Csor.00g074270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g074270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	lamin-like protein
Location	Csor_Chr11: 7124926 .. 7125979 (+)
RNA-Seq Expression	Csor.00g074270
Synteny	Csor.00g074270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTGTAAGTTTCTTTATCTCTTTCGTATTTTTTCCTTCTTTCTTATTTTGAAAATCGGGTCGAGTCGAGTCGAATCCGGCAAATTTGTGAGCTTTTTCGAACAGTTTCAATTAATTTTGGTTCTTCAACTTCGTACTGCCAATTTAGTCCCTAAATTTTTCATATTTATAATAATTTAAGGGTCGTGATTCTTGTATATCATTATTTTTTTCATGAATATCCAATGTTTTTTTCTTTTATTTTTTTTAATTTTAAGAAAATATTGATATTATTCACAAATAAAAAAATATATATCACCCGAAATTAAAAGATTAAAAATGGATAAAGTTTTGTTAGTGACCAATGATGCTAAATTAAAAAATATATATTTTGTTTTTTTTTTTCTTTTTATAAATATTTTTGAGTTTGATTAATTTGGTAGAAAAGTATTAAGTGAAATTTAAAAAATTTAAGATATTTTTGAAATATTTTAAAGTTTTAAGGGTGTTTTTTAAAATTTGTAGGACGAAATAATTAATTGTTAAAATCGTATATTAATATTTTGTTTGAAAAGATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCCGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

mRNA sequence

ATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCCGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

Coding sequence (CDS)

ATGGAGGAAATGAGAGTGAGGGTGATAATGGTAATAGTGGCAATGGCTTGGGCAACACTTGCAATGGGAGAGAAGCTTCATAAGGTGGGCAATTCTAAAGGATGGAACCCTAATCTCAATTATACCCTTTGGTCCTCCTCTCACCGTTTCTATCTCGGTGATTGGCTTTATTTCGTGTTCGACAAGCGATACTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGAGAAGGAGTTCATAAAGAACATTACAAGAGGTGGACGAGACGTGTTTCAGCTGACGGAGCTGCGGCCCTATTTCTTCATTGCCGGCGGCGGCTACTGCTTTCAAGGAATGAAACTTGCTGTCTTAGTGTGCCCGACGGCCGTAGCCCCGGCCGCTCCGCCGTCTGCCACTCCCATAAGTGGCGCGTCTTTGTCAAACCCCACCTGTTGGATTATGAATGCCCTTATGCTTTTTGTTGCTCTTTTCTTAGTGATTAAGATTGAGTGA

Protein sequence

MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE

Homology

[Close]

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 60
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 61  VFDKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMK 120
           VFD+  +N+LEVNKT YE C     I+N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 121 LAVLVCPTAVAPAAPPSATPI 139
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

[Close]

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 29  VGNSKGW--NPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFIKN 88
           VG S  W  NP  NY  WS  +RF + D LYF + K   +VLEVNK  Y++CN K  IK 
Sbjct: 33  VGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNTKNPIKR 92

Query: 89  ITRGGRDVFQLTELRPYFFIAGG-GYCFQGMKLAVLVC-----PTAVAP--AAPPSATP 138
           +  G  ++  L    P++FI+G    C +G KL V+V       TA +P  AAP S+TP
Sbjct: 93  VDDGDSEI-SLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTAQSPHAAAPGSSTP 150

[Close]

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot
Match: O82081 (Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 10  MVIVAMAWATLAMGEKL---HKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYN 69
           M+I+    AT  +G  +   H +G   GW    +   W++   F +GD L F +   +++
Sbjct: 6   MLIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHD 65

Query: 70  VLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTA 129
           V+EV K  ++SC   + +     G   V   T  + YF     G+C QGMKL V V PTA
Sbjct: 66  VVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVVPTA 125

Query: 130 -VAPAAP-PSATP 138
            VAP AP P+  P
Sbjct: 126 TVAPTAPLPNTVP 138

[Close]

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot
Match: Q96316 (Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 28  KVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEFIKNI 87
           KVG+  GW  NL+YT+W +   F +GD L FV+    ++V  V+K  Y++C+     +N 
Sbjct: 25  KVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLS-HSVSVVDKAGYDNCDSSGATQNF 84

