Csor.00g187050 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g187050
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRNA polymerase sigma factor sigD
LocationCsor_Chr14: 6459834 .. 6463234 (+)
RNA-Seq ExpressionCsor.00g187050
SyntenyCsor.00g187050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAACTTCATCAACAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCTAAGGATTGGAGCTGCAAAAACCTTGAGAAAATGGAGCAGTGCTGTGGGGGTGCTGGGAATGTGGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAACGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGTGAGTCTTAGACTAAATTTGATAAGTTGTTCTTTAATCCTTGTCTATGCCAGCATTTACTTCTCTTGAGAGCTTTCTTGAGGGGAATACATATAATTTGTATACAAAAGACTGCAGAACTCTCTTCTTTTCCTTTTATGAAGTGCTTTTAAGGTATCATAGTAGAATTTAGTTTGTTGCATTAATATCCTTTAAATCATGTAAAATGTCTGCCATGTTCATATGTTAAAGAAAGCTTCTGCATATTATAAACTCTTCACAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATTATGAGCCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCGGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGTAGGTTAATGCACATATTACTCTCTTTTGGATTATTGTTTTCTGTAGTTTGCTTAAGGGTTTTATTTGTTTTTTGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGTAAGATACTGCCTCAATTCTCATTTGTCACATTTTGATTGTCATGTAGAACAAGTTTCAAATCGTACTTAGTTTTTTATGCAGATTTTGCATTTGTAGTTATGGCACTTCTGAATACATTGAGCATAAGAACATAATTTGTGTCCTGTTTACCTTTCTTTTATTCATTTATAGGGTCCTGGTCGGTCACTTTTCTGGGCCGGGATCGATAAGTGGAAGTCATAGAAAAGAGATCTTTCTTTTTGTATCTCAGATCAAGAGGAAGGGTAGCTTCTTAAGCTGATCTATATATATTTATATATATAAAAGAATTCGCTGTCTTTTAACCATACATACTTCTTTGTCAATGCTACGTTGGACCTAAAGGAAAAAGCGCTACTTAGCCCTACATTAGTAGAAGTCAGCGGCAGAGTTAGCCTACTAGAAAGCGCTCGTCCTAGGTTCTCTGTTTATCAGTAGGCTTCTTTGATATTTTTTTTTTTTTTGTCGTTACCCGTTCGGTCTTATTTTACTTGATTGGAGGCCCTTTTTGTGGGTTTCCTCCTTTTATGGGCTCTCTTTTTGTATGCCCTTGTGTTCTTTCATTTTTTTTTTTCAATAGAAACTTGGTTGTTTGTCAAACTAAGTTGGATTTATGATGAGAATCATATCGAAACCAATAAGAACAAGATGTGCCAAGGCGATAAGGAAGAGCCTTTTTGTTATATCACCTTTTTTTCACAAAAAATGGAAAGGTAATTTCTACAAAGTTTTTTGTTAGCTTAGGATTTGAAGTATGGGAAGGTGAGCGGGTAATAATTGAATGCTTGGTTAGCTCGCTGTGTGCAGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTGCCCACCCACAAGGAAGTCGCAAAGTATCTGAAAGTTCCCGTTTCGACTGTAAGACTGGTTACAGAAAGGAGTAAGCGCCCGATTTCAATCAATCAACCGGTAAATGACCGAGGTTGCTTAACCCTGCAGGTACCTTTTTACTTAAGTCGAGCTTAGTCTTTTACTGAAGGAATACTTACGTTTTTGTTTTTCTTCATATCTGCTGCTACAATGACATTGAATTGAAGTTTCAATCTTTCATGAAGGATGAGAGCCTTGTTTGCAACTGGCTCTTGATCTTTAGGCTCTCTTCCATTTGTTCATAAAACTAGTAATTGAAGACATTTCCCTCATCCTCATCTATCACGAAATAATGTTAAGTTCCTTTTCTTGAATAATATCTCGAAAGGAGAGGATGAACTTCTAAAAGGATTGTGTAACAACCAAAACTCACTGCTAGTAGATACTGTCTGTTTTGGCTCGTTACGTATCACCGTTAGCCTCACGGTTTAAGAACGTGTCTGTTAGGGAGAGATTTTCACATCCTTATAAGAAATGCTTTGTTTTCCCTCTTCAACTAATATGGGATCTCACAATCCACCCCCCTTGAGGCCCAGCGTCCTCGCTAGCACACTGTCCGGTACCTGGCTCTGATACCATTTGTAACAGTCCAAACCCACCGCTAGCAGATACTGTCCGCTTTGGCCTGTTACGTATCGCCGTCAGCCTCACGGTTTTAAAACATATATGTTAGGAAGAGGTTTTCACACCCTTATAAGGAATGTTTTGTTCCCTTTTCTAATTGATGTGGGATCTCACGGATTGCATATCAATAAGTCATATTTTCAATTAGATTGCTACACTTACGGGTTTGCTTATATATATATGTGCGCGTCCGCTAGTGCCTAAGCCATCTTATTCGACCTCAACTAATTTTATCGGACAACTAACTCACTCTGCAATATTTGGTATATGACACATGATTGGATATTCAATCCTAGGTTGATATCCACCATGGAAAATAGCAGCGATGAGATGCTGAAATACTTTATTCTTTATGTTGTGCAGGAGATCATGCCAGGGCCAGACAATTTGACACCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTAAGTAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

