Tan0007183 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGTATTTTATAAATCATAGCATGATGACACGCGCCAATAAGGTCAGTATCACTCACCTCCCTTTTCATTCTTCTGATCATAAACATATCCTTGCTCACTTACATTTTGATGGTCTGGATTTTATTTCTAAGAATCAACCCTTCGAGGAGGCTAGGGATATTGTTAAAAAACACTGGAAAGACAGAGTTTGTAACAATTCTAGGGGCATTGAGGATAAACTCTTCCACTTCCTTAAAAAGTTGAAGAAATGGGATAGGATGAGACTTAAAGGGTCCATTTGGGAGGCTATAAAGAATAAGGAGAATCAAATTGCTAGATTGACTAATCTCCCTAATCACTCCACGCTGAGTGAGCTCACTAAGGCTGAGAATGATTTAGAAGAGCTTCTGTTAGAAGAGGAAAAGTATTGGAAGATCAGATCTAGGAAAGATTGGCTCAAATGGGGTGATAAAAATGCTAAATGGTTTCACCATAAAGCCAACCAGAGGAGAAAAGGTAACAAAATCCAGAAGATTCTTGACTCTAATGGCACCTGGGCTACCAAAAATGAGGAAATTGGAAATGTTGCAACCAACTACTTTATCAATATTTTCAAATCTACCGAGCCTTCCCCCTTGGATATGGATCAGGCCTTAGTAGGTCTTGATAAGAAACTCAACGAGATTCAACTCGGGTGGCTGAGGAGGCCTTTTACTCCCAAAGAGATTGAGGATGTTGTTGGTGAAATGGGTACTTGTAAGGCCCCAGGTCCTGATGGTTGTCACGCCATGTTCTACCAAGGGTACTAGGACATTGTGGGTGATGAAACCAAGGTTATTTGCCTGAATATCTTGAATCAGGGGACGGGTGTTGATAAGATAAACAAAACTCTTCTGGTTCTCATTCCCAAGTGTAAGCAGGCTAACCGAATGGAGGATTTTGGACCCATTAGCCTATGTAATGTGCTTTATAAGATTGTAGCAAAAGGCAATAGTTAATAGGCTCAAAAAGATCATGGACTCATTAATCTCATCTCACCAGTCTGCCTTTGTTCCCAGAAGGCTCATTACGGATAATGTTATAATTGGATTTGTATGCATCCAAGCGATATCAACGTCTAGGAATATTGGGAACGGGAAGGTGGCTCTCAAGCTCGATATGAGTAAAGCCTATGACCGAGTTGAATGGGCTTTCCTCTGCAAGGTTATGGTTAAAATGGGTTTCGAGGAGAGATGGGTCAATATCATTATGGGTGGTGTGGAGTCAGTCTCTTTTTCAGTGCTTATCAATGGAATCCCTCAAAAAGAATTCAAACCAAATAGGGGCCTCAGACAAGGGGACCCCTATCCCCATTCTTATTCCTGCTTTGCGCAGAGGGGCTCTCTACTATCCTTAAAAGAGAAGAAGAGCAAAATAGGATTCACGGTCTAAAAATCAACAGCTTTTGTCCCCCCATAACTCATCTTTTCTTTGCAGATGACAGCTTACTATTCTTCAGAGCCACAAGAGAGGAATGTTCAACCATTAAGGAAGCTTTTGCGCTTTATGAGAAAGCCTCTGGGCAAACTATAAACTTCAACAAGTCGGCTTTCATGACTGATAAACTGGTTAGAAGGGATGTGGCTTCCTGTATTGAGGAAATTATGGGAGTAAAACAAGTCGATAATCTTGGCCATTATTTGGGCATGCCTTCCCAGACCTTGAGAAACAAAAGTAATCTTTTCAAGAAAATTAGGGACAAAGTTGGGAAGGTGCTCCAAGGCTGGAAAGGTAGCCTTTTCTCTTCAAGTGGAAAAGAAATCCTCATTATATTCCCAACTATACCATGAGTTTTTTTAGAATCCCTAAGGCTTTATGCAAGGTGATTAATCAGTTTTGTGCTAGGTTTTGGTGGGGGGGAAGTTGGCACTAAAAGAAAGCTCCACTGGATTGGATGGGATAATCTTTGTAAAAGCAAAGAGAAAGGGGGTTGGGATTTAGGGATCTTGAGAAATTCAATCAAGCTATGCTGGCAAAAATTAGTTGGTGTAACATTAGAAACCCGGAGAGCTTGATGGCTAAAGTTCTTAAAGAGCGGTATTTTAGGGATGGGAACTTCCTAAAGGCCCCTATTGGATCCAACCCTTTTTTATATGGAGAAGCATCGTTTGGGGCAGAGACCTTTTCGAAAAAGGGTACAGATGGAGAATTGGGGATGGTAGGCATATTAATATTAAAGAAAACCCTTGGATAGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAGAGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAGGGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCAGATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG MAINIRGGRVGNATREHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAKMGA Homology
BLAST of Tan0007183 vs. NCBI nr
Match: KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]) HSP 1 Score: 78.2 bits (191), Expect = 6.1e-11 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 0
BLAST of Tan0007183 vs. NCBI nr
Match: XP_030507775.1 (uncharacterized protein LOC115722655 [Cannabis sativa]) HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10 Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0
BLAST of Tan0007183 vs. NCBI nr
Match: XP_030502714.1 (uncharacterized protein LOC115717884 [Cannabis sativa]) HSP 1 Score: 74.3 bits (181), Expect = 8.8e-10 Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 0
BLAST of Tan0007183 vs. NCBI nr
Match: CAH66131.1 (OSIGBa0135L04.5 [Oryza sativa]) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09 Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0
BLAST of Tan0007183 vs. NCBI nr
Match: XP_025877668.1 (uncharacterized protein LOC4351546 [Oryza sativa Japonica Group] >ABA96496.2 retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] >BAF29216.2 Os12g0156200 [Oryza sativa Japonica Group]) HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09 Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0
BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: A0A5A7SLW3 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00010 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 0
BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: A0A803QDP2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10 Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: Q01M84 (OSIGBa0135L04.5 protein OS=Oryza sativa OX=4530 GN=OSIGBa0135L04.5 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10 Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0
BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09 Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0
BLAST of Tan0007183 vs. ExPASy TrEMBL
Match: Q0IPZ9 (Os12g0156200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0156200 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09 Identity = 43/124 (34.68%), Postives = 56/124 (45.16%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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