Query: 88  TRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAP--PSATPISGAS 143
             G   +   T    +F     G+C  GMKLAV V   A +P+ P  P +TP + +S
Sbjct: 85  ADGDTKIDLTTVGTMHFLCPTFGHCKNGMKLAVPVLAAAPSPSTPSSPPSTPSTPSS 140

[Close]

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot
Match: P80728 (Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 26  LHKVGNSKGWNPNL--NYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKEF 85
           +HKVG+S GW   +  +Y  W+SS++F++GD L F ++ +++NVL+V++  ++SCN    
Sbjct: 3   VHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSP 62

Query: 86  IKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCP 125
             + T  G D   L     ++F+ G  G+C  G K+ + V P
Sbjct: 63  AASYT-SGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP 103

[Close]

BLAST of Csor.00g074270 vs. NCBI nr
Match: XP_022926318.1 (lamin-like protein [Cucurbita moschata] >KAG6588504.1 Lamin-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022335.1 Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (859), Expect = 6.17e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167

[Close]

BLAST of Csor.00g074270 vs. NCBI nr
Match: XP_022970103.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 322 bits (826), Expect = 6.66e-111
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWAT AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATDAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVN+TSYE C EKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNETSYEGCTEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167
           LVCPTAVAPAAPPSATPIS ASLSNPTCWIMNAL+LFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISRASLSNPTCWIMNALLLFVALFLVIKIE 167

[Close]

BLAST of Csor.00g074270 vs. NCBI nr
Match: XP_023530289.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (819), Expect = 7.00e-110
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVA+AWA +AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAIAWARVAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVNKTSYESCNEKEFI NITRGGRDVFQLTELRPYFFIAGGGYCF+GMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFINNITRGGRDVFQLTELRPYFFIAGGGYCFEGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVI 164
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNAL+LFVALFLVI
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALLLFVALFLVI 164

[Close]

BLAST of Csor.00g074270 vs. NCBI nr
Match: KAA0053800.1 (lamin-like protein [Cucumis melo var. makuwa] >TYK25601.1 lamin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (534), Expect = 2.04e-66
Identity = 106/146 (72.60%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 23  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 82
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 19  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 78

Query: 83  FIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGAS 142
           FIKNITRGGRDVFQL+EL PYFFI GGGYCFQGMKLAV V     APA  P+A+  SG  
Sbjct: 79  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 138

Query: 143 LS----NPT--CWIMNALMLFVALFL 162
            S    NPT  C ++NAL+LFVA+FL
Sbjct: 139 ASFLSNNPTFCCSVLNALLLFVAIFL 164

[Close]

BLAST of Csor.00g074270 vs. NCBI nr
Match: XP_008443357.1 (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 210 bits (534), Expect = 3.56e-66
Identity = 106/146 (72.60%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 23  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 82
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 36  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 95

Query: 83  FIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGAS 142
           FIKNITRGGRDVFQL+EL PYFFI GGGYCFQGMKLAV V     APA  P+A+  SG  
Sbjct: 96  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 155

Query: 143 LS----NPT--CWIMNALMLFVALFL 162
            S    NPT  C ++NAL+LFVA+FL
Sbjct: 156 ASFLSNNPTFCCSVLNALLLFVAIFL 181

[Close]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL
Match: A0A6J1EHP8 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433505 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 2.99e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167
           LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167

[Close]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL
Match: A0A6J1I2W1 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469092 PE=4 SV=1)

HSP 1 Score: 322 bits (826), Expect = 3.22e-111
Identity = 161/167 (96.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           MEEMRVRVIMVIVAMAWAT AMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF
Sbjct: 1   MEEMRVRVIMVIVAMAWATDAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120
           DKRYYNVLEVN+TSYE C EKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV
Sbjct: 61  DKRYYNVLEVNETSYEGCTEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAV 120

Query: 121 LVCPTAVAPAAPPSATPISGASLSNPTCWIMNALMLFVALFLVIKIE 167
           LVCPTAVAPAAPPSATPIS ASLSNPTCWIMNAL+LFVALFLVIKIE
Sbjct: 121 LVCPTAVAPAAPPSATPISRASLSNPTCWIMNALLLFVALFLVIKIE 167

[Close]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL
Match: A0A5A7UEY9 (Lamin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007600 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 9.88e-67
Identity = 106/146 (72.60%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 23  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 82
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 19  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 78

Query: 83  FIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGAS 142
           FIKNITRGGRDVFQL+EL PYFFI GGGYCFQGMKLAV V     APA  P+A+  SG  
Sbjct: 79  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 138

