Csor.00g030030 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g030030
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	peptidyl-tRNA hydrolase ICT1, mitochondrial
Location	Csor_Chr16: 7659939 .. 7663899 (+)
RNA-Seq Expression	Csor.00g030030
Synteny	Csor.00g030030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACCATTCATTGTCCGGTGCTGCGTTCGCCGTCAGCACCAGTGGTCGTCGTCTTCCCAGGCTCAAAGCACTTAGAAGCTGTAGAGGAAGCTCATCGCTGCTAACTCGTTTTCAAGGTACCTTGGAGAAAGAATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCGCAACCCTATTTTACTCTATCAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGCCATATGTGCCGCTTCGGAGTCGTCTGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATTACTCTCGGTATGTCCCGAAAATCACTCAATAATCTATTGTTTAAAGTGATTGATTTTTTTACTGCGTCAATTGGTAGTTGTGGTAGTATAATCCCCTGAGATGTAACGTGTATGGTTGCTAATTCAAGCCAGAGGGACTACTCGTCGATATAGGTTCACTTTTGTCTATTTTCTCTAGCCCTAAATTATCTGAGTGTAAAGTAGCTCACATCCATTGAAACTGCTCGTAGCTACTTTGAAGAAGATGAGTCTTTTGTCCAATGGATGTTGAATCACTGAAACTCCCGGATTTTGTTCAGTTTGTGACATATCTTCTAAGAATAATTTACTGAACCCTTGTGGAATCACCTTGAACCCTTGAATGTCCTTTTCCTTTCTGATTTTGATTCCCGGAAATGCACTCACTTTCCTTCTTGTTTTTTTCTGATCCTGGGCCGAAGCCTTGCACTTCACTATGCTGCGTGCTTTAGAAACATTGGTTTATAGCTAGGCTTGTTGCACTTGCACATGGAAGAACTAACACTATAACAAGGAAACATGGTGTTTAAATGAAGTTGTTATTCCAGGGCTTTACTCGATTTCAACCAATAAAGAGAGAACTATTAAAGATGGTTAATGCTAATGCTTGTTGGAGTTTGGGATTAAGAGAAATCTTAATGAAAAGGAGCTTGAAGAATGTCTCTTTTTGAATTCTTGATTGATGATTTCAAGCTGAATGATATGGATTATGGCAGGTTATTGAATATGGATTCCCTCTGAACCTTCTCTAGTGCATTTTCCATTGAGAGACAACAGAGTGGTTGCCAAAGAAAAAAGGTGTTGTCTGTTCTGTTGCGAGCTCAGAGAAAATTTGCATTTCATTCCTCTGGTTTTCAATTTGTATGTCTGATTTTTCATCAAACAATTTGCAGTTTCAAAGAGATTTTATTTAATACACTTTCTTCCTCTTTCTAAAGAACTCTCTCTAGTGCATCCATGTATAAACGTATATAGGGTGAAATGCTAGGTGCTAGAGTCTTAGTAAGAGCCTTTTTACATTCAAGTGGAGATGGAAAATCCACTGGAGTGTGATTTTTTTTTTTGGAATTTTTACATGGAAAGCTAAGTACTTTGGATGCAATAAAAAAGAAGAACCTAACTTGTTTATCTCCTTCTAGGAGCTATTTTAATCACAATTATATTGACATTCAAGGAAATTGAAGATGCTTTTATAGCTCCTTTGATAATGGAAAGGAACGTTATGACTACTCTTCAATTGTCGCAGAATTGCAAAGATACAAAAAAAAAAAACAGATGCTTAATCACAAGAAAAAGCTATTAGTGGCAGGAGAATTTCGGCCAATCAGTTTCTAATTGGAGAAAATGGTAATTAAAATGAAATTGAGAGAGAGGAAGCCGGATGATTTGAGAAAGTTAGATAAAGATGTGTGTTACTAGCATTTGTGGGTGAAAAGTGAAGACCCAAATGTTGGTTTGTCAGAGCAGAAAGACATTTTTGGTAATCATCATAGTGAAAGAGAGAAACTTTGAGGCTAAGATTAGAAGATTAGATAGAAAACCATGGTATGTTCCTTCTGCCCAATATTATAGACCAGTGCGGAGCTGGATTAGTTCAAGATATTCTTTTTCCTATTCTGTTGCTGTACAATATAAATGGATTCGTGCACCCAAATAGGAGAGGGGAGTGCACATGATCATTGGAGAGATTGTGGATTTGATGCAATTTTATGCTCCCGTAGGGGGCGATACAGGGGGAGGAGAATTTAGAAGGGGACTTGATCAATGAGTTGGAACTTGTAATATGAGGTAAGGATGTTGAAGCCAATGGAACATGGGGAATCTGAATTAGCAGATTGAGTTGCATTTCTCAAGGCTACACAGATTAGGAGACTTTAGCTTCGTTTTGTGGGAAAACACAAATTATGTTATTGGTCACACCACCTCCCCTTCGCTTCAGCGACTTATTTTACTGGATTCTTGACTTCAAAAAAGTTCAACCTCTCCTTCCTGTACTTTGTTCTGAACTACCTAAAATGAAAATTCTTTTTCTTGTAGTGCGTCACTAAAAGTTCTCTCCTCATATAAAACCCAAGTCATTTTCCTTCCATTGCAGCAAAACACCAGTCAGGTGTTCAAATCATTTATTTCTTCTCTAATTCTTTATAGATTTAATTTCTCAATCAGTCTTGTCCACAATGGAGATGCTAGGAGAATTTTGTTGATAGAACACCACAATTCTTTGGCTAATATATCCTAAAAAGGGAAAGGATATTCAAATTTTTTGTAGTTTCCTACCCTTAAAGGAAAAAGATTCTCTAATCAGCAATTGCTATTTTTTTCCTGTCCCTCAGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGGTCAGTTTATTTTCTTGGCTCTGATTGGTTTTGTTTCTACTTTAGAGTTGCCTTTTTCTTTATGAGGTATCATTTCTGTAAATGATAGTGCAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGTTTGTTACTTAATTTTCTATTACATATCTTTCCTCTCCTTCCCTCGAATTAAAGTGCCAAGTTTTAGAAAATTTCCTTTCTGTCTTTCAAATCCGCACAACATTGAGATTTGTATGGTTTAGGGACTGGAAAGTACTTGTAAACTGTAGTTATTTATCTCATTTTAATACAATTAATATGGTTTTGTTTTTTAGAGAGAGAAAAAAATCTGAATCAATAGAGTATGATCCTGGTACTTGGAAGTGGTTCAAGTGTTAATTAATCTTTCGTCACGATATTACTCGTCTCTTCTGTCTCTTTCTCGACATGAATATTGCTTTGCTGAACAGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGTAAACTTCTGTCCTCTTCATCTTCCTTATTTCCTCCCATGTTTGTTCTACCAAAAAGACTTGTTAACTTTTCTTCTCTTCATTTCTTCAGGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGTACTTGCCTTCCCATAGGATCCTTCTCTTCTTGTCTATTTAATAGCGAATATATGGAAAGTAAAATAGTCTATGGCCATTTCTTGGAAGGTAGATTCTGCATTCTGCCGTAGTTTCTTAACTGAATTTTAATTTCCAATAATGGGGTTGTTTCGATATGAAAACCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGTGAGTTCTTTCAACTTCCTTGGCCACTTGATTTCAAAAAGTTTATGCATCTCCCATGATGTATTTAAATGTAAGGTAATACTTCTTGTATTTGTTAAGGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAA

mRNA sequence

ATGGAGAACCATTCATTGTCCGGTGCTGCGTTCGCCGTCAGCACCAGTGGTCGTCGTCTTCCCAGGCTCAAAGCACTTAGAAGCTGTAGAGGAAGCTCATCGCTGCTAACTCGTTTTCAAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGCCATATGTGCCGCTTCGGAGTCGTCTGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATTACTCTCGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAA

Coding sequence (CDS)

ATGGAGAACCATTCATTGTCCGGTGCTGCGTTCGCCGTCAGCACCAGTGGTCGTCGTCTTCCCAGGCTCAAAGCACTTAGAAGCTGTAGAGGAAGCTCATCGCTGCTAACTCGTTTTCAAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTTGGTCGTGCCATATGTGCCGCTTCGGAGTCGTCTGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGTCGAACCCGCCCCTAAAATTACTCTCGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGGGTAACATTGAAGATGCCTTGGAGAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGATGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGATAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAA

Protein sequence

MENHSLSGAAFAVSTSGRRLPRLKALRSCRGSSSLLTRFQVPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD

Homology

[Close]

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot
Match: Q8R035 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl58 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-22
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 111 ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 170
           I LD +++++ RS GPGGQNVNKVN+K ++RF++  A W+ E +R+KI  T KN+INK G
Sbjct: 72  IPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAG 131

Query: 171 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEE----QKKKIAKMAAIGEQKR 230
           ELV++S  +R Q  N+ + L+K++ +I  AS VP  PS+E    Q+ +I KM     ++R
Sbjct: 132 ELVLTSESSRYQFRNLAECLQKIRDMIAEASQVPKEPSKEDARLQRLRIEKM----NRER 191

Query: 231 LKSKKVLSDKKAFRR 242
           L+ K++ S  K  RR
Sbjct: 192 LRQKRLNSALKTSRR 202

[Close]

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot
Match: B5XAM2 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar OX=8030 GN=mrpl58 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-21
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 111 ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 170
           I +D +TV+++RS GPGGQ+VNKV+TK ++RF+V  A W+ E +R+KI+   KNRINK G
Sbjct: 57  IPVDRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVYTADWIPEDVRQKIILNNKNRINKAG 116

Query: 171 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 230
           EL+++S ++R+Q+ N+ D ++K+  II  A+  P  PS E     A       ++RLK K
Sbjct: 117 ELLVTSEQSRSQQRNMGDCIQKISDIIAKATEKPHEPSAEDIALRASRLEKRNKERLKQK 176

Query: 231 KVLSDKKAFRR 242
           K+ S  K  RR
Sbjct: 177 KLHSAVKQTRR 187

[Close]

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot
Match: Q14197 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL58 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 111 ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 170
           I LD +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+KI  T KN+IN+ G
Sbjct: 72  IPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLG 131

Query: 171 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 230
           EL+++S  +R Q  N+ D L+K++ +I  AS  P  P++E  K          ++RL+ K
Sbjct: 132 ELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQK 191

Query: 231 KVLSDKKAFRR 242
           ++ S  K  RR
Sbjct: 192 RIHSAVKTSRR 202

[Close]

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot
Match: Q3T116 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus OX=9913 GN=MRPL58 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 56/135 (41.48%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 111 ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 170
           I +D +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+K+  T KN+IN+ G
Sbjct: 72  IPVDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKMALTHKNKINRAG 131

Query: 171 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEE----QKKKIAKMAAIGEQKR 230
           EL+++S  +R Q  N+ D L+K++ +I  AS     PS+E    QK +I  M     ++R
Sbjct: 132 ELILTSEYSRYQFRNLADCLQKIRDMIAEASQPATEPSKEDAALQKLRIENM----NRER 191

Query: 231 LKSKKVLSDKKAFRR 242
           L+ K++ S  K  RR
Sbjct: 192 LRKKRINSAIKTSRR 202

[Close]

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot
Match: D2HD32 (Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda melanoleuca OX=9646 GN=MRPL58 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 53/131 (40.46%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 111 ITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDG 170
           I LD +T+++ RS GPGGQNVNKVN+K ++RF++  A W++E +R+K+    KN+IN+ G
Sbjct: 72  IPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKMAIMHKNKINRSG 131

Query: 171 ELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSK 230
           EL+++S  +R Q  N+ D L+K++ +I  AS  P  PS+E             ++RL+ K
Sbjct: 132 ELILTSECSRYQFRNLADCLQKIRDMIAEASQTPKEPSKEDAALHRIRIENMNRERLRKK 191

Query: 231 KVLSDKKAFRR 242
           ++ S  K  RR
Sbjct: 192 RIHSAIKTGRR 202

[Close]

BLAST of Csor.00g030030 vs. NCBI nr
Match: KAG6577595.1 (Peptidyl-tRNA hydrolase ICT1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 471 bits (1212), Expect = 4.22e-167
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MENHSLSGAAFAVSTSGRRLPRLKALRSCRGSSSLLTRFQVPPLFPATLNNPNAALRFRL 60
           MENHSLSGAAFAVSTSGRRLPRLKALRSCRGSSSLLTRFQVPPLFPATLNNPNAALRFRL
Sbjct: 1   MENHSLSGAAFAVSTSGRRLPRLKALRSCRGSSSLLTRFQVPPLFPATLNNPNAALRFRL 60

