Tan0007183 (gene) Snake gourd v1

Overview
NameTan0007183
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein, putative, unclassified
LocationLG11: 44298458 .. 44301080 (+)
RNA-Seq ExpressionTan0007183
SyntenyTan0007183
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGTATTTTATAAATCATAGCATGATGACACGCGCCAATAAGGTCAGTATCACTCACCTCCCTTTTCATTCTTCTGATCATAAACATATCCTTGCTCACTTACATTTTGATGGTCTGGATTTTATTTCTAAGAATCAACCCTTCGAGGAGGCTAGGGATATTGTTAAAAAACACTGGAAAGACAGAGTTTGTAACAATTCTAGGGGCATTGAGGATAAACTCTTCCACTTCCTTAAAAAGTTGAAGAAATGGGATAGGATGAGACTTAAAGGGTCCATTTGGGAGGCTATAAAGAATAAGGAGAATCAAATTGCTAGATTGACTAATCTCCCTAATCACTCCACGCTGAGTGAGCTCACTAAGGCTGAGAATGATTTAGAAGAGCTTCTGTTAGAAGAGGAAAAGTATTGGAAGATCAGATCTAGGAAAGATTGGCTCAAATGGGGTGATAAAAATGCTAAATGGTTTCACCATAAAGCCAACCAGAGGAGAAAAGGTAACAAAATCCAGAAGATTCTTGACTCTAATGGCACCTGGGCTACCAAAAATGAGGAAATTGGAAATGTTGCAACCAACTACTTTATCAATATTTTCAAATCTACCGAGCCTTCCCCCTTGGATATGGATCAGGCCTTAGTAGGTCTTGATAAGAAACTCAACGAGATTCAACTCGGGTGGCTGAGGAGGCCTTTTACTCCCAAAGAGATTGAGGATGTTGTTGGTGAAATGGGTACTTGTAAGGCCCCAGGTCCTGATGGTTGTCACGCCATGTTCTACCAAGGGTACTAGGACATTGTGGGTGATGAAACCAAGGTTATTTGCCTGAATATCTTGAATCAGGGGACGGGTGTTGATAAGATAAACAAAACTCTTCTGGTTCTCATTCCCAAGTGTAAGCAGGCTAACCGAATGGAGGATTTTGGACCCATTAGCCTATGTAATGTGCTTTATAAGATTGTAGCAAAAGGCAATAGTTAATAGGCTCAAAAAGATCATGGACTCATTAATCTCATCTCACCAGTCTGCCTTTGTTCCCAGAAGGCTCATTACGGATAATGTTATAATTGGATTTGTATGCATCCAAGCGATATCAACGTCTAGGAATATTGGGAACGGGAAGGTGGCTCTCAAGCTCGATATGAGTAAAGCCTATGACCGAGTTGAATGGGCTTTCCTCTGCAAGGTTATGGTTAAAATGGGTTTCGAGGAGAGATGGGTCAATATCATTATGGGTGGTGTGGAGTCAGTCTCTTTTTCAGTGCTTATCAATGGAATCCCTCAAAAAGAATTCAAACCAAATAGGGGCCTCAGACAAGGGGACCCCTATCCCCATTCTTATTCCTGCTTTGCGCAGAGGGGCTCTCTACTATCCTTAAAAGAGAAGAAGAGCAAAATAGGATTCACGGTCTAAAAATCAACAGCTTTTGTCCCCCCATAACTCATCTTTTCTTTGCAGATGACAGCTTACTATTCTTCAGAGCCACAAGAGAGGAATGTTCAACCATTAAGGAAGCTTTTGCGCTTTATGAGAAAGCCTCTGGGCAAACTATAAACTTCAACAAGTCGGCTTTCATGACTGATAAACTGGTTAGAAGGGATGTGGCTTCCTGTATTGAGGAAATTATGGGAGTAAAACAAGTCGATAATCTTGGCCATTATTTGGGCATGCCTTCCCAGACCTTGAGAAACAAAAGTAATCTTTTCAAGAAAATTAGGGACAAAGTTGGGAAGGTGCTCCAAGGCTGGAAAGGTAGCCTTTTCTCTTCAAGTGGAAAAGAAATCCTCATTATATTCCCAACTATACCATGAGTTTTTTTAGAATCCCTAAGGCTTTATGCAAGGTGATTAATCAGTTTTGTGCTAGGTTTTGGTGGGGGGGAAGTTGGCACTAAAAGAAAGCTCCACTGGATTGGATGGGATAATCTTTGTAAAAGCAAAGAGAAAGGGGGTTGGGATTTAGGGATCTTGAGAAATTCAATCAAGCTATGCTGGCAAAAATTAGTTGGTGTAACATTAGAAACCCGGAGAGCTTGATGGCTAAAGTTCTTAAAGAGCGGTATTTTAGGGATGGGAACTTCCTAAAGGCCCCTATTGGATCCAACCCTTTTTTATATGGAGAAGCATCGTTTGGGGCAGAGACCTTTTCGAAAAAGGGTACAGATGGAGAATTGGGGATGGTAGGCATATTAATATTAAAGAAAACCCTTGGATAGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG

mRNA sequence

ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG

Coding sequence (CDS)

ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG

Protein sequence

MAINIRGGRVGNATREHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAKMGA
Homology
BLAST of Tan0007183 vs. NCBI nr
Match: KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 18  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKD 77
           + ++GL   VLV E L   RV +++  DG+W EE+I   F    +  IIN PL     KD
Sbjct: 35  IPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKD 94

Query: 78  EIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAKM 134
           +I WG DPK  F +KS Y +A +   +  +  S+ +   K    +W +K+LP AK+
Sbjct: 95  DIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKI 150

BLAST of Tan0007183 vs. NCBI nr
Match: XP_030507775.1 (uncharacterized protein LOC115722655 [Cannabis sativa])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 37  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYH 96
           ++S  + D G W    +++ F   D +DI+N P+     KDE+IW +   G F++KSAYH
Sbjct: 615 KLSFFISDSGCWDSRKLRQYFFESDVQDILNVPITGFSGKDELIWSRAGSGLFTVKSAYH 674

Query: 97  LATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK 133
           LA ++   PS+  S      KFWN++W +K+ P  K
Sbjct: 675 LALSYQDIPST--SSDTNSRKFWNKVWYSKAPPKIK 708

BLAST of Tan0007183 vs. NCBI nr
Match: XP_030502714.1 (uncharacterized protein LOC115717884 [Cannabis sativa])

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-10
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 37  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYH 96
           ++S  + D G W    ++  F   D +DI+  P+     KD+IIW ++  G F++KSAYH
Sbjct: 712 KLSFFISDSGYWDSTKLRNHFYESDIQDILEVPITGFSGKDDIIWSRESSGLFTVKSAYH 771

Query: 97  LATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK 133
           LA +    PSS  S      KFWN++W +++ P  K
Sbjct: 772 LALSTQDIPSS--SSAVNSRKFWNKIWHSQAPPKIK 805

BLAST of Tan0007183 vs. NCBI nr
Match: CAH66131.1 (OSIGBa0135L04.5 [Oryza sativa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 18  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKD 77
           L R   +RP+ V      K V+D++  DG+W E+V+K  F  +D E I+   L  +  +D
Sbjct: 181 LPRNHSRRPITVRGNCRTKWVADLMGVDGTWDEQVVKRIFWPMDAELILTIRLSARAEED 240

Query: 78  EIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWK 125
            + W  D  G FS++SAY LA       +  GS   E +K WN +WK
Sbjct: 241 FLAWHPDKWGVFSVRSAYKLALQLAAIDNGSGSSEAETSKAWNLVWK 287

BLAST of Tan0007183 vs. NCBI nr
Match: XP_025877668.1 (uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] >BAF29216.2 Os12g0156200 [Oryza sativa Japonica Group])

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09
Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0

Query: 9    RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDF 68
            RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD 
Sbjct: 1056 RVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDA 1115

Query: 69   EDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQL 127
            E I+N  +  +  +D I W  D  G FS++SAY LA        S  S      K W  +
Sbjct: 1116 EVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMI 1175

BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: A0A5A7SLW3 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 18  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKD 77
           + ++GL   VLV E L   RV +++  DG+W EE+I   F    +  IIN PL     KD
Sbjct: 35  IPQEGLGGLVLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKD 94

Query: 78  EIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAKM 134
           +I WG DPK  F +KS Y +A +   +  +  S+ +   K    +W +K+LP AK+
Sbjct: 95  DIFWGSDPKDNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKI 150

BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: A0A803QDP2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 53  IKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDV 112
           +++ F   D +DI+N P+     KDE+IW +D  G F++KSAYHLA +H   PS+  S V
Sbjct: 21  LRQYFFESDVQDILNVPITGFSGKDELIWSRDGSGLFTVKSAYHLALSHQDIPST--SSV 80

Query: 113 REGTKFWNQLWKAKSLPGAK 133
               KFWN++W +K+ P  K
Sbjct: 81  TNSRKFWNKVWHSKAPPKIK 98

BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: Q01M84 (OSIGBa0135L04.5 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135L04.5 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 18  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKD 77
           L R   +RP+ V      K V+D++  DG+W E+V+K  F  +D E I+   L  +  +D
Sbjct: 181 LPRNHSRRPITVRGNCRTKWVADLMGVDGTWDEQVVKRIFWPMDAELILTIRLSARAEED 240

Query: 78  EIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWK 125
            + W  D  G FS++SAY LA       +  GS   E +K WN +WK
Sbjct: 241 FLAWHPDKWGVFSVRSAYKLALQLAAIDNGSGSSEAETSKAWNLVWK 287

BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0

Query: 9    RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDF 68
            RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD 
Sbjct: 1382 RVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDA 1441

Query: 69   EDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQL 127
            E I+N  +  +  +D I W  D  G FS++SAY LA        S  S      K W  +
Sbjct: 1442 EVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMI 1501

BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: Q0IPZ9 (Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0

Query: 9    RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDF 68
            RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD 
Sbjct: 1056 RVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDA 1115

Query: 69   EDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQL 127
            E I+N  +  +  +D I W  D  G FS++SAY LA        S  S      K W  +
Sbjct: 1116 EVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMI 1175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0031740.16.1e-1136.21retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa][more]
XP_030507775.11.8e-1036.46uncharacterized protein LOC115722655 [Cannabis sativa][more]
XP_030502714.18.8e-1035.42uncharacterized protein LOC115717884 [Cannabis sativa][more]
CAH66131.11.5e-0935.51OSIGBa0135L04.5 [Oryza sativa][more]
XP_025877668.13.4e-0934.68uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 ret... [more]
Match NameE-valueIdentityDescription
A0A5A7SLW33.0e-1136.21Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... [more]
A0A803QDP21.5e-1042.50Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Q01M847.3e-1035.51OSIGBa0135L04.5 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135L04.5 PE=4 SV=1[more]
B8BN961.6e-0934.68Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
Q0IPZ91.6e-0934.68Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007183.1Tan0007183.1mRNA