Query: 143 LS----NPT--CWIMNALMLFVALFL 162
            S    NPT  C ++NAL+LFVA+FL
Sbjct: 139 ASFLSNNPTFCCSVLNALLLFVAIFL 164

[Close]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL
Match: A0A1S3B8J9 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.72e-66
Identity = 106/146 (72.60%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 23  GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESCNEKE 82
           GE LHKVGNS+GW+PN NYT WS+SH FYLGDWLYFVFDKRYYNVLEVNK SYE CN+K+
Sbjct: 36  GEVLHKVGNSEGWSPNQNYTHWSTSHHFYLGDWLYFVFDKRYYNVLEVNKRSYEDCNDKD 95

Query: 83  FIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTAVAPAAPPSATPISGAS 142
           FIKNITRGGRDVFQL+EL PYFFI GGGYCFQGMKLAV V     APA  P+A+  SG  
Sbjct: 96  FIKNITRGGRDVFQLSELHPYFFIGGGGYCFQGMKLAVYVSAVDSAPAPSPAASNKSGGG 155

Query: 143 LS----NPT--CWIMNALMLFVALFL 162
            S    NPT  C ++NAL+LFVA+FL
Sbjct: 156 ASFLSNNPTFCCSVLNALLLFVAIFL 181

[Close]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL
Match: A0A0A0LF66 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 1.52e-65
Identity = 111/162 (68.52%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 10  MVIVAMAWATLAM-----GEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVFDKRY 69
           MV+V   W  L M     GE+LHKVGNS+GW PN NYT WSSSH FYLGDWLYFVFDKRY
Sbjct: 54  MVMVCTGWLLLIMVTIGKGEELHKVGNSQGWTPNQNYTHWSSSHHFYLGDWLYFVFDKRY 113

Query: 70  YNVLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCP 129
           YNVLEVNK S+E CNEK+FIKNITRGGRDVFQLTEL PYFFI GGGYCFQGMKLAV +  
Sbjct: 114 YNVLEVNKRSFEDCNEKDFIKNITRGGRDVFQLTELHPYFFIGGGGYCFQGMKLAVYMST 173

Query: 130 TA-VAPAAPPSATPISGASL--SNPT--CWIMNALMLFVALF 161
               APA  P+ +  SG +   +NPT  C I+NAL+LFVA+F
Sbjct: 174 VDHSAPAPSPAGSNKSGGAFLSNNPTLCCSILNALLLFVAIF 215

[Close]

BLAST of Csor.00g074270 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-31
Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 8   VIMVIVAMAWATLAMGEKLHKVGNSK-GWNPNLNYTLWSSSHRFYLGDWLYFVFDKRYYN 67
           ++ V V +    + +   LH+VG  +  WN ++N++ W++  RFY GDWLYF F++  +N
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 68  VLEVNKTSYESCNEKEFIKNITRGGRDVFQLTELRPYFFIAGGGYCFQGMKLAVLVCPTA 127
           +L+VNK+SYE C + ++I NITRGGRDVFQL E +PY+FI G GYC +GMKLA+ V P  
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLP-- 128

Query: 128 VAPAAPPSATPISGASLSNP 147
                PP + P +  S + P
Sbjct: 129 ----QPPPSAPTNFTSTTTP 142

[Close]

BLAST of Csor.00g074270 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-27
Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 60
           M  + V V   ++A   A   +  K   VG++K WNPN+NYT+W+    FYL DWLYFV+
Sbjct: 1   MARVAVLVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVY 60

Query: 61  DKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAG-GGYCFQGMKL 120
           ++  YNV+EVN+T+Y SCN    I N +RG GRD+  L   R Y+ I+G GG C+ GMKL
Sbjct: 61  ERNQYNVIEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKL 120

Query: 121 AVLVCPTAVAPAAPPSATP 138
           AVLV      P  PP+A P
Sbjct: 121 AVLV----EKPPPPPAAAP 135

[Close]

BLAST of Csor.00g074270 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 65/138 (47.10%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 5   RVRVIMVIVAMAWATLA----MGEKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYFVF 64
           R  V++  V +A+   A    +  K + VG+ K WNPN+NYTLW+    FY+GDWLYFVF
Sbjct: 3   RSMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVF 62

