Csor.00g301960 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGGTAAACATCTGCATCTCGTTCTCATTTTTATCCTTATATTTCTTAAATGTAATCGTTTTTGTTGATTATCCTGGAATTTTTTGTGTTGATGTTTAGTTTTACGTGTTTTTTTTTTTGAATTTTTGAATGAAAAATTTACGTGTTTGTTTGGTTAATATGTTTTTTTCGTTTCATAGAATCTTTTTGTTATTTACTTGCGATTTGATTCGATCTGTTGTGACTCTGCACGATTTCAAGCTTTGGAGTTTCGTTTTTTGGATGGTTTGCGGTACCGATTGCTGATTATTTCTCTCATTCTGTGAAATGATTTACGGAATTTGATTCTGTCTCGCTATGATTTTTCTACCTATATTGATTCTGTTATTTTGGCTTGGTTAGCATTTTAGTTTATGAGGTTACTTCCGTTCGTTAACGCAGTTTTTGATAATTAATTTCTGTTTGAGAAACATTAAGAATAATGTGTTTGTAATTTGTGGCTGGATATGAATAAGTTTTTCATGTATGAAATTTGCAATCGATGGTTCAAGAGACTGAAGCGGCAGCACGATTGTTTTTTAATAATTATACTTTATGACTGTTTTTTGGTTGTAGCATGATATCCTTAGTGTTGTTATTTGTAATACTCATTTTCGTCGCCTTTTGATTGAATTACGTGAAAGCCAAGTATTTTGATTGATGTCATATATATTTTTTTTTTCCGAAACCAATTTGCAGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTATGAAAACTCTATGAATTGCCATAAGATTCTTGATCATAAACTCAGTTTTATTCGTTTAATCTGTTCTAATTTCTTGTTTGATCGATGTTTTGCAGGACATGGGCTTCAGTCTCTTCGATTAA ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGREKLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD Homology
BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 1.6e-34 Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2) HSP 1 Score: 145.6 bits (366), Expect = 3.5e-34 Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33 Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 4.3e-32 Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3) HSP 1 Score: 137.5 bits (345), Expect = 9.5e-32 Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 0
BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_022945075.1 (60S acidic ribosomal protein P2-2-like [Cucurbita moschata] >KAG6573879.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 204 bits (520), Expect = 6.37e-66 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_023541212.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 203 bits (517), Expect = 1.83e-65 Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_022968573.1 (60S acidic ribosomal protein P2-2-like [Cucurbita maxima]) HSP 1 Score: 203 bits (516), Expect = 2.59e-65 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0
BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_042514341.1 (60S acidic ribosomal protein P2-like [Macadamia integrifolia]) HSP 1 Score: 184 bits (467), Expect = 7.69e-58 Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0
BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_038891319.1 (60S acidic ribosomal protein P2-2-like [Benincasa hispida]) HSP 1 Score: 183 bits (465), Expect = 1.55e-57 Identity = 103/115 (89.57%), Postives = 109/115 (94.78%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1FZV9 (60S acidic ribosomal protein P2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111449424 PE=3 SV=1) HSP 1 Score: 204 bits (520), Expect = 3.08e-66 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1HYE9 (60S acidic ribosomal protein P2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467757 PE=3 SV=1) HSP 1 Score: 203 bits (516), Expect = 1.26e-65 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1J1Z8 (60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111482688 PE=3 SV=1) HSP 1 Score: 183 bits (464), Expect = 1.03e-57 Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1GZ75 (60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC111458566 PE=3 SV=1) HSP 1 Score: 183 bits (464), Expect = 1.03e-57 Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0
BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A2N9HS84 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42780 PE=3 SV=1) HSP 1 Score: 182 bits (463), Expect = 1.52e-57 Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0
BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family ) HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35 Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0
BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family ) HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35 Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0
BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family ) HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35 Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0
BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family ) HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35 Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0
BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27720.3 (60S acidic ribosomal protein family ) HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32 Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|