Csor.00g298220 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g298220
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 2615113 .. 2615427 (+)
RNA-Seq Expression	Csor.00g298220
Synteny	Csor.00g298220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCGTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGTAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGTCGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

mRNA sequence

ATGGGAAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCGTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGTAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGTCGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

Coding sequence (CDS)

ATGGGAAGGAGCTTCCATCTTCACACGCCACTCTCCATTTTCCTCGTCTCCTTCCTCTTCTTTTCATTCATCTGCGTCTCAAGTAATGCCTTATCCGAGACTCGCAAATTCAACTTACCCAGCTCCGATCGGGGTTTACTGAGCTTACAGAGAAGGAGAGATCGTCGGATTCCTAATTGCGGCGAAAAGGTTTCGGCTCTACAGTGCTCGGAGACCCCCAATTGCCGGTGGTGCCGGAGTGATGCCATCGATGATACCTGCTTCTCCAGAGCTGAGGCGTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

Protein sequence

MGRSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD

Homology

[Close]

BLAST of Csor.00g298220 vs. NCBI nr
Match: KAG6573331.1 (hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (537), Expect = 7.24e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGRSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC 60
           MGRSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC
Sbjct: 1   MGRSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNC 60

Query: 61  GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
           GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD
Sbjct: 61  GEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104

[Close]

BLAST of Csor.00g298220 vs. NCBI nr
Match: KAA0044701.1 (hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK16886.1 hypothetical protein E5676_scaffold130G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 6.34e-33
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 31  LSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSR 90
           LS  RKFN PSS R L +LQRRRD++I NCGEKVSA QCS+T  CRWCRSD IDDTCF+R
Sbjct: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63

Query: 91  AEALRLPQQVFSCD 104
           AEALRLPQQVFSCD
Sbjct: 64  AEALRLPQQVFSCD 77

[Close]

BLAST of Csor.00g298220 vs. NCBI nr
Match: XP_021669958.1 (uncharacterized protein LOC110657166 [Hevea brasiliensis])

HSP 1 Score: 97.8 bits (242), Expect = 3.40e-23
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 8   HTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSS-DRGLLSLQRRRDRRIPNCGEKVSA 67
           H+ +S F V  +F +FI  SS++ + T K+ LP S  R LL+ QR   R+IP C E VS 
Sbjct: 69  HSTIS-FPVLLIFLAFILQSSSSYTTTNKYPLPFSWHRSLLAAQRDSRRQIPICNEMVSG 128

Query: 68  LQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
             CS  PNCRWC+S+A+DD CF++AEA RLPQQVF CD
Sbjct: 129 SLCSRNPNCRWCKSEALDDMCFNKAEAWRLPQQVFVCD 165

[Close]

BLAST of Csor.00g298220 vs. NCBI nr
Match: XP_038723734.1 (uncharacterized protein LOC120015395 [Tripterygium wilfordii])

HSP 1 Score: 88.6 bits (218), Expect = 3.08e-20
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 13  IFLVSFLFFSFI--CVSSNALSETRKFNLPSSDRGLLSLQRRR---DRRIPNCGEKVSAL 72
           I L+  L FSF+    SS+ ++     +  +S R +L+ QRR     R+IP+CG+ VS  
Sbjct: 10  ILLLLLLIFSFLYQASSSHGIAAGEDISSTTSYRSILAEQRRGRTGSRQIPDCGQMVSRS 69

Query: 73  QCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
            CS+ P CRWCRSD +DD CFS+ EA RLPQQVF+CD
Sbjct: 70  HCSQNPQCRWCRSDELDDMCFSKTEARRLPQQVFTCD 106

[Close]

BLAST of Csor.00g298220 vs. NCBI nr
Match: KDP21149.1 (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 87.8 bits (216), Expect = 5.26e-20
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 32  SETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRA 91
           S T+  +L +S R LL+ QR   ++IPNC   V+  QCS+ P CRWC+S+A+DD CFS+ 
Sbjct: 29  STTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKI 88

Query: 92  EALRLPQQVFSCD 104
           EA RLPQQVF CD
Sbjct: 89  EAWRLPQQVFVCD 101

[Close]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL
Match: A0A0A0LX55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 4.44e-47
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 3   RSFHLHTPLSIFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNCGE 62
           RS HL +PLSIFL+SFLFF FI  S NALS  RKFN PSS R L SLQRRRD++I NCGE
Sbjct: 4   RSSHLSSPLSIFLISFLFFFFI--SCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCGE 63

Query: 63  KVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104
           KVSALQCS+TP CRWCRSD IDDTCF+RAEALRLPQQVFSCD
Sbjct: 64  KVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL
Match: A0A5A7TT10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00180 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 3.07e-33
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 31  LSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSR 90
           LS  RKFN PSS R L +LQRRRD++I NCGEKVSA QCS+T  CRWCRSD IDDTCF+R
Sbjct: 4   LSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFTR 63

Query: 91  AEALRLPQQVFSCD 104
           AEALRLPQQVFSCD
Sbjct: 64  AEALRLPQQVFSCD 77

[Close]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL
Match: A0A067JNS3 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.55e-20
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 32  SETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRA 91
           S T+  +L +S R LL+ QR   ++IPNC   V+  QCS+ P CRWC+S+A+DD CFS+ 
Sbjct: 29  STTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCSQNPKCRWCKSEALDDMCFSKI 88

Query: 92  EALRLPQQVFSCD 104
           EA RLPQQVF CD
Sbjct: 89  EAWRLPQQVFVCD 101

[Close]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL
Match: A0A1R3H5C1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.42e-20
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 44  RGLLSLQRRRDRRIPNCGEKVSALQCSETPNCRWCRSDAIDDTCFSRAEALRLPQQVFSC 103
           R LL+LQR    +IPNCGE +S  QC + P CRWCRS+A+DD CF ++EA RLPQQVF C
Sbjct: 39  RSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQVFLC 98

[Close]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL
Match: A0A2P2MZA0 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.01e-19
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 27  SSNAL-SETRK--FNLPSSDRGLLSLQR--RRDRRIPNCGEKVSALQCSETPNCRWCRSD 86
           SS+AL SE  K  ++L S  RGL  L+   +R + IPNCGE  S  QCS+ P CRWC+S+
Sbjct: 31  SSSALHSEASKDRWSLDSRRRGLSGLRGNPKRQQIIPNCGEMGSRSQCSQDPKCRWCKSE 90

Query: 87  AIDDTCFSRAEALRLPQQVFSCD 104
           A+DD CFS+AEA RLPQQVF CD
Sbjct: 91  ALDDMCFSKAEAWRLPQQVFVCD 113

The following BLAST results are available for this feature:

BLAST of Csor.00g298220 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g298220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573331.1	7.24e-69	100.00	hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044701.1	6.34e-33	78.38	hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK1688...	[more]
XP_021669958.1	3.40e-23	53.06	uncharacterized protein LOC110657166 [Hevea brasiliensis]	[more]
XP_038723734.1	3.08e-20	48.45	uncharacterized protein LOC120015395 [Tripterygium wilfordii]	[more]
KDP21149.1	5.26e-20	54.79	hypothetical protein JCGZ_21620 [Jatropha curcas]	[more]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX55	4.44e-47	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1	[more]
A0A5A7TT10	3.07e-33	78.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A067JNS3	2.55e-20	54.79	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1	[more]
A0A1R3H5C1	3.42e-20	62.30	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1	[more]
A0A2P2MZA0	1.01e-19	57.83	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Csor.00g298220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36896	OS01G0729500 PROTEIN	coord: 13..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g298220.m01	Csor.00g298220.m01	mRNA