Query: 61  REISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNF 120
           REISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNF
Sbjct: 61  REISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNF 120

Query: 121 ARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTR 180
           ARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTR
Sbjct: 121 ARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTR 180

Query: 181 TQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFR 240
           TQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFR
Sbjct: 181 TQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFR 240

Query: 241 RSRGSWD 247
           RSRGSWD
Sbjct: 241 RSRGSWD 247

[Close]

BLAST of Csor.00g030030 vs. NCBI nr
Match: XP_022923175.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita moschata] >XP_022923177.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita moschata] >KAG7015643.1 Peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1013), Expect = 5.21e-137
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 41  VPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERA 100
           VPPLFPATLNNPNAALRFRLREISFGR ICAASESSGAGGKVSSRLSQVQQLLQEAEERA
Sbjct: 26  VPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERA 85

Query: 101 LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 160
           LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ
Sbjct: 86  LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 145

Query: 161 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 220
           TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA
Sbjct: 146 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 205

Query: 221 IGEQKRLKSKKVLSDKKAFRRSRGSWD 247
           IGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 206 IGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of Csor.00g030030 vs. NCBI nr
Match: XP_022965162.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita maxima] >XP_022965163.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita maxima])

HSP 1 Score: 392 bits (1006), Expect = 6.07e-136
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 41  VPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERA 100
           VPPLFPATLNNPNAALRFRLREISFGR ICAASESSGAGGKVSSRLSQVQQLLQEAEERA
Sbjct: 26  VPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERA 85

Query: 101 LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 160
           LSAD EPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ
Sbjct: 86  LSADDEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 145

Query: 161 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 220
           TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA
Sbjct: 146 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 205

Query: 221 IGEQKRLKSKKVLSDKKAFRRSRGSWD 247
           IGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 206 IGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of Csor.00g030030 vs. NCBI nr
Match: XP_023551980.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023551981.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390 bits (1002), Expect = 2.47e-135
Identity = 204/207 (98.55%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 41  VPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERA 100
           VPP+FPATLNN NAALRFRLREISFGR ICAASESSGAGGKVSSRLSQVQQLLQEAEERA
Sbjct: 26  VPPVFPATLNNSNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERA 85

Query: 101 LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 160
           LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ
Sbjct: 86  LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 145

Query: 161 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 220
           TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA
Sbjct: 146 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 205

Query: 221 IGEQKRLKSKKVLSDKKAFRRSRGSWD 247
           IGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 206 IGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of Csor.00g030030 vs. NCBI nr
Match: XP_038876872.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial [Benincasa hispida] >XP_038876873.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Benincasa hispida])

HSP 1 Score: 372 bits (954), Expect = 9.21e-128
Identity = 192/206 (93.20%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 42  PPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERAL 101
           PP+FP TL+NPNAALRFRLREISFGR +CAAS+S+GAGGKVSSRLSQVQQLLQEAEERAL
Sbjct: 44  PPIFPITLHNPNAALRFRLREISFGRVLCAASDSAGAGGKVSSRLSQVQQLLQEAEERAL 103

Query: 102 SADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQT 161
            AD EPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIRE+I+Q 
Sbjct: 104 LADSEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIRERIIQM 163

Query: 162 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI 221
           EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEE+KKKIAKMAAI
Sbjct: 164 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEKKKKIAKMAAI 223

Query: 222 GEQKRLKSKKVLSDKKAFRRSRGSWD 247
           GEQKRLKSKKVLSDKKAFRRSR SWD
Sbjct: 224 GEQKRLKSKKVLSDKKAFRRSRNSWD 249

[Close]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL
Match: A0A6J1E5G6 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111430949 PE=4 SV=1)

HSP 1 Score: 394 bits (1013), Expect = 2.52e-137
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 41  VPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERA 100
           VPPLFPATLNNPNAALRFRLREISFGR ICAASESSGAGGKVSSRLSQVQQLLQEAEERA
Sbjct: 26  VPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERA 85

Query: 101 LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 160
           LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ
Sbjct: 86  LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 145

Query: 161 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 220
           TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA
Sbjct: 146 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 205

Query: 221 IGEQKRLKSKKVLSDKKAFRRSRGSWD 247
           IGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 206 IGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL
Match: A0A6J1HN26 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111465103 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 2.94e-136
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 41  VPPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERA 100
           VPPLFPATLNNPNAALRFRLREISFGR ICAASESSGAGGKVSSRLSQVQQLLQEAEERA
Sbjct: 26  VPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERA 85

Query: 101 LSADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 160
           LSAD EPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ
Sbjct: 86  LSADDEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQ 145

Query: 161 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 220
           TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA
Sbjct: 146 TEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAA 205

Query: 221 IGEQKRLKSKKVLSDKKAFRRSRGSWD 247
           IGEQKRLKSKKVLSDKKAFRRSRGSWD
Sbjct: 206 IGEQKRLKSKKVLSDKKAFRRSRGSWD 232

[Close]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL
Match: A0A1S4DXZ3 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490933 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 3.50e-121
Identity = 183/206 (88.83%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 42  PPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERAL 101
           P +FP  L+NPNA L FRLR+ISFGR +CAAS+S G GGKVSSRLSQ+QQLL EAEERAL
Sbjct: 27  PSIFPKPLHNPNATLPFRLRDISFGRVLCAASDSPGTGGKVSSRLSQMQQLLLEAEERAL 86

Query: 102 SADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQT 161
           SAD EPAPKITLDHV VNFARSGGPGGQNVNKVNTKVDMRFNVK+AYWLS+RIREKI+QT
Sbjct: 87  SADSEPAPKITLDHVIVNFARSGGPGGQNVNKVNTKVDMRFNVKEAYWLSDRIREKILQT 146

Query: 162 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI 221
           EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAK+AAI
Sbjct: 147 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKLAAI 206

Query: 222 GEQKRLKSKKVLSDKKAFRRSRGSWD 247
           GEQKRLKSKKV SDKKAFRRSR SWD
Sbjct: 207 GEQKRLKSKKVHSDKKAFRRSRNSWD 232

[Close]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL
Match: A0A5D3D7B4 (Peptidyl-tRNA hydrolase ICT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001310 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 3.50e-121
Identity = 183/206 (88.83%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 42  PPLFPATLNNPNAALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERAL 101
           P +FP  L+NPNA L FRLR+ISFGR +CAAS+S G GGKVSSRLSQ+QQLL EAEERAL
Sbjct: 27  PSIFPKPLHNPNATLPFRLRDISFGRVLCAASDSPGTGGKVSSRLSQMQQLLLEAEERAL 86

Query: 102 SADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQT 161
           SAD EPAPKITLDHV VNFARSGGPGGQNVNKVNTKVDMRFNVK+AYWLS+RIREKI+QT
Sbjct: 87  SADSEPAPKITLDHVIVNFARSGGPGGQNVNKVNTKVDMRFNVKEAYWLSDRIREKILQT 146

Query: 162 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI 221
           EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAK+AAI
Sbjct: 147 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKLAAI 206

Query: 222 GEQKRLKSKKVLSDKKAFRRSRGSWD 247
           GEQKRLKSKKV SDKKAFRRSR SWD
Sbjct: 207 GEQKRLKSKKVHSDKKAFRRSRNSWD 232

[Close]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL
Match: A0A6J1DF18 (peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111020443 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 6.82e-121
Identity = 186/206 (90.29%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 43  PLFPATLNNPN-AALRFRLREISFGRAICAASESSGAGGKVSSRLSQVQQLLQEAEERAL 102
           P+FP+TL+NPN  ALRFRLREISFGR +CA+S+S    GKVS+RLSQVQQLLQEAEERAL
Sbjct: 28  PIFPSTLHNPNNGALRFRLREISFGRVLCASSDSGA--GKVSARLSQVQQLLQEAEERAL 87

Query: 103 SADVEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQT 162
           SAD EPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLS+RIRE+IMQ 
Sbjct: 88  SADREPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSDRIRERIMQM 147

Query: 163 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI 222
           EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI
Sbjct: 148 EKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAI 207

Query: 223 GEQKRLKSKKVLSDKKAFRRSRGSWD 247
           GEQKRLKSKK+LSDKKAFRRSR SWD
Sbjct: 208 GEQKRLKSKKILSDKKAFRRSRDSWD 231

[Close]

BLAST of Csor.00g030030 vs. TAIR 10
Match: AT1G62850.2 (Class I peptide chain release factor )

HSP 1 Score: 281.2 bits (718), Expect = 8.1e-76
Identity = 151/180 (83.89%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 70  CAASESSGAGG--KVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPG 129
           CAAS S G+GG  KVSSRLSQVQQ+L EAEERA SA  EP P+ITLD+VT+NFARSGGPG
Sbjct: 56  CAASTSGGSGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITLDNVTLNFARSGGPG 115

Query: 130 GQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIE 189
           GQNVNK+NTKVDMRFNVK+AYWLS+RIREKI+ TEKNRINKDGELVISSTKTRTQKGNI+
Sbjct: 116 GQNVNKLNTKVDMRFNVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKGNID 175

Query: 190 DALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 248
           DALEKLQAIIDAASYVPPPPSEEQKKKI K+AA  + KRLKSKKVLSDKK+ RRSRGS+D
Sbjct: 176 DALEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235

[Close]

BLAST of Csor.00g030030 vs. TAIR 10
Match: AT1G62850.3 (Class I peptide chain release factor )

HSP 1 Score: 281.2 bits (718), Expect = 8.1e-76
Identity = 151/180 (83.89%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 70  CAASESSGAGG--KVSSRLSQVQQLLQEAEERALSADVEPAPKITLDHVTVNFARSGGPG 129
           CAAS S G+GG  KVSSRLSQVQQ+L EAEERA SA  EP P+ITLD+VT+NFARSGGPG
Sbjct: 56  CAASTSGGSGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITLDNVTLNFARSGGPG 115

Query: 130 GQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIE 189
           GQNVNK+NTKVDMRFNVK+AYWLS+RIREKI+ TEKNRINKDGELVISSTKTRTQKGNI+
Sbjct: 116 GQNVNKLNTKVDMRFNVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKGNID 175

Query: 190 DALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 248
           DALEKLQAIIDAASYVPPPPSEEQKKKI K+AA  + KRLKSKKVLSDKK+ RRSRGS+D
Sbjct: 176 DALEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235

The following BLAST results are available for this feature:

BLAST of Csor.00g030030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R035	8.6e-22	44.44	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl58 P...	[more]
B5XAM2	4.3e-21	44.27	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar OX=8030 GN=mrpl58 PE=...	[more]
Q14197	5.6e-21	41.98	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL58 PE...	[more]
Q3T116	1.1e-19	41.48	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus OX=9913 GN=MRPL58 PE=2...	[more]
D2HD32	1.8e-19	40.46	Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda melanoleuca OX=9646 GN...	[more]

BLAST of Csor.00g030030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577595.1	4.22e-167	100.00	Peptidyl-tRNA hydrolase ICT1, mitochondrial, partial [Cucurbita argyrosperma sub...	[more]
XP_022923175.1	5.21e-137	99.52	peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita moschata] >XP_022923177.1...	[more]
XP_022965162.1	6.07e-136	99.03	peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita maxima] >XP_022965163.1 p...	[more]
XP_023551980.1	2.47e-135	98.55	peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_038876872.1	9.21e-128	93.20	peptidyl-tRNA hydrolase ICT1, mitochondrial [Benincasa hispida] >XP_038876873.1 ...	[more]

BLAST of Csor.00g030030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5G6	2.52e-137	99.52	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HN26	2.94e-136	99.03	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S4DXZ3	3.50e-121	88.83	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A5D3D7B4	3.50e-121	88.83	Peptidyl-tRNA hydrolase ICT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1DF18	6.82e-121	90.29	peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Csor.00g030030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62850.2	8.1e-76	83.89	Class I peptide chain release factor	[more]
AT1G62850.3	8.1e-76	83.89	Class I peptide chain release factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	GENE3D	3.30.160.20		coord: 103..245 e-value: 3.6E-43 score: 148.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..247
None	No IPR available	PANTHER	PTHR47352:SF1	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 44..247
None	No IPR available	PANTHER	PTHR47352	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 44..247
None	No IPR available	SUPERFAMILY	110916	Peptidyl-tRNA hydrolase domain-like	coord: 109..201
IPR000352	Peptide chain release factor class I	PFAM	PF00472	RF-1	coord: 110..237 e-value: 1.1E-18 score: 67.2
IPR000352	Peptide chain release factor class I	PROSITE	PS00745	RF_PROK_I	coord: 122..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g030030.m01	Csor.00g030030.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003747	translation release factor activity