTSSCIAHSHYFSGFKFRRQNFRNLEVSAPAAATEAVEA-------AS 100
           R   S     + S+SS + H       K RR   R+L     AAA  AVEA         
Sbjct: 17  RPRVSLPRPSTPSSSSSLVH------LKSRRPPLRSLRSLTAAAAAAAVEAGEPYFGLGD 76

Query: 101 ESPVVDDSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSP 160
           + P+  + D+ +    E+  V V   +   LVLKFIWMEKNIGIALDQM+PG G+IPLSP
Sbjct: 77  DEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSP 136

Query: 161 YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           YYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L
Sbjct: 137 YYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSL 179

[Close]

BLAST of MC08g1121 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 92/163 (56.44%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S   S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P  ++   VVKP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of MC08g1121 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-38
Identity = 99/201 (49.25%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 5   MAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHSHYF 64
           MAVQ   + +F   T++ P+Q  +SKP           + S  L PSS  S  ++ S + 
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPI-------AHISLSTKLKPSSRPS--LSCSTWN 60

Query: 65  SGFKFRRQNFRNLEVSA--PAAATEAVE-AASESPVVDDSDSVSSPVKEKLGVVVKPMEK 124
            G    R +  N  + A  P+  T + E   SESP +          K+K+ V+VKP+EK
Sbjct: 61  QGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLG---------KKKMRVLVKPLEK 120

Query: 125 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 184
            ++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   
Sbjct: 121 PKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHR 180

Query: 185 IILLNQATDIINLWQQGGGNL 203
           + LLNQATDIINLWQ  GG+L
Sbjct: 181 VFLLNQATDIINLWQSSGGDL 182

[Close]

BLAST of MC08g1121 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-22
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 122 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 181
           S+  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  
Sbjct: 2   SKFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDR 61

Query: 182 IILLNQATDIINLWQQGG 200
           I LLN+ T++IN WQ+ G
Sbjct: 62  IELLNKTTEVINYWQEEG 78

[Close]

BLAST of MC08g1121 vs. NCBI nr
Match: XP_022148098.1 (30S ribosomal protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 404 bits (1038), Expect = 4.86e-142
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
           SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLG 203
           MIILLNQATDIINLWQQGGGNLG
Sbjct: 181 MIILLNQATDIINLWQQGGGNLG 203

[Close]

BLAST of MC08g1121 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (818), Expect = 1.54e-108
Identity = 166/202 (82.18%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNTS F + NATSKP+QV F +KQRTTA  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTALSS--PSSSISSCIAD 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGSL 200

[Close]

BLAST of MC08g1121 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 316 bits (809), Expect = 2.74e-107
Identity = 163/202 (80.69%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFC NTSNF AQ ATSKPFQV F VKQR+T+S          SCI +
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSS----------SCITN 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            H  S  K R QNFR L++SA A A EA EAA ES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  LHSVSASKLRHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 192

[Close]

BLAST of MC08g1121 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 315 bits (806), Expect = 1.04e-106
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNTS F + NATSKP QV F +KQRT A  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSS--PSSSISSCIAD 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +  SG K RRQ+F+ L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGSL 200

[Close]

BLAST of MC08g1121 vs. NCBI nr
Match: KAG6607038.1 (30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315 bits (807), Expect = 1.32e-106
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN NFCLNT  F + NATSKP+Q+ F +KQRTTA  S  PSSS SSCIA 
Sbjct: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSS--PSSSISSCIAD 77

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 78  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 137

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 138 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 197

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGG+L
Sbjct: 198 MIILLNQATDIINLWQQGGGSL 217

[Close]

BLAST of MC08g1121 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 2.35e-142
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
           SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLG 203
           MIILLNQATDIINLWQQGGGNLG
Sbjct: 181 MIILLNQATDIINLWQQGGGNLG 203

[Close]

BLAST of MC08g1121 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 315 bits (806), Expect = 5.02e-107
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNTS F + NATSKP QV F +KQRT A  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSS--PSSSISSCIAD 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +  SG K RRQ+F+ L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGSL 200

[Close]

BLAST of MC08g1121 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 1.05e-106
Identity = 165/202 (81.68%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN++FC NTSNF AQ A SKPFQ+ F VKQRTTAS          SCI +
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTAS----------SCIPN 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            H   G K RRQN R  E+SA A +TEAVEAASES V DDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  FHSVFGLKLRRQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 191

[Close]

BLAST of MC08g1121 vs. ExPASy TrEMBL
Match: A0A6J1GBD3 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452451 PE=3 SV=1)

HSP 1 Score: 313 bits (801), Expect = 2.90e-106
Identity = 163/202 (80.69%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAV L PN NFCLNTS F + NATSKP+Q+ F +KQRTTA  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSS--PSSSISSCIAD 60

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGSL 200

[Close]

BLAST of MC08g1121 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 310 bits (795), Expect = 3.60e-105
Identity = 163/202 (80.69%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFC NTSNF AQ A SKPF++ F V+QRTTAS          SCI +
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTAS----------SCIPN 81

Query: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            H   G + RRQNFR  E+SA AA  EAVEAASE  V DDSDSVSSPVKEKLGVVVKPME
Sbjct: 82  FHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPME 141

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 142 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 201

Query: 181 MIILLNQATDIINLWQQGGGNL 202
           MIILLNQATDIINLWQQGGGNL
Sbjct: 202 MIILLNQATDIINLWQQGGGNL 212

[Close]

BLAST of MC08g1121 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-40
Identity = 92/163 (56.44%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S   S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P  ++   VVKP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of MC08g1121 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-39
Identity = 90/163 (55.21%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S   S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P +      +KP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTPQQ-----TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 160

[Close]

BLAST of MC08g1121 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39
Identity = 99/201 (49.25%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 5   MAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHSHYF 64
           MAVQ   + +F   T++ P+Q  +SKP           + S  L PSS  S  ++ S + 
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPI-------AHISLSTKLKPSSRPS--LSCSTWN 60

Query: 65  SGFKFRRQNFRNLEVSA--PAAATEAVE-AASESPVVDDSDSVSSPVKEKLGVVVKPMEK 124
            G    R +  N  + A  P+  T + E   SESP +          K+K+ V+VKP+EK
Sbjct: 61  QGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLG---------KKKMRVLVKPLEK 120

Query: 125 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 184
            ++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   
Sbjct: 121 PKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHR 180

Query: 185 IILLNQATDIINLWQQGGGNL 203
           + LLNQATDIINLWQ  GG+L
Sbjct: 181 VFLLNQATDIINLWQSSGGDL 182

The following BLAST results are available for this feature:

BLAST of MC08g1121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	1.1e-46	57.21	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	2.9e-39	55.03	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9SX22	3.7e-39	56.44	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
Q9LFV0	3.2e-38	49.25	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
P51351	3.2e-22	57.69	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of MC08g1121 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148098.1	4.86e-142	100.00	30S ribosomal protein 3, chloroplastic-like [Momordica charantia]	[more]
XP_023522262.1	1.54e-108	82.18	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038875586.1	2.74e-107	80.69	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]
XP_022997676.1	1.04e-106	81.19	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
KAG6607038.1	1.32e-106	81.19	30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of MC08g1121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D356	2.35e-142	100.00	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	5.02e-107	81.19	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CF24	1.05e-106	81.68	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1GBD3	2.90e-106	80.69	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0L9T8	3.60e-105	80.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]

BLAST of MC08g1121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68590.1	2.6e-40	56.44	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	1.3e-39	55.21	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	2.2e-39	49.25	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 151..197 e-value: 1.1E-26 score: 92.7
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..202
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 123..201 e-value: 3.1E-33 score: 115.7
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1121.1	MC08g1121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome