Csor.00g260090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g260090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	GATA transcription factor 16-like
Location	Csor_Chr11: 9485209 .. 9486318 (-)
RNA-Seq Expression	Csor.00g260090
Synteny	Csor.00g260090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGATGGATGTCACACAAAAGGTTGGTTTCACAGCGCTTCATACTAATCTAATCCCCTCTTCTCTGTTTTCCACAACTGAGGGAGCAATCATTACATTAATTCCACTTCTCTTCTTCAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGGTTTCTCTTATCGCCCTTTTTCTTCTTTTTCCCTCTGTTTTCATCTTCTGTTTCATCTTCAGCTTCTTCTTAGTATGTCAGATTCATGGTTTCTTTCTGATTATTCATTTCTTCTGGGTTTTTTTTTTCGTATCCAATATCGTTTTAGCTTTCTGTTCTGTTTCTGGTTATGTTCTTCTTAATTCTTGAAACTGGGTTTCTACTCTGTTCATGTACCTGTTCTTCTTCGATCATTTTGTTTGATTTCTACTCTGTTCTGTTTCAGATTCATGGTTTGTTTGATTTTTAGCTTCTGATATGGATTCATGTCCGTCTTTGGTTCTATTTGTATTGGGTTTCTCCACTATCTATCAAACCTATCTACCCGTTTCCGCAATTGTTCTTAATGTTCATCTATTTTCTCATCAATACATTCATAGTTCTCTCTAGTTTTTTTTCTACTTATCCCTCGTATTTAGCTTCTAAAGAATGAAAAACTCAAAAAGAAAAACCTCTGTTCCCCTATATGGGATTTTTGCAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA

mRNA sequence

ATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA

Coding sequence (CDS)

ATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA

Protein sequence

MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA

Homology

[Close]

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-18
Identity = 73/177 (41.24%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 3   MMDVTQKGLL-----LRTQLQD---QTN-------KCCVDCNTTKTPLWRGGPAGPKSLC 62
           M+D ++K LL     ++T+ +D   Q N       K C DC T+KTPLWRGGP GPKSLC
Sbjct: 1   MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLC 60

Query: 63  NACGIRFRKRRISTNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGE 122
           NACGIR RK+R                               G T  N       SG G 
Sbjct: 61  NACGIRNRKKR------------------------------RGGTEDNKKLKKSSSGGGN 120

Query: 123 EDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ-GKLGEEEQAAVLLMALSCGSVFA 164
              GE  SL+  +M       + ++  S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 121 RKFGE--SLKQSLM------DLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPHSSTAMGA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  + +   G 
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFG- 100

Query: 83  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ 142
                                             SL+ R +M    EV++ ++ +  Q++
Sbjct: 101 ---------------------------------DSLKQR-LMELGREVMMQRSTAENQRR 149

Query: 143 GKLGEEEQAAVLLMALS-CGSVFA 164
            KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIST--NRGYVRKKER------- 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +    R   +KK R       
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  ---PHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEV 140
               H +     ++                +   S     + G  + L +   +P     
Sbjct: 100 LNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVP----- 159

Query: 141 VVVQNASSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 164
             V   S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 --VMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.4e-14
Identity = 55/151 (36.42%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 13  LRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERP 72
           +R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R 
Sbjct: 16  VRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRS 75

Query: 73  HSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQ 132
           H S A   ++  +SS  G                                          
Sbjct: 76  HKSLASKKINLLSSSHGGV----------------------------------------- 120

Query: 133 NASSVQKQGKLGEEEQAAVLLMALSCGSVFA 164
              +V+K+  L EEEQAA+ L+ LSC SV A
Sbjct: 136 ---AVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR 59
           + C DCNTTKTPLWR GP GPKSLCNACGIR RK R
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211

[Close]

BLAST of Csor.00g260090 vs. NCBI nr
Match: KAG6588601.1 (GATA transcription factor 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316 bits (810), Expect = 1.35e-108
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120
           TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV
Sbjct: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120

Query: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_022931670.1 (GATA transcription factor 16-like [Cucurbita moschata])

HSP 1 Score: 312 bits (799), Expect = 6.45e-107
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMM+VTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120
           TNRGYVRKKERP+SSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV
Sbjct: 61  TNRGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120

Query: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_023530140.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300 bits (767), Expect = 5.61e-102
Identity = 160/167 (95.81%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGLL RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSS-GTTAINTTT---SGGGSGDGEEDLGECRSL 120
           TNRGYVRKKERPHSSTAM AVSATTSSSS GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           RMRVMMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167

[Close]

BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_022989484.1 (GATA transcription factor 16-like [Cucurbita maxima])

HSP 1 Score: 286 bits (731), Expect = 1.22e-96
Identity = 149/163 (91.41%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGL  RTQLQDQT KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLSPRTQLQDQTKKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120
           TNRGYVRK+ERPHSST       ++SSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV
Sbjct: 61  TNRGYVRKRERPHSSTT------SSSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120

Query: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           MMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 MMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 157

[Close]

BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_038880207.1 (GATA transcription factor 17-like [Benincasa hispida])

HSP 1 Score: 190 bits (483), Expect = 1.83e-58
Identity = 119/173 (68.79%), Postives = 128/173 (73.99%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMD+ QKGLLL         KCCVDC TTKTPLWRGGP GPKSLCNACGIRFRKRRIS
Sbjct: 21  MGMMDLRQKGLLLAD------TKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRIS 80

Query: 61  T---NRGYVRKKERPHS--STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRS 120
           T   NRGY RK+ER H+  ST    VSATTSS+  TT   TTTSG G GDG+E+LGEC S
Sbjct: 81  TIGTNRGYDRKRERVHNNGSTITTTVSATTSSTGTTT---TTTSGSGDGDGDENLGECGS 140

Query: 121 LRMRVMMPFREEVVVVQNA-SSVQKQG-----KLGEEE-QAAVLLMALSCGSV 161
           L MR+MM   EEV+VVQN  SSV+KQ      KLGEEE QAAV LMALSCGSV
Sbjct: 141 LGMRLMMALEEEVMVVQNLPSSVKKQRFQRERKLGEEEKQAAVSLMALSCGSV 184

[Close]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1F048 (GATA transcription factor 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437809 PE=4 SV=1)

HSP 1 Score: 312 bits (799), Expect = 3.12e-107
Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMM+VTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120
           TNRGYVRKKERP+SSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV
Sbjct: 61  TNRGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120

Query: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1JPG4 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111486528 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 5.93e-97
Identity = 149/163 (91.41%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGL  RTQLQDQT KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLSPRTQLQDQTKKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120
           TNRGYVRK+ERPHSST       ++SSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV
Sbjct: 61  TNRGYVRKRERPHSSTT------SSSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRV 120

Query: 121 MMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           MMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 MMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 157

[Close]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C1I3 (GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 8.40e-55
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDV ++    + +++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+S
Sbjct: 1   MGMMDVLRRKN--KERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVS 60

Query: 61  T---NRGYVRKKERPHS--STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEE-DLGECR 120
           T   NRG  RK+E+ HS   +   A+SATTSSS+ T A   + +GG  G+ EE DLGEC 
Sbjct: 61  TIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSA-TAADAKSNNGGADGEEEEEDLGECG 120

Query: 121 SLRMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           SLRMR+MM   EEVVV QN S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 121 SLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 166

[Close]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C1Y1 (GATA transcription factor 16-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 1.23e-54
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDV ++   +  +++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+S
Sbjct: 1   MGMMDVLRRKNKVE-RVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVS 60

Query: 61  T---NRGYVRKKERPHS--STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEE-DLGECR 120
           T   NRG  RK+E+ HS   +   A+SATTSSS+ T A   + +GG  G+ EE DLGEC 
Sbjct: 61  TIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSA-TAADAKSNNGGADGEEEEEDLGECG 120

Query: 121 SLRMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           SLRMR+MM   EEVVV QN S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 121 SLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 167

[Close]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C5A4 (GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 4.52e-54
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDV ++    + +++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+S
Sbjct: 55  MGMMDVLRRKN--KERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVS 114

Query: 61  T---NRGYVRKKERPHS--STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEE-DLGECR 120
           T   NRG  RK+E+ HS   +   A+SATTSSS+ T A   + +GG  G+ EE DLGEC 
Sbjct: 115 TIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSA-TAADAKSNNGGADGEEEEEDLGECG 174

Query: 121 SLRMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163
           SLRMR+MM   EEVVV QN S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 175 SLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 220

[Close]

BLAST of Csor.00g260090 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-19
Identity = 73/177 (41.24%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 3   MMDVTQKGLL-----LRTQLQD---QTN-------KCCVDCNTTKTPLWRGGPAGPKSLC 62
           M+D ++K LL     ++T+ +D   Q N       K C DC T+KTPLWRGGP GPKSLC
Sbjct: 1   MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLC 60

Query: 63  NACGIRFRKRRISTNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGE 122
           NACGIR RK+R                               G T  N       SG G 
Sbjct: 61  NACGIRNRKKR------------------------------RGGTEDNKKLKKSSSGGGN 120

Query: 123 EDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ-GKLGEEEQAAVLLMALSCGSVFA 164
              GE  SL+  +M       + ++  S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 121 RKFGE--SLKQSLM------DLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Csor.00g260090 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPHSSTAMGA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  + +   G 
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFG- 100

Query: 83  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ 142
                                             SL+ R +M    EV++ ++ +  Q++
Sbjct: 101 ---------------------------------DSLKQR-LMELGREVMMQRSTAENQRR 149

Query: 143 GKLGEEEQAAVLLMALS-CGSVFA 164
            KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Csor.00g260090 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIST--NRGYVRKKER------- 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +    R   +KK R       
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  ---PHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEV 140
               H +     ++                +   S     + G  + L +   +P     
Sbjct: 100 LNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVP----- 159

Query: 141 VVVQNASSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 164
             V   S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 --VMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Csor.00g260090 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-15
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR---ISTNRGYVRKKERPHSSTA 80
           T K CVDC T++TPLWRGGPAGPKSLCNACGI+ RK+R   +   +  ++ K +  S+  
Sbjct: 35  TKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSK--SNNN 94

Query: 81  MGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSV 140
           +G  S    +  G   +N   +    G  +   GE  +++ ++            N  +V
Sbjct: 95  LGLESRNVKTGKG-EPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNNNKKNV 154

Query: 141 QKQG------------------------KLGEEEQAAVLLMALSCG 160
           ++ G                        KLGEEE+AAVLLMALSCG
Sbjct: 155 KRVGRFLDFGFKVPAMKRSAVEKKRLWRKLGEEERAAVLLMALSCG 197

[Close]

BLAST of Csor.00g260090 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-15
Identity = 55/151 (36.42%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 13  LRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERP 72
           +R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R 
Sbjct: 16  VRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRS 75

Query: 73  HSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQ 132
           H S A   ++  +SS  G                                          
Sbjct: 76  HKSLASKKINLLSSSHGGV----------------------------------------- 120

Query: 133 NASSVQKQGKLGEEEQAAVLLMALSCGSVFA 164
              +V+K+  L EEEQAA+ L+ LSC SV A
Sbjct: 136 ---AVKKRRSLKEEEQAALCLLLLSCSSVLA 120

The following BLAST results are available for this feature:

BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ10	6.5e-18	41.24	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LG10	4.2e-17	41.67	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9LIB5	2.3e-15	38.61	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	7.4e-14	36.42	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	3.4e-11	80.56	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of Csor.00g260090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588601.1	1.35e-108	100.00	GATA transcription factor 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931670.1	6.45e-107	98.77	GATA transcription factor 16-like [Cucurbita moschata]	[more]
XP_023530140.1	5.61e-102	95.81	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989484.1	1.22e-96	91.41	GATA transcription factor 16-like [Cucurbita maxima]	[more]
XP_038880207.1	1.83e-58	68.79	GATA transcription factor 17-like [Benincasa hispida]	[more]

BLAST of Csor.00g260090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F048	3.12e-107	98.77	GATA transcription factor 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437809 ...	[more]
A0A6J1JPG4	5.93e-97	91.41	GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111486528 PE...	[more]
A0A6J1C1I3	8.40e-55	63.91	GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C1Y1	1.23e-54	63.91	GATA transcription factor 16-like isoform X3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C5A4	4.52e-54	63.91	GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of Csor.00g260090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49300.1	4.6e-19	41.24	GATA transcription factor 16	[more]
AT3G06740.1	3.0e-18	41.67	GATA transcription factor 15	[more]
AT3G16870.1	1.6e-16	38.61	GATA transcription factor 17	[more]
AT4G16141.1	4.0e-15	35.54	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	5.3e-15	36.42	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 19..80 e-value: 2.1E-15 score: 67.2
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 25..58 e-value: 9.0E-18 score: 63.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 25..50
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 19..55 score: 12.703237
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 25..72 e-value: 6.6018E-14 score: 60.8494
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 19..86 e-value: 1.8E-16 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..110
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 4..163
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 4..163
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 16..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g260090.m01	Csor.00g260090.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding