Csor.00g231940 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g231940
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 14574885 .. 14575232 (+)
RNA-Seq ExpressionCsor.00g231940
SyntenyCsor.00g231940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATTTCTAAAGGGCTCTCATTTCTGGGGCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGTGGGGAACACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGCTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATTGAGACAACTTCTCCAGAGGAACCGGCGAACCAAAAAGTCGTCGTCTTGGGGCATTGA

mRNA sequence

ATGCCAATTTCTAAAGGGCTCTCATTTCTGGGGCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGTGGGGAACACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGCTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATTGAGACAACTTCTCCAGAGGAACCGGCGAACCAAAAAGTCGTCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGCCAATTTCTAAAGGGCTCTCATTTCTGGGGCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGTGGGGAACACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGCTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATTGAGACAACTTCTCCAGAGGAACCGGCGAACCAAAAAGTCGTCGTCTTGGGGCATTGA

Protein sequence

MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGEHCHHSGRMAAQTVDEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH
Homology
BLAST of Csor.00g231940 vs. NCBI nr
Match: KAG6589281.1 (hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (584), Expect = 1.10e-75
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGEHCHHSGRMAAQTVD 60
           MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGEHCHHSGRMAAQTVD
Sbjct: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGEHCHHSGRMAAQTVD 60

Query: 61  EDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH 115
           EDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH
Sbjct: 61  EDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH 115

BLAST of Csor.00g231940 vs. NCBI nr
Match: KAG6572424.1 (hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (253), Expect = 3.01e-25
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 13  VAIFICLLFIEVADAHSGHSGTHA----VEKPCPGG----GEHCHHSGRMAAQTV---DE 72
           +AIFI LLFI++A A   H G HA    VE  CPGG    G+HC+H GR+ +      D+
Sbjct: 4   LAIFISLLFIKLAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITSVNYGEDDD 63

Query: 73  DDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH 115
           DDDFDDTYK   K  MAMS+SEST+DAE+ AV +E+E  SPEE  + KV VLGH
Sbjct: 64  DDDFDDTYKVLGKLSMAMSVSESTDDAEKEAVGLELEDISPEEQLSDKVTVLGH 117

BLAST of Csor.00g231940 vs. NCBI nr
Match: KAA0061659.1 (hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.81e-16
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GEHCHHSG 60
           M ISK LSF+ ++AI +     +VADA S H G HAV    E  CPGG    G+HC H G
Sbjct: 1   MGISKVLSFVCVIAILVS----KVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 60

Query: 61  RMAAQTV-----DEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPAN 115
           R+++        D+DD+FDD YK  V G++++S+S    DAE++A  +E+ T SP++  +
Sbjct: 61  RISSVNYNENDDDDDDEFDDRYK--VVGKLSVSVSP---DAEDQADGLELGTISPDQQLS 119

BLAST of Csor.00g231940 vs. NCBI nr
Match: KAE8647343.1 (hypothetical protein Csa_003811 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 2.39e-14
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GEHCHHSG 60
           M ISKGLSF+ ++AI IC    +VADA + H G HAV    E  CPGG    G+HC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 61  RMAAQTV---DEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIET 99
           R+++      D+DD+FDDTYK  V G+++ S+S   E AE+RA  +E+E+
Sbjct: 64  RISSVNYNENDDDDEFDDTYK--VVGKLSASLS--PEAAEDRADGLELES 105

BLAST of Csor.00g231940 vs. NCBI nr
Match: KAE8075603.1 (hypothetical protein FH972_014299 [Carpinus fangiana])

HSP 1 Score: 48.1 bits (113), Expect = 3.12e-04
Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSG--HSGTHAV---EKPCPG----GGEHCHHS 60
           M IS+G+   GL+ +F+CLL I+ ++A     +   HAV   +  C G     G+HC   
Sbjct: 1   MTISRGVVLFGLMTLFVCLLLIKASEADDSAEYPPIHAVKHDDSKCEGIHNEEGDHCREE 60

Query: 61  GRMAAQTVDEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVV 115
                +    DDD DD+YK  V  RMA+S  E        A  +     S  E  + +VV
Sbjct: 61  EEEEEEEEVLDDDVDDSYK--VVNRMALSYHE--------AGSVNPFYDSDTELLDNRVV 114

BLAST of Csor.00g231940 vs. ExPASy TrEMBL
Match: A0A0A0KE60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.12e-18
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GEHCHHSG 60
           M ISKGLSF+ ++AI IC    +VADA + H G HAV    E  CPGG    G+HC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 61  RMAAQTV---DEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQK 115
           R+++      D+DD+FDDTYK  V G+++ S+S   E AE+RA  +E+   SP +  + K
Sbjct: 64  RISSVNYNENDDDDEFDDTYK--VVGKLSASLS--PEAAEDRADGLELGIFSPHDRLSVK 121

BLAST of Csor.00g231940 vs. ExPASy TrEMBL
Match: A0A5A7V7L4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00280 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.84e-16
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GEHCHHSG 60
           M ISK LSF+ ++AI +     +VADA S H G HAV    E  CPGG    G+HC H G
Sbjct: 1   MGISKVLSFVCVIAILVS----KVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 60

Query: 61  RMAAQTV-----DEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPAN 115
           R+++        D+DD+FDD YK  V G++++S+S    DAE++A  +E+ T SP++  +
Sbjct: 61  RISSVNYNENDDDDDDEFDDRYK--VVGKLSVSVSP---DAEDQADGLELGTISPDQQLS 119

BLAST of Csor.00g231940 vs. ExPASy TrEMBL
Match: A0A5N6R9F8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014299 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.51e-04
Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSG--HSGTHAV---EKPCPG----GGEHCHHS 60
           M IS+G+   GL+ +F+CLL I+ ++A     +   HAV   +  C G     G+HC   
Sbjct: 1   MTISRGVVLFGLMTLFVCLLLIKASEADDSAEYPPIHAVKHDDSKCEGIHNEEGDHCREE 60

Query: 61  GRMAAQTVDEDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVV 115
                +    DDD DD+YK  V  RMA+S  E        A  +     S  E  + +VV
Sbjct: 61  EEEEEEEEVLDDDVDDSYK--VVNRMALSYHE--------AGSVNPFYDSDTELLDNRVV 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589281.11.10e-75100.00hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572424.13.01e-2554.39hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0061659.13.81e-1642.97hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa][more]
KAE8647343.12.39e-1447.27hypothetical protein Csa_003811 [Cucumis sativus][more]
KAE8075603.13.12e-0433.87hypothetical protein FH972_014299 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
A0A0A0KE602.12e-1846.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1[more]
A0A5A7V7L41.84e-1642.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5N6R9F81.51e-0433.87Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014299 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g231940.m01Csor.00g231940.m01mRNA