mRNA sequence

ATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAACTTCATCAACAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCTAAGGATTGGAGCTGCAAAAACCTTGAGAAAATGGAGCAGTGCTGTGGGGGTGCTGGGAATGTGGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAACGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATTATGAGCCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCGGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTGCCCACCCACAAGGAAGTCGCAAAGTATCTGAAAGTTCCCGTTTCGACTGTAAGACTGGTTACAGAAAGGAGTAAGCGCCCGATTTCAATCAATCAACCGGTAAATGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATTTGACACCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTAAGTAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

Coding sequence (CDS)

ATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAACTTCATCAACAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCTAAGGATTGGAGCTGCAAAAACCTTGAGAAAATGGAGCAGTGCTGTGGGGGTGCTGGGAATGTGGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAACGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATTATGAGCCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCGGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTGCCCACCCACAAGGAAGTCGCAAAGTATCTGAAAGTTCCCGTTTCGACTGTAAGACTGGTTACAGAAAGGAGTAAGCGCCCGATTTCAATCAATCAACCGGTAAATGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATTTGACACCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTAAGTAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

Protein sequence

MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHPPPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV
Homology
[Close]
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.9e-80
Identity = 188/450 (41.78%), Postives = 271/450 (60.22%), Query Frame = 0 

Query: 1   MATT--SSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTI-SPFSTKLAPNFINNDTL 60
           MATT  ++  +    SP +P+IS    P L+T    QP  ++ SPFS KL+   +  DT 
Sbjct: 1   MATTIPTTATATMCPSPPVPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDTT 60

Query: 61  THPPPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRR 120
                               V+++     + W  ++ ++             +KRRR+RR
Sbjct: 61  VD------------RVVDSSVMIK----PEKWGIQSEKR-------------RKRRRRRR 120

Query: 121 -----------KEVGETAEENWVALS-NGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTR 180
                      +  G  AE   +++   G  R G LS  EE +LCL LKE A++E   T 
Sbjct: 121 VGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTS 180

Query: 181 IMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGIS 240
           + E    E  +  LA   G K    + +L R +E+R+++ RCY +LV+SIA  YQGKG++
Sbjct: 181 VEEN---EMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLN 240

Query: 241 LQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMV 300
           LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+Q I++A+  KSRLV+LPG M ++ 
Sbjct: 241 LQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELT 300

Query: 301 ARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQ 360
           A++AEA+N L  KL R P+ +E+A++L + VS VRL  ERS+ P+S+++  +  G +TLQ
Sbjct: 301 AKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQ 360

Query: 361 EIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSL 420
           EI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGLNG+ P SFEEIGKSL
Sbjct: 361 EIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSL 414

Query: 421 NLSRETIRQTNIATLAKLKKSNILDYLKDY 436
            LSRE +RQ N   L KL+  + ++ LK Y
Sbjct: 421 KLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-50
Identity = 103/296 (34.80%), Postives = 181/296 (61.15%), Query Frame = 0 

Query: 141 LSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARES 200
           L + EE EL   + +   +E+ +  ++E  D  P++ + A A+ + L    R L+R R +
Sbjct: 104 LRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRA 163

Query: 201 RDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWI 260
           +D++++   +LV+SIA  Y  +G+S QDL QEG++GL++ AE+F+  +G+K STYA WWI
Sbjct: 164 KDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWI 223

Query: 261 RQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVR 320
           RQ I +A+  +SR +RLP H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R
Sbjct: 224 RQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLR 283

Query: 321 LVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKRE 380
            + + ++ PIS+  P+       L + +   D  TPE+ V + L++++L+ +L+TLS RE
Sbjct: 284 FIAKSAQLPISLETPIGKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRE 343

Query: 381 AHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYL 437
             +L L +GL+    ++ EEIG+  N++RE IRQ     L KL+  N    LK+Y+
Sbjct: 344 RDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.0e-49
Identity = 111/330 (33.64%), Postives = 194/330 (58.79%), Query Frame = 0 

Query: 108 AWKKRRRKRRKEVGETAEENWVALSN-GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRI 167
           A K RRR + K+   T +   + L   G +R   L + EE EL   + +  ++E+ + R+
Sbjct: 63  AAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLLELERVRERL 122

Query: 168 METQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISL 227
            E  + +P + + A A+   L      L   R ++D++++   +LV+SIA  Y  +G+S 
Sbjct: 123 SEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 182

Query: 228 QDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA 287
           QDL QEG++GL++ AE+F+  +G+K STYA WWIRQ I +A+  +SR +RLP H+ + ++
Sbjct: 183 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 242

Query: 288 RIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQE 347
           RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P+       L +
Sbjct: 243 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 302

Query: 348 IMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLN 407
            +   D  TPE+ V + L++++L+K+L++LS RE  +L L +GL+    ++ EEIG+  N
Sbjct: 303 FIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 362

Query: 408 LSRETIRQTNIATLAKLKKSNILDYLKDYL 437
           ++RE IRQ     L KL+  N    LK+Y+
Sbjct: 363 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-46
Identity = 107/317 (33.75%), Postives = 181/317 (57.10%), Query Frame = 0 

Query: 110 KKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMET 169
           +K   K++ + G   ++       GP     L++KEEAEL   ++   ++EK KT++   
Sbjct: 217 QKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQ 276

Query: 170 QDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDL 229
              EPT  + A AMG     +   + R R SR++LI    +LV+ IA  YQ +G++ QDL
Sbjct: 277 NGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDL 336

Query: 230 TQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIA 289
            QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ + SR +RLP ++  ++ +++
Sbjct: 337 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVS 396

Query: 290 EANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMP 349
           EA      + +  P+ +E+A ++ V    +  +   ++ P+S+ QP+      T QEI P
Sbjct: 397 EARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 456

Query: 350 GPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSR 409
                TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   +S  EIG+   LS+
Sbjct: 457 DSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSK 516

Query: 410 ETIRQTNIATLAKLKKS 427
           E +RQ     L +LK++
Sbjct: 517 ERVRQLESRALYRLKQN 533

[Close]
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-46
Identity = 108/346 (31.21%), Postives = 193/346 (55.78%), Query Frame = 0 

Query: 92  KNLEKMEQCCGGAGNVAWKKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAELCL 151
           K LEK           +  K++R   +EV       ++ ++    +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 152 CLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKL 211
            +++  ++E+ +T + E    +PT  Q A A G     + + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 212 VISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKK 271
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+Q + ++L  +
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 272 SRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPIS 331
           SR++RLP HM +   R+ EA   L  +  + P ++E+A+   + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 332 INQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLN 391
           ++Q +     L   E++  P+ +T E+++I++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 392 GQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 438
               ++ +EIG+ + +SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of Csor.00g187050 vs. NCBI nr
Match: KAG6581564.1 (RNA polymerase sigma factor sigD, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 860 bits (2222), Expect = 1.23e-314
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. NCBI nr
Match: XP_022935445.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita moschata] >KAG7018070.1 RNA polymerase sigma factor sigD, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 848 bits (2191), Expect = 6.52e-310
Identity = 431/437 (98.63%), Postives = 435/437 (99.54%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQ CGGAGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQ++EPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA+IAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTER+KRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. NCBI nr
Match: XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 848 bits (2190), Expect = 9.26e-310
Identity = 432/437 (98.86%), Postives = 433/437 (99.08%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQ CGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQD+EPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. NCBI nr
Match: XP_022982740.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima])

