Carg05407 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05407
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStress response protein nst1
LocationCarg_Chr19: 933196 .. 934028 (+)
RNA-Seq ExpressionCarg05407
SyntenyCarg05407
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACGTGTGTCATCACATGGCGCCAGACATCGTCTCCTTCCATTTTCTGACATGTGGCTCGTACCATGGTCGAACATGCAACCTGTCTTGCTAATCAATTCATGCAAATTTTTATCTAATTTAAGAGTGAGTATTAATGAAAAGCCAAAAATAAAAACCATAAAATTAAGAAATATATTAAATAAATGGAAACTAATTAAATTCTAAACATTTCAACTAAATCTTATCCCAACCATCCTTACAATTTATTTATTTATTTATTATTATTTTGAAATAACAAACTTTTAATTTAATAAATTAAACATTATATTTTATAAATAGTTATATTATTTCATTTTAAATTCTTTTTAATGAAGGGTTGCTCCTTTTCATGAACAGCCATGGTACTTTGTTAGTTTCTTTTCGAACCCTATAAATGCTCATTTTTTTTTTCCATTTTTTTTTACCTTTTCGATCCTCGATCTCCGACATATTCAACCGTTCACTCGACTGCATCGGGAGACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA

mRNA sequence

ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA

Coding sequence (CDS)

ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA

Protein sequence

MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN
Homology
BLAST of Carg05407 vs. NCBI nr
Match: KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM 60
           MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM
Sbjct: 1   MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM 60

Query: 61  GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 112
           GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN
Sbjct: 61  GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111

BLAST of Carg05407 vs. NCBI nr
Match: XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
           M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1   MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

BLAST of Carg05407 vs. NCBI nr
Match: XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-14
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
           M + SV GMGSVL+MLVVVG +LFLPLVIGS+QPPSGL+LLIFPVTLAAVFF LSRASS+
Sbjct: 1   MEKTSVFGMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRASSH 60

BLAST of Carg05407 vs. NCBI nr
Match: XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-13
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
           M E  V GMGSVLIMLVVVG +L LPLVIGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1   MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

BLAST of Carg05407 vs. NCBI nr
Match: KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 6.6e-11
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLS 107
           M E  V GMGSVLIMLVVVG +L LPLVIGS+QPPSG +LL+FPVTLAAVFF+LS
Sbjct: 1   MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55

BLAST of Carg05407 vs. ExPASy TrEMBL
Match: A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
           M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1   MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

BLAST of Carg05407 vs. ExPASy TrEMBL
Match: A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
           M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1   MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

BLAST of Carg05407 vs. ExPASy TrEMBL
Match: A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.1e-07
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 54  ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASS 111
           +N VCG+ SV+++LVV   +LFLPL +G VQPPS   LLIFP+ L  VF LLSRASS
Sbjct: 35  DNGVCGVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91

BLAST of Carg05407 vs. ExPASy TrEMBL
Match: A0A2P5C9B1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.5e-05
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 54  ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASS 111
           +  VCG+ SV+ +LVV   +LFLPL +G VQPPS   LLI P+ L  VF LLSRASS
Sbjct: 35  DGGVCGVVSVVTILVVAALLLFLPLGMGPVQPPSAFTLLIVPLVLLVVFILLSRASS 91

BLAST of Carg05407 vs. ExPASy TrEMBL
Match: A0A2J6MK22 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.9e-05
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 59  GMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRAS 110
           G+GSV+ ML VVGC+LFLPLV+G V PPS  +LLI PV LAAV   L  AS
Sbjct: 9   GVGSVVAMLFVVGCLLFLPLVMGPVAPPSFPVLLIIPVVLAAVLIFLIHAS 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7011309.15.5e-50100.00hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008447644.14.9e-1480.00PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str... [more]
XP_038888108.14.9e-1481.67uncharacterized protein LOC120078008 [Benincasa hispida][more]
XP_011652820.13.2e-1378.33uncharacterized protein LOC105435116 [Cucumis sativus][more]
KAE8650841.16.6e-1178.18hypothetical protein Csa_017605, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T8Q72.4e-1480.00Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BHY22.4e-1480.00uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=... [more]
A0A2P5EXP08.1e-0761.40Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV... [more]
A0A2P5C9B14.5e-0557.89Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE... [more]
A0A2J6MK229.9e-0564.71Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05407-RACarg05407-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane