Carg11482 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTCGCACTCCCTCTACCTCTCCTCTTCCTCCCTATTTCTCCACAAACTTCCCTCTCACAAACCAATCTCTCTATCCCCGTCGCTCATTCCCTTCAATTCAAAACCTCTCAGCGTCTTCAATGGCGCCCATCTTCCCACCATTAACAAAACCCCATTTCAAAACCCAACCAATCCTTCAAAGCCTCTAAGAAACCCCCATTTTCTCTTCGCAAAAACCTCCCCATTTCACCAATTGGTGAAATCCCATCTCCCTTTTGCTCTTACTCAGCTCCTTCTCTCCCCTCTCCCTAGCCTCGCCTTGGAAACCGACCAAGCTTCTTCCGATAAGATAAACTTGGAGTCCATTTTAGTTTCGATTGATGACTTTTTCAACCGATACCCATTTTTTGTTGCTGGGTGTACCTTCATTTGGCTTGTTGGGATACCCTTGATTGACTACTATTTTCTAAGGAAGTACAAGTTCATTTCTGCCATTGATGCGTTTCGCAGAATTCGGGATGACCCAAATGCACAGCTCTTGGATATTAGAGATGAAAAGAGCTTGGCGTTTTTAGGGTCTCCCAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGTGTATTCAGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAGAAGGGCTTTGGAGATGGTGCTGATACTCTTGTATTTGTCCTGGACAAGTAAGTTGTTTCCATTTACTTCAAATGAAAATGGATTTGTGTGATCTTCATACTTTTATTTTAGTTTTTTGCACGCTGGAGGCAGTGGGGAAGATGGAGAGGGATGAGCGAGGGAGGCCAAGAGAGGAAACATGGGAGAGAGGAAGATTGAGAGAGGGAAAATGTAACAGCCCAAACCCACCGCTAGCAGATATTGTTCGCTTTGACCCATTACTCATTTGCCTCACAGTTTTAAAACATGTATGCTTGGGAGAGGTTTCCACACCTTTATAAACAATGCTTCGTTTTCCTCTCCAACTGATGTGAGATCTCACAATGTGGAAACTTCTCCCTAGTAGATGCATTTTAAAATCGTGAGGGTGATGATAATACGTAACGGGCCAAAGCAGACAATATCTGCTAGAGGTAGATAGCAGATTTAGGCTGTTTCAGAATGAATGAGAGGAATATGGTGTACTCCATAAATGTGCAAACTTCAATAGCGAACACTGTTGTAGTTATCATGGCCTGAGTCATGTCTTATGGTTTTCCTATTTAGCTAATGTGGCCTAAAACCAAACGGAAGGCCCCGAATTTTGCTGTTTCAAACTTTGCTGTCTTGCCAATTATATGAGTTCAATTCATAACGTGCTACGCTTTTAATGTCTAAGGTAGTTTTGATGGTAACTCCATGAAAGTGGCCGAGTTATTGTTCAAGAATGGCTTCAAGGAGGCTTATGCAATCAAGGATGGTGTTAGGGGCGAAAAAGGGTGGATGGTATGTGTCCTCCTTTTGCTAATCTACTTGATGAATATGTTTTAGTTGAAGGCTTAATCAGATACGTTGTAATGTTTATTTTGATTTGTTTTCTTGCCTCCTTTTTGGGGGCTCTTTCTTCTGGTGGCCCCTTAGTTTTGGTATTCTTTCATTTTTTTTCTCAATGAAGTTGGGTTATTCATTGAAAAAAAAAAGAGTAACGAAAAGTGGGGAAAAATAGCTAAACATCGAAAGCCAAGGTCATCCTCGGTCCTCGTCCTCTTCTAAATCAATGTACCATCTAAAGATTCTCCTTCGACATTCGACTCATGATTTCCAATATTCCAATGTTTGATCTCTTCCATCTCTGCCTTGCTCGTGTCCATTTCCTATTAACCACAATCATCATCGTGTTACTTTTCTCTTATAGGTGGTGAAGTCGAGTGGTTTTCCTAACTCGAAAACTTAGAGGCAACAGTGGTTGACGTTCCTCTAGACACGGTTGGTAGAGCTTGCTTTATGCTTCTCTAGTACCACTAGCATAGGCTACATCCTACAATCACCTATTGTCAAAATCCAACTCATCTTCTCTTGGTCATTTTCTTCCTCCATCATTCAAACCAACCATTATTTATGCTTAGAATATGATCCAAAGGTATTGGGTCAAGTCGATTTCTTTATATCAAGGTGTTGTATAAGGAGATACAAGACTCTGCCCATCTATCCACTCTTGGTTGATTGTGCAAGTATATTGAATCTTGTTAAATGACTAATCAACCTAAAAGCTTGAGTTGATGGATTAAGGTAAATTTGATTATATCATTTGTGGATGCACTATTAATTGGAACGGAAATGACTTTGAAGGGTTTAGAATACAAGACCTCTTGCTTTGATCCAATGTTAATTCAGGTTGGCAAGATAGGCAATGGTTCGTTAACCGTCACACCCTTTTATCTTGGCTTCTCAATTCCTAATTGATTTCCATTTTTGTTTGGCCTACGAGAGTTCCAACCTGTTTCCCCACAAGCCATACGATCACTTATTCTTGTTCTGTGACCTGTAGATCTAAATTATTCAAGAACCCCTAAGACGATAAGAATTCATCCCAAGGAACTTTTCAAATCGACCAAAGTTTTTTCCATTTTGAAAGTGTATAAAACTTAATCAACCAACGTTAACTATTTGATTCGAGTTAGTACAGCAGTTTTTTTCAGAGTTTTCATTCTCACTCTTAATTTCTCTGTTCAGATTCCATACCTACTACCTGTGTTGACAGTAGGGTGAAAAGGTTCTTTAGTTTCTTTTCTTTCCAAATCATGACTTGGTGGAAGTTAGAAAGTAGAGGTTAGACTCTATTCTAATTTAGGTAAAGCTTTCTGTTACTTATTTTCATCCTCCTCTTTGCAGGCAATACAGGAGTCCTTGTTACCGCCTTCTGTTCACATTAGCAGAAGAAAAAAGGCTAAAGCTTCCAAAAAGTTTGGGACTAATGGAGTTGTTCAACAAAGTGGAGACAAAGAGGCTGTTCCATCTTTGAAATCCTCCAATGGAGAAATCCAAACTTCACCCCTCCATGTCAATGCATCGTCAGACACCGAGTCCAAGTTGAAAACTCGGTCAAGGTCATCGTCTCCTTATCCAAACGTAAGTTCACTCTGTCAACTAGTACATCTTTAAGTATGAACTGATTTTTCACTCTTTATAAGTAGAGAAAAAGAAGGTCTAAGCTCAATTAAAATACAAAAGCACATTGTAATTTTTGTATGTTAGATTATCTAGTCCAATATGCTTCTAAGCAATATAAAAACAATCAAAAGCCTTTGAAATGCCTCAAAGGAAACCATTTAATTAGTGGTTTTCCTTAAACTGCTTGTATCAAGTGTTTCATCTAAAAACACTAGCTTCAAAAATGTCTGAAAGTCACTCAATTAATAGAAAATGCATGTTTCGTTATATATTGGAGACTCTCTTTTATGTAGAATGTTCTTCCTGTCATGATCTAGTGTTTGTATTTACTTTGATTGTGGATTTACTGTGCATGTGATTTACAGACTGACTCCATTTTCTATAACACATATATGACAGTACCCAGATTTGAAACCACCATCTTCTCCAACTCCCTCAAAGCCAAGGACATGAAAGACTTACAAGTTTTGAGCTGATCATCTTGTTCTGCATAGAGAAGTCGACTACAATACTATCAAGCGGCTGCTGCTATTGTTTCCATGTGGTTGTTGTAGACTCCAATTTTTTGGCAACTAGCTGTATATAATACATAATTTAGTCTTTTTGCTCCTTATACAGTTGGTGCAATTCAAGATTTAAGCAAATGAAGGCACTTCGACATTCCTCAATGAATAATTACATGAAAATGGGGTGATATTTATACATGAAGCACAAGGCCTAGCGACTTAAGAATAAACGAAAATAATACTTGATCATTTGCAAGTATAGCATGAGGAGCTTCTGGAT ATGGAGTCGCACTCCCTCTACCTCTCCTCTTCCTCCCTATTTCTCCACAAACTTCCCTCTCACAAACCAATCTCTCTATCCCCGTCGCTCATTCCCTTCAATTCAAAACCTCTCAGCGTCTTCAATGGCGCCCATCTTCCCACCATTAACAAAACCCCATTTCAAAACCCAACCAATCCTTCAAAGCCTCTAAGAAACCCCCATTTTCTCTTCGCAAAAACCTCCCCATTTCACCAATTGGTGAAATCCCATCTCCCTTTTGCTCTTACTCAGCTCCTTCTCTCCCCTCTCCCTAGCCTCGCCTTGGAAACCGACCAAGCTTCTTCCGATAAGATAAACTTGGAGTCCATTTTAGTTTCGATTGATGACTTTTTCAACCGATACCCATTTTTTGTTGCTGGGTGTACCTTCATTTGGCTTGTTGGGATACCCTTGATTGACTACTATTTTCTAAGGAAGTACAAGTTCATTTCTGCCATTGATGCGTTTCGCAGAATTCGGGATGACCCAAATGCACAGCTCTTGGATATTAGAGATGAAAAGAGCTTGGCGTTTTTAGGGTCTCCCAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGTGTATTCAGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAGAAGGGCTTTGGAGATGGTGCTGATACTCTTGTATTTGTCCTGGACAATTTTGATGGTAACTCCATGAAAGTGGCCGAGTTATTGTTCAAGAATGGCTTCAAGGAGGCTTATGCAATCAAGGATGGTGTTAGGGGCGAAAAAGGGTGGATGGCAATACAGGAGTCCTTGTTACCGCCTTCTGTTCACATTAGCAGAAGAAAAAAGGCTAAAGCTTCCAAAAAGTTTGGGACTAATGGAGTTGTTCAACAAAGTGGAGACAAAGAGGCTGTTCCATCTTTGAAATCCTCCAATGGAGAAATCCAAACTTCACCCCTCCATGTCAATGCATCGTCAGACACCGAGTCCAAGTTGAAAACTCGGTCAAGGTCATCGTCTCCTTATCCAAACTACCCAGATTTGAAACCACCATCTTCTCCAACTCCCTCAAAGCCAAGGACATGAAAGACTTACAAGTTTTGAGCTGATCATCTTGTTCTGCATAGAGAAGTCGACTACAATACTATCAAGCGGCTGCTGCTATTGTTTCCATGTGGTTGTTGTAGACTCCAATTTTTTGGCAACTAGCTGTATATAATACATAATTTAGTCTTTTTGCTCCTTATACAGTTGGTGCAATTCAAGATTTAAGCAAATGAAGGCACTTCGACATTCCTCAATGAATAATTACATGAAAATGGGGTGATATTTATACATGAAGCACAAGGCCTAGCGACTTAAGAATAAACGAAAATAATACTTGATCATTTGCAAGTATAGCATGAGGAGCTTCTGGAT ATGGAGTCGCACTCCCTCTACCTCTCCTCTTCCTCCCTATTTCTCCACAAACTTCCCTCTCACAAACCAATCTCTCTATCCCCGTCGCTCATTCCCTTCAATTCAAAACCTCTCAGCGTCTTCAATGGCGCCCATCTTCCCACCATTAACAAAACCCCATTTCAAAACCCAACCAATCCTTCAAAGCCTCTAAGAAACCCCCATTTTCTCTTCGCAAAAACCTCCCCATTTCACCAATTGGTGAAATCCCATCTCCCTTTTGCTCTTACTCAGCTCCTTCTCTCCCCTCTCCCTAGCCTCGCCTTGGAAACCGACCAAGCTTCTTCCGATAAGATAAACTTGGAGTCCATTTTAGTTTCGATTGATGACTTTTTCAACCGATACCCATTTTTTGTTGCTGGGTGTACCTTCATTTGGCTTGTTGGGATACCCTTGATTGACTACTATTTTCTAAGGAