Csor.00g275630 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCTCCAAGCAAGCGCCGCGAGATGGATTTGATGAAACTGTAAGTTTTTCCACCTTCCATGTCTTCCGATTTGATTGTTCTGTTCTTCTTTTACGCTTCTGGTTTGACTGTGCTGATTTTGAATCAGGATGATGAGCGATTATAAGGTCGAAACGATCAATGATAGTATGCAAGAGTTCTATGTCGACTTCCATGGACCGAAAGACAGTAAATCTTCTATATCCTTCTTTGATTTTTCAATAGGGTTTTGTTAATTTTGTTGATTCTGTCTCTTTATGATTCCCCCCTTTTCCAGATAGCTTAAGAACTTTGTAATCCTGTGATTATTGTTTTGAGGCTTTGTAGTTTTGTTCTTCTAAATCTAGAGTGTTTGGTGTTTAGAATTTGTTCTTAAGTCTTGCTGGCTTTCCCTTCTGAAATTAAGCCCTGTTGATTTAGATAATTCTAGGCGATATGAATTTGGATTGAAGGATTTCTTATGTGATTTCCTTGAAATTGGAAGGTCTTTATGAAGGAGGTGTGTGGAGGATTAAGGTGGAGTTGCCTGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTGAGTCGACTGACTTCGACGTCGAAACTTATTACATTGATTCTTACTATGGGCAGGCTGTTGATATCGATGTGTATGAATTGCAGGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGGTAGGAAGCTTCTTTTTGGGATTATGTATTATGGTGACCAATTGGTTTTTACATTGTGGATATTGTAATGCTGCAATGTAACTGAGGAATTGTGATCTAATTCGGGTTTTTTTTTTTTTTATGCTGTACAGACCTTGTAAATGTTTTTGATGTGTTTCTTCCACAACTTCTCTTGTATCCCAACCCGTCCGACCCATTGAATGGAGAAGCTGCTGCAGTAATGATGCGTGATCGGACTGCATACGAGCAAAGAGTAAAAGGTACTCTTTAGTTCTATCGAAGATTTGGTAGTTTGAACGAATTTTAATCCATTGGCTCGGGTGGTAACACGAAAACTAGATTTAGTAGTTTTGCTATATGATAATGGCTGAGAATTTTCTTATTGTAAACTCGATTTTTGGTTGTTGATGTTGTGCTAATCCACATGATAAACTTACTAGCCCCGAGCTTCGATGATGGTTGCAACAGTCTAAACTCACCATAACAGATATTGTCCTCTTTGGGCTTACCCTTCCGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCCGCTAGGGAGAGATTTCCACACCCTTATAAACAATGTTTCATTCTCCTCTCCAACCGATTCGAGGTCTAGCGTCCTCGCTGACACTCATTCCCTTCTCCATTTTGCCAAACCCTTTTGTGTTCTGATTATGAAATTATTGATATTGATCATATGGTTGTCACTTCGGATACATCATTAATACCCACTTTTTGATCTCTCGTACAGTATAGAAGTCGTATTGATTAGTTTCCTCCCCCGTCCCCCAACCTGACTCAACGTCCGAAACTCTACATGGTTCGAGACCTGTAAAACTCCCCTATCTCGTTCTTCTTTTTTACATTTTGATCGTGCTTGTCCAGAATTCTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGCTGCTCCTGAGGAGAAATCTAGTGATGAGGAGATGAGTGAAGATGATTATTCCTCAAATGACGAGGGCATGGCAGGCCAAGCTGATGATTGA ATGTCTTCTCCAAGCAAGCGCCGCGAGATGGATTTGATGAAACTGATGATGAGCGATTATAAGGTCGAAACGATCAATGATAGTATGCAAGAGTTCTATGTCGACTTCCATGGACCGAAAGACAGTCTTTATGAAGGAGGTGTGTGGAGGATTAAGGTGGAGTTGCCTGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGACCTTGTAAATGTTTTTGATGTGTTTCTTCCACAACTTCTCTTGTATCCCAACCCGTCCGACCCATTGAATGGAGAAGCTGCTGCAGTAATGATGCGTGATCGGACTGCATACGAGCAAAGAGTAAAAGAATTCTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGCTGCTCCTGAGGAGAAATCTAGTGATGAGGAGATGAGTGAAGATGATTATTCCTCAAATGACGAGGGCATGGCAGGCCAAGCTGATGATTGA ATGTCTTCTCCAAGCAAGCGCCGCGAGATGGATTTGATGAAACTGATGATGAGCGATTATAAGGTCGAAACGATCAATGATAGTATGCAAGAGTTCTATGTCGACTTCCATGGACCGAAAGACAGTCTTTATGAAGGAGGTGTGTGGAGGATTAAGGTGGAGTTGCCTGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGACCTTGTAAATGTTTTTGATGTGTTTCTTCCACAACTTCTCTTGTATCCCAACCCGTCCGACCCATTGAATGGAGAAGCTGCTGCAGTAATGATGCGTGATCGGACTGCATACGAGCAAAGAGTAAAAGAATTCTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGCTGCTCCTGAGGAGAAATCTAGTGATGAGGAGATGAGTGAAGATGATTATTCCTCAAATGACGAGGGCATGGCAGGCCAAGCTGATGATTGA MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYEGGVWRIKVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFDVFLPQLLLYPNPSDPLNGEAAAVMMRDRTAYEQRVKEFCEKYAKPEDIGAAPEEKSSDEEMSEDDYSSNDEGMAGQADD Homology
BLAST of Csor.00g275630 vs. ExPASy Swiss-Prot
Match: P42748 (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2) HSP 1 Score: 305.4 bits (781), Expect = 4.2e-82 Identity = 146/175 (83.43%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy Swiss-Prot
Match: P42749 (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2) HSP 1 Score: 299.3 bits (765), Expect = 3.0e-80 Identity = 149/187 (79.68%), Postives = 165/187 (88.24%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy Swiss-Prot
Match: P16577 (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 5.1e-80 Identity = 142/183 (77.60%), Postives = 163/183 (89.07%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy Swiss-Prot
Match: P42750 (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2) HSP 1 Score: 280.4 bits (716), Expect = 1.4e-74 Identity = 132/182 (72.53%), Postives = 157/182 (86.26%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy Swiss-Prot
Match: Q9P7R4 (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc8 PE=3 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60 Identity = 110/182 (60.44%), Postives = 142/182 (78.02%), Query Frame = 0
BLAST of Csor.00g275630 vs. NCBI nr
Match: KAG6579517.1 (Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 369 bits (947), Expect = 7.93e-129 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of Csor.00g275630 vs. NCBI nr
Match: XP_022929074.1 (ubiquitin-conjugating enzyme E2 4-like [Cucurbita moschata] >XP_022970107.1 ubiquitin-conjugating enzyme E2 4-like [Cucurbita maxima] >XP_023549616.1 ubiquitin-conjugating enzyme E2 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 368 bits (944), Expect = 2.27e-128 Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of Csor.00g275630 vs. NCBI nr
Match: KAG7016977.1 (Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 360 bits (925), Expect = 2.65e-125 Identity = 183/194 (94.33%), Postives = 183/194 (94.33%), Query Frame = 0
BLAST of Csor.00g275630 vs. NCBI nr
Match: XP_004143895.1 (ubiquitin-conjugating enzyme E2 4 [Cucumis sativus] >XP_008437307.1 PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Cucumis melo] >XP_038906796.1 ubiquitin-conjugating enzyme E2 4-like [Benincasa hispida] >KAA0042743.1 ubiquitin-conjugating enzyme E2 4-like isoform X1 [Cucumis melo var. makuwa] >KGN50082.1 hypothetical protein Csa_000238 [Cucumis sativus]) HSP 1 Score: 355 bits (911), Expect = 2.45e-123 Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of Csor.00g275630 vs. NCBI nr
Match: XP_022159827.1 (ubiquitin-conjugating enzyme E2 4-like [Momordica charantia]) HSP 1 Score: 352 bits (902), Expect = 5.77e-122 Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy TrEMBL
Match: A0A6J1HY74 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469098 PE=3 SV=1) HSP 1 Score: 368 bits (944), Expect = 1.10e-128 Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy TrEMBL
Match: A0A6J1EMP7 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita moschata OX=3662 GN=LOC111435771 PE=3 SV=1) HSP 1 Score: 368 bits (944), Expect = 1.10e-128 Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy TrEMBL
Match: A0A5A7THI1 (Ubiquitin-conjugating enzyme E2 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002420 PE=3 SV=1) HSP 1 Score: 355 bits (911), Expect = 1.19e-123 Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy TrEMBL
Match: A0A0A0KNV9 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152970 PE=3 SV=1) HSP 1 Score: 355 bits (911), Expect = 1.19e-123 Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of Csor.00g275630 vs. ExPASy TrEMBL
Match: A0A1S3AUA7 (ubiquitin-conjugating enzyme E2 4-like OS=Cucumis melo OX=3656 GN=LOC103482765 PE=3 SV=1) HSP 1 Score: 355 bits (911), Expect = 1.19e-123 Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of Csor.00g275630 vs. TAIR 10
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4 ) HSP 1 Score: 305.4 bits (781), Expect = 3.0e-83 Identity = 146/175 (83.43%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Csor.00g275630 vs. TAIR 10
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5 ) HSP 1 Score: 299.3 bits (765), Expect = 2.1e-81 Identity = 149/187 (79.68%), Postives = 165/187 (88.24%), Query Frame = 0
BLAST of Csor.00g275630 vs. TAIR 10
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6 ) HSP 1 Score: 280.4 bits (716), Expect = 1.0e-75 Identity = 132/182 (72.53%), Postives = 157/182 (86.26%), Query Frame = 0
BLAST of Csor.00g275630 vs. TAIR 10
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11 ) HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21 Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0
BLAST of Csor.00g275630 vs. TAIR 10
Match: AT3G08690.2 (ubiquitin-conjugating enzyme 11 ) HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21 Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|