Query: 65  DKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMKLA 124
            +  +N+LEVNK  YE C     I+N TRG GRD+  L E R Y+ + G G C QGMKL 
Sbjct: 63  YRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLD 122

Query: 125 VLVCPTAVAPAAPPSATP 138
           VLV      P  PP  TP
Sbjct: 123 VLV----ETPPPPPPFTP 136

[Close]

BLAST of Csor.00g074270 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MEEMRVRVIMVIVAMAWATLAMG--EKLHKVGNSKGWNPNLNYTLWSSSHRFYLGDWLYF 60
           M    V +  V++A   A    G   K + VG +K WNPN+NYT+W+    FYLGDWLYF
Sbjct: 1   MARFTVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYF 60

Query: 61  VFDKRYYNVLEVNKTSYESCNEKEFIKNITRG-GRDVFQLTELRPYFFIAGGGYCFQGMK 120
           VFD+  +N+LEVNKT YE C     I+N TRG GRD+  L + + Y+ + G G C+ GMK
Sbjct: 61  VFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMK 120

Query: 121 LAVLVCPTAVAPAAPPSATPI 139
           L+V V    + P  PP + P+
Sbjct: 121 LSVKV--EKLPP--PPKSAPV 137

[Close]

BLAST of Csor.00g074270 vs. TAIR 10
Match: AT2G26720.1 (Cupredoxin superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 20  LAMGEKLHKVGNSKGWNP-NLNYTLWSSSHRFYLGDWLYFVFDKRYYNVLEVNKTSYESC 79
           +A+G  +HKVGN+KGW     +Y  W+SS  F +GD L F ++K Y++V EV    +E C
Sbjct: 22  VAVGGTVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMC 81

Query: 80  NEKEFIKNITRGGRDVFQLTELRPYFFIAG-GGYCFQGMKLAVLVCPTAVAPAAPPSATP 139
              + ++   + G D   LT+     FI G  G+C +G KL + V P ++   A P   P
Sbjct: 82  ESSKPLRRY-KTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHVLPASLGHVAVPVPGP 141

Query: 140 I-SGASLSNPT 148
           + S +S S+P+
Sbjct: 142 VRSQSSSSSPS 151

The following BLAST results are available for this feature:

BLAST of Csor.00g074270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	1.9e-25	44.68	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q9T076	1.9e-12	42.02	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]
O82081	3.5e-11	33.83	Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1	[more]
Q96316	1.3e-10	35.04	Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1	[more]
P80728	1.3e-10	34.31	Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1	[more]

BLAST of Csor.00g074270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926318.1	6.17e-116	100.00	lamin-like protein [Cucurbita moschata] >KAG6588504.1 Lamin-like protein, partia...	[more]
XP_022970103.1	6.66e-111	96.41	lamin-like protein [Cucurbita maxima]	[more]
XP_023530289.1	7.00e-110	96.34	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
KAA0053800.1	2.04e-66	72.60	lamin-like protein [Cucumis melo var. makuwa] >TYK25601.1 lamin-like protein [Cu...	[more]
XP_008443357.1	3.56e-66	72.60	PREDICTED: lamin-like protein [Cucumis melo]	[more]

BLAST of Csor.00g074270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHP8	2.99e-116	100.00	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433505 PE=4 SV=1	[more]
A0A6J1I2W1	3.22e-111	96.41	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469092 PE=4 SV=1	[more]
A0A5A7UEY9	9.88e-67	72.60	Lamin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A1S3B8J9	1.72e-66	72.60	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103486965 PE=4 SV=1	[more]
A0A0A0LF66	1.52e-65	68.52	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G824210...	[more]

BLAST of Csor.00g074270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27035.1	9.2e-31	45.00	early nodulin-like protein 20	[more]
AT3G01070.1	4.7e-27	46.76	early nodulin-like protein 16	[more]
AT4G12880.1	1.4e-26	47.10	early nodulin-like protein 19	[more]
AT5G15350.1	1.4e-26	44.68	early nodulin-like protein 17	[more]
AT2G26720.1	3.5e-14	35.88	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 35..116 e-value: 9.3E-19 score: 67.2
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 25..124 score: 29.275621
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 23..124 e-value: 1.9E-26 score: 94.4
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 25..123
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 8..159
None	No IPR available	PANTHER	PTHR33021:SF385	OS03G0758500 PROTEIN	coord: 8..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g074270.m01	Csor.00g074270.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0032259	methylation
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016740	transferase activity