HSP 1 Score: 842 bits (2174), Expect = 2.54e-307
Identity = 428/437 (97.94%), Postives = 434/437 (99.31%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQ CGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQD+EPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 743 bits (1917), Expect = 3.51e-268
Identity = 379/437 (86.73%), Postives = 407/437 (93.14%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFINNDTLT P
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PP EAA VL VEAAREHVLV+A   S+DWSCKNLE+ME  CGG G VAWKK+RRKRRKEV
Sbjct: 61  PPPEAA-VLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           G  AEENW ALS+GPLRPG+LS KEEAELCLCLKEAAQ+E+ KTRIMETQ++EPTN+QLA
Sbjct: 121 GLKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAEANNHLG+KLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RPPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQE+K+LLNTLSKREAHIL+LYFGLNG+IP+SFEEIGKSLNLSRETIRQ N+ATL
Sbjct: 361 MRKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           +KLK ++ILDYLK+YLV
Sbjct: 421 SKLKNTDILDYLKEYLV 436

[Close]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match: A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)

HSP 1 Score: 848 bits (2191), Expect = 3.16e-310
Identity = 431/437 (98.63%), Postives = 435/437 (99.54%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQ CGGAGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQ++EPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA+IAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTER+KRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 842 bits (2174), Expect = 1.23e-307
Identity = 428/437 (97.94%), Postives = 434/437 (99.31%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQ CGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQD+EPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 729 bits (1883), Expect = 2.56e-263
Identity = 376/437 (86.04%), Postives = 402/437 (91.99%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN I+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PP EAA VLAVEAA EHVLVEA   S+DWS KN+EKME+ C G G VAWKK+RRKRRKEV
Sbjct: 61  PPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           G  AEENW+ALS+GPLRPG+LS KEEAELCLCLKEA  +E  KTRIMETQ++EPTNKQLA
Sbjct: 121 GVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTK G IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PT+KEVA+ LKV +ST+RLV ERSKRPISINQPVNDR CLTLQEIMPGPDNLTPENMV
Sbjct: 301 RPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQELK+LLNTLSKREA IL+LYFGLNG+IPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 MRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           +KLKK+++LDYLKDYLV
Sbjct: 421 SKLKKTDVLDYLKDYLV 436

[Close]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 723 bits (1866), Expect = 9.95e-261
Identity = 372/437 (85.13%), Postives = 403/437 (92.22%), Query Frame = 0 

Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFS+KL PNFI+ DTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120
           PP EAA VLAVEAA EHVLVEA   S+DWS KN+E+ME+ C G G VAWKK+RRKRRKEV
Sbjct: 61  PPPEAA-VLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180
           G  AEENW+ALS+GPLRPG+LS KEEAELCLCLKEA  +EK K+RIMETQ++EPTNKQLA
Sbjct: 121 GVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTK G IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEP+RGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLS
Sbjct: 241 AERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PT++EVA+ LKV VSTVRLV ERSKRPISINQPVNDR CLTLQEI+PGPDNLTPENMV
Sbjct: 301 RPPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMV 360

Query: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQELK+LLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ NIATL
Sbjct: 361 MRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATL 420

Query: 421 AKLKKSNILDYLKDYLV 437
           +KLKK+N+LDY+KDYLV
Sbjct: 421 SKLKKTNVLDYIKDYLV 436

[Close]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 701 bits (1809), Expect = 1.87e-251
Identity = 359/424 (84.67%), Postives = 390/424 (91.98%), Query Frame = 0 

Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHPPPSEAAAVLAVEA 73
           SPTLPSISLSSLPSLKTHLPQQPHF   PFS+KL PNFI+ DTLT PPP EAA VLAVEA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAA-VLAVEA 110

Query: 74  AREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEVGETAEENWVALSN 133
           A EHVLVEA   S+DWS KN+E+ME+ C G G VAWKK+RRKRRKEVG  AEENW+ALS+
Sbjct: 111 AGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSS 170

Query: 134 GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRV 193
           GPLRPG+LS KEEAELCLCLKEA  +EK K+RIMETQ++EPTNKQLAIAMGTK G IDR+
Sbjct: 171 GPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRI 230

Query: 194 LWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLS 253
           L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEP+RGHKLS
Sbjct: 231 LCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLS 290

Query: 254 TYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLK 313
           TYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLSR PT++EVA+ LK
Sbjct: 291 TYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLK 350

