Csor.00g034040 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGGTAAATTTATTTTAGTTCCAATATTATAATGGAGGATTCATCACCGTCCTCATATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAAATCTAATGCATTATACTATGTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCGTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCGTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCGTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGHAHTQPISNHEDQELTLSGRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP Homology
BLAST of Csor.00g034040 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 9.3e-16 Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 2.8e-12 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10 Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 9.6e-05 Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 4.8e-04 Identity = 32/105 (30.48%), Postives = 45/105 (42.86%), Query Frame = 0
BLAST of Csor.00g034040 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 241 bits (614), Expect = 2.33e-80 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Csor.00g034040 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 238 bits (606), Expect = 3.87e-79 Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of Csor.00g034040 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 228 bits (582), Expect = 1.90e-75 Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of Csor.00g034040 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 217 bits (552), Expect = 6.72e-71 Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0
BLAST of Csor.00g034040 vs. NCBI nr
Match: KAG6583315.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 213 bits (542), Expect = 2.25e-69 Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy TrEMBL
Match: A0A0A0LXR9 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=3 SV=1) HSP 1 Score: 112 bits (279), Expect = 3.30e-29 Identity = 68/147 (46.26%), Postives = 78/147 (53.06%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy TrEMBL
Match: A0A6J1KAS0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1) HSP 1 Score: 107 bits (267), Expect = 2.49e-27 Identity = 63/145 (43.45%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy TrEMBL
Match: A0A6J1G964 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 107 bits (266), Expect = 3.73e-27 Identity = 60/130 (46.15%), Postives = 73/130 (56.15%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1) HSP 1 Score: 102 bits (253), Expect = 9.82e-26 Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0
BLAST of Csor.00g034040 vs. ExPASy TrEMBL
Match: A0A6J1G961 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 101 bits (251), Expect = 7.29e-25 Identity = 53/112 (47.32%), Postives = 63/112 (56.25%), Query Frame = 0
BLAST of Csor.00g034040 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 84.3 bits (207), Expect = 6.6e-17 Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of Csor.00g034040 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 84.3 bits (207), Expect = 6.6e-17 Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of Csor.00g034040 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Csor.00g034040 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11 Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of Csor.00g034040 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06 Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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