Tan0002400 (gene) Snake gourd v1

Overview


Name	Tan0002400
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG11: 56725595 .. 56725906 (-)
RNA-Seq Expression	Tan0002400
Synteny	Tan0002400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAAAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATTGCATTGAAAGGCTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTCATTGAGAAGTGCTTTAGGGTCATGTGA

mRNA sequence

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAAAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATTGCATTGAAAGGCTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTCATTGAGAAGTGCTTTAGGGTCATGTGA

Coding sequence (CDS)

ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAAAGGGAGAGTCTAGTCATCCTCAGCAAGAGGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAAAGAAGTATTGCATTGAAAGGCTGAAAGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTCATTGAGAAGTGCTTTAGGGTCATGTGA

Protein sequence

MARGGKRGRQVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

Homology

[Close]

BLAST of Tan0002400 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-20
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 40  MEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKC 99
           ME+++F RITQRLA SVGS Q DPEKK+ IERLKALGATTF+GTTDP DAE+WL LIEKC
Sbjct: 1   MEDRVFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWLGLIEKC 60

Query: 100 FRVM 104
           F+VM
Sbjct: 61  FKVM 64

[Close]

BLAST of Tan0002400 vs. NCBI nr
Match: WP_217833179.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 26 VSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEGTTD 85
          +S+GESSHPQ EVN+EEQ+FTRI QRLA S+GS ++DPEKKY IERLKALGATTFEGT D
Sbjct: 1  MSEGESSHPQAEVNVEEQLFTRIAQRLAASIGSVESDPEKKYSIERLKALGATTFEGTVD 60

Query: 86 PADAE 91
          P +AE
Sbjct: 61 PVEAE 65

[Close]

BLAST of Tan0002400 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     +T         G   S  ESS P  E NMEEQ+  R+ QRL   + SA
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY IERLKALGATTF GTT+PADAE WL LIEKCFRV
Sbjct: 80  QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRV 122

[Close]

BLAST of Tan0002400 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-18
Identity = 56/103 (54.37%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

[Close]

BLAST of Tan0002400 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-18
Identity = 56/103 (54.37%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

[Close]

BLAST of Tan0002400 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     +T         G   S  ESS P  E NMEEQ+  R+ QRL   + SA
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY IERLKALGATTF GTT+PADAE WL LIEKCFRV
Sbjct: 80  QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRV 122

[Close]

BLAST of Tan0002400 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-18
Identity = 56/103 (54.37%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

[Close]

BLAST of Tan0002400 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-18
Identity = 56/103 (54.37%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 1   MARGGKRGR-QVETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSA 60
           M RG  R     E          G   S  ESS P+ E N+EEQ+  R+ QRL   + SA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QADPEKKYCIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV 103
           Q+DPEKKY  ERLKALGATTF GTT+P D E WL LIEKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

[Close]

BLAST of Tan0002400 vs. ExPASy TrEMBL
Match: A0A5A7SKG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00920 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 12  ETGTQEATGDRGREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIER 71
           E GT +AT    RE + G+S+H   + NMEE+IF +I QRLA+ V  AQAD EKKY IER
Sbjct: 81  EFGTCKATRS-PREFTVGDSNHSLAQENMEERIFNKIAQRLADGVRLAQADLEKKYGIER 140

Query: 72  LKALGATTFEGTTDPADAEVWLNLIEKCFRVM 104
           +KALGAT F+GT D  + E WL LIEKCF VM
Sbjct: 141 MKALGATPFKGTVDSVEVEAWLTLIEKCFWVM 171

[Close]

BLAST of Tan0002400 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 23  GREVSKGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEKKYCIERLKALGATTFEG 82
           G   S  ESS P  E N+EEQ+  R+ QRL   +  AQ+D EKKY IERLKALGATTF G
Sbjct: 24  GSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVG 83

Query: 83  TTDPADAEVWLNLIEKCFRV 103
           TT+P DAE WL LIEKCF+V
Sbjct: 84  TTNPVDAEEWLTLIEKCFKV 103

The following BLAST results are available for this feature:

BLAST of Tan0002400 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896416.1	5.5e-20	78.13	uncharacterized protein LOC120084680 [Benincasa hispida]	[more]
WP_217833179.1	1.6e-19	76.92	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KAA0035225.1	1.6e-19	58.25	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0036813.1	5.2e-18	54.37	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	5.2e-18	54.37	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Tan0002400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DES5	7.8e-20	58.25	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	2.5e-18	54.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	2.5e-18	54.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7SKG0	1.2e-17	58.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SJ99	2.8e-17	62.50	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0002400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002400.1	Tan0002400.1	mRNA