Query: 314 VPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLL 373
           V VSTVRLV ERSKRPISINQPVNDR CLTLQEI+PGPDNLTPENMV+RKLMKQELK+LL
Sbjct: 351 VRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLL 410

Query: 374 NTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLK 433
           NTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ NIATL+KLKK+N+LDY+K
Sbjct: 411 NTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIK 470

Query: 434 DYLV 437
           DYLV
Sbjct: 471 DYLV 473

[Close]
BLAST of Csor.00g187050 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-81
Identity = 188/450 (41.78%), Postives = 271/450 (60.22%), Query Frame = 0 

Query: 1   MATT--SSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTI-SPFSTKLAPNFINNDTL 60
           MATT  ++  +    SP +P+IS    P L+T    QP  ++ SPFS KL+   +  DT 
Sbjct: 1   MATTIPTTATATMCPSPPVPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDTT 60

Query: 61  THPPPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRR 120
                               V+++     + W  ++ ++             +KRRR+RR
Sbjct: 61  VD------------RVVDSSVMIK----PEKWGIQSEKR-------------RKRRRRRR 120

Query: 121 -----------KEVGETAEENWVALS-NGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTR 180
                      +  G  AE   +++   G  R G LS  EE +LCL LKE A++E   T 
Sbjct: 121 VGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTS 180

Query: 181 IMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGIS 240
           + E    E  +  LA   G K    + +L R +E+R+++ RCY +LV+SIA  YQGKG++
Sbjct: 181 VEEN---EMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLN 240

Query: 241 LQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMV 300
           LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+Q I++A+  KSRLV+LPG M ++ 
Sbjct: 241 LQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELT 300

Query: 301 ARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQ 360
           A++AEA+N L  KL R P+ +E+A++L + VS VRL  ERS+ P+S+++  +  G +TLQ
Sbjct: 301 AKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQ 360

Query: 361 EIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSL 420
           EI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGLNG+ P SFEEIGKSL
Sbjct: 361 EIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSL 414

Query: 421 NLSRETIRQTNIATLAKLKKSNILDYLKDY 436
            LSRE +RQ N   L KL+  + ++ LK Y
Sbjct: 421 KLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]
BLAST of Csor.00g187050 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 189.1 bits (479), Expect = 7.4e-48
Identity = 107/317 (33.75%), Postives = 181/317 (57.10%), Query Frame = 0 

Query: 110 KKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMET 169
           +K   K++ + G   ++       GP     L++KEEAEL   ++   ++EK KT++   
Sbjct: 217 QKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQ 276

Query: 170 QDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDL 229
              EPT  + A AMG     +   + R R SR++LI    +LV+ IA  YQ +G++ QDL
Sbjct: 277 NGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDL 336

Query: 230 TQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIA 289
            QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ + SR +RLP ++  ++ +++
Sbjct: 337 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVS 396

Query: 290 EANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMP 349
           EA      + +  P+ +E+A ++ V    +  +   ++ P+S+ QP+      T QEI P
Sbjct: 397 EARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 456

Query: 350 GPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSR 409
                TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   +S  EIG+   LS+
Sbjct: 457 DSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSK 516

Query: 410 ETIRQTNIATLAKLKKS 427
           E +RQ     L +LK++
Sbjct: 517 ERVRQLESRALYRLKQN 533

[Close]
BLAST of Csor.00g187050 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-47
Identity = 108/346 (31.21%), Postives = 193/346 (55.78%), Query Frame = 0 

Query: 92  KNLEKMEQCCGGAGNVAWKKRRRKRRKEVGETAEENWVALSNGPLRPGHLSSKEEAELCL 151
           K LEK           +  K++R   +EV       ++ ++    +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 152 CLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKL 211
            +++  ++E+ +T + E    +PT  Q A A G     + + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 212 VISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKK 271
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+Q + ++L  +
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 272 SRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPIS 331
           SR++RLP HM +   R+ EA   L  +  + P ++E+A+   + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 332 INQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSKREAHILTLYFGLN 391
           ++Q +     L   E++  P+ +T E+++I++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 392 GQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 438
               ++ +EIG+ + +SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of Csor.00g187050 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-33
Identity = 109/380 (28.68%), Postives = 181/380 (47.63%), Query Frame = 0 

Query: 78  VLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKK-------------RRRKRRKEVGETA 137
           +L++   L K W+    + +     G G +  KK             RR   +K+   T 
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 138 EENWVALSNGPLRPGH---------LSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPT 197
            +    +S+G    G+         LS  E   L   +K   +++  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 198 NKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNI 257
           ++QLA+++      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 258 GLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHL 317
           GLL+G E+F+ ++G ++STY YWWIRQ + +AL   SR +RLP H+ + +  I  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 318 GIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLT 377
             K    P+   +A+ L +    VR  TE   +  S+     DR        +PG  + +
Sbjct: 355 QEK-GITPSIDRIAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 378 ----------PENMVIRKLMKQELKKLLN-TLSKREAHILTLYFGLNGQIPQSFEEIGKS 425
                     P +      +K+E+ KL++ TL +RE  I+ LY+GL+ +   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474

[Close]
BLAST of Csor.00g187050 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-33
Identity = 94/298 (31.54%), Postives = 153/298 (51.34%), Query Frame = 0 

Query: 143 SKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLAIAMGTKLGYIDRVLWRARESRD 202
           S+ E E+   +K  A +E+ +T++ E      +    A A G     + R L      RD
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 203 RLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ 262
            L++    LV+ +A  Y+G GI+ +DL Q G +G+L+GAERF+  RG+K STY  +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394

Query: 263 TIIQALDKKSRLVRLPGHMGQMVARIAEANNHL----GIKLSRVPTHKEVAKYLKVPVST 322
           ++   + + +R V +P  + + +  I +A   L    GIK +     +E+AK     V  
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYA---ADEEIAKLTGHSVKK 454

Query: 323 VRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKKLLNTLSK 382
           +R   +  K   SI++ V D       E  P     +PE  V+R+  ++++  LL  L  
Sbjct: 455 IRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEP 514

Query: 383 REAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYL 437
           RE  ++ L +GL    P+S EEIGK L +S+E IR+     +AKL+     + L+ YL
Sbjct: 515 REKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

The following BLAST results are available for this feature:
BLAST of Csor.00g187050 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZSL61.9e-8041.78RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
P380232.0e-5034.80RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ... [more]
P266835.0e-4933.64RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... [more]
Q9LD951.0e-4633.75RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
O220563.0e-4631.21RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV... [more]
BLAST of Csor.00g187050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581564.11.23e-314100.00RNA polymerase sigma factor sigD, chloroplastic, partial [Cucurbita argyrosperma... [more]
XP_022935445.16.52e-31098.63RNA polymerase sigma factor sigD, chloroplastic [Cucurbita moschata] >KAG7018070... [more]
XP_023528248.19.26e-31098.86RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022982740.12.54e-30797.94RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima][more]
XP_038906215.13.51e-26886.73RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida][more]
BLAST of Csor.00g187050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FAN33.16e-31098.63RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J3P01.23e-30797.94RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L9T02.56e-26386.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1[more]
A0A5D3BP279.95e-26185.13RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CFL71.87e-25184.67RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Csor.00g187050 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13730.11.3e-8141.78sigma factor 4 [more]
AT2G36990.17.4e-4833.75RNApolymerase sigma-subunit F [more]
AT1G08540.12.2e-4731.21RNApolymerase sigma subunit 2 [more]
AT1G64860.11.8e-3328.68sigma factor A [more]
AT3G53920.13.0e-3331.54RNApolymerase sigma-subunit C [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 228..241
score: 58.71
coord: 252..260
score: 74.91
coord: 376..388
score: 37.67
coord: 397..412
score: 39.64
coord: 412..423
score: 40.75
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 287..359
e-value: 1.1E-10
score: 41.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 277..352
e-value: 3.1E-9
score: 39.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 359..437
e-value: 1.6E-19
score: 71.3
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 204..273
e-value: 8.5E-20
score: 70.3
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 372..425
e-value: 8.3E-11
score: 41.2
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 92..276
e-value: 9.2E-34
score: 119.5
NoneNo IPR availablePANTHERPTHR30603:SF47RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTICcoord: 4..436
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 4..436
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 366..424
e-value: 1.67936E-8
score: 48.6398
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 200..425
e-value: 4.7E-31
score: 105.6
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 335..426
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 277..348
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 138..273

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g187050.m01Csor.00g187050.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:2000142 regulation of DNA-templated transcription, initiation
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0016987 sigma factor activity
molecular_function GO:0003700 DNA-binding transcription factor activity