Csor.00g125870 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGTAAATGTCTCGAGAGTTCCTTTGGTTTTAAGTTGAGTTTTGGATATATCAATGAAATTATGAATCGACTTTGGTTTCTTCTGTTTTTCTGAGATGAATTTTGAAATTTAGGGTTCGAGAAGGTTTTAGGTGTATTTTTGTGCTTGTGGATTGAGATTTTAGCGTTGTTATGATGAAGCTTGATCGATTGAAGCTTCAAAATTATGTTTCGGTTATTTCTTATTCGAAGAAAGTAGATGAATCATGTGTATGAAGGTTGTACTGCGAAACATAATCGTTGATAATTTCTTGTTAGTAGCCATTTTCATATCGAAGGAGAAAGAATCGAACGTCTTGGAAACAATATGCACATGAACATCCAACGAATTTTGATCTCAGCAGTTAAGATGCAGGGATTATGACACTAATTCTTATGTCCTGGTTTCATTTTCTTCAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGGTAAGTCGACGAACGACTCACATGCATGTCTTTTAGTTCAACAGTTTTTCTCTAACATGATGCTGTTGAAATTATAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA ATGCTTTTGGAGATTCAGTGCATTCCGTCGTCATCAATGTATCCAACTCTTCGTATCGGAGATCGAATGCTTGTCGAGAAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCGGAGACCCGACACAGTGTGCTATAGCAATCTGGATGCAGAGAAGAAAACGTCGCTGTAAAGAGAGTTGTTGCACGAGCCAGAGATACGGTTGA MLLEIQCIPSSSMYPTLRIGDRMLVEKASYYIRNPSIDDIITFGDPTQCAIAIWMQRRKRRCKESCCTSQRYG Homology
BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: O04348 (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP1 PE=2 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 3.0e-07 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: Q8H0W1 (Chloroplast processing peptidase OS=Arabidopsis thaliana OX=3702 GN=PLSP1 PE=2 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 5.1e-07 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: Q9M9Z2 (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TPP2 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 5.1e-07 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: P72660 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB1 PE=3 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 7.4e-06 Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy Swiss-Prot
Match: P73157 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=lepB2 PE=3 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 0
BLAST of Csor.00g125870 vs. NCBI nr
Match: KAG6578946.1 (Thylakoidal processing peptidase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154 bits (389), Expect = 2.97e-47 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
BLAST of Csor.00g125870 vs. NCBI nr
Match: KAG7016470.1 (Chloroplast processing peptidase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 92.0 bits (227), Expect = 3.52e-21 Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_038885468.1 (chloroplast processing peptidase-like [Benincasa hispida]) HSP 1 Score: 89.7 bits (221), Expect = 2.50e-20 Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_022141360.1 (chloroplast processing peptidase-like isoform X2 [Momordica charantia]) HSP 1 Score: 88.2 bits (217), Expect = 5.39e-20 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. NCBI nr
Match: XP_022141359.1 (chloroplast processing peptidase-like isoform X1 [Momordica charantia]) HSP 1 Score: 88.2 bits (217), Expect = 1.07e-19 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1CHV1 (chloroplast processing peptidase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011778 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.61e-20 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1CIF2 (chloroplast processing peptidase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011778 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 5.16e-20 Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1JS29 (chloroplast processing peptidase-like OS=Cucurbita maxima OX=3661 GN=LOC111487833 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19 Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A6J1GPV1 (chloroplast processing peptidase-like OS=Cucurbita moschata OX=3662 GN=LOC111456402 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19 Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0
BLAST of Csor.00g125870 vs. ExPASy TrEMBL
Match: A0A1S3CRY6 (chloroplast processing peptidase-like OS=Cucumis melo OX=3656 GN=LOC103504090 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.77e-19 Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of Csor.00g125870 vs. TAIR 10
Match: AT2G30440.1 (thylakoid processing peptide ) HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0
BLAST of Csor.00g125870 vs. TAIR 10
Match: AT1G06870.1 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 54.7 bits (130), Expect = 3.7e-08 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0
BLAST of Csor.00g125870 vs. TAIR 10
Match: AT3G24590.1 (plastidic type i signal peptidase 1 ) HSP 1 Score: 54.7 bits (130), Expect = 3.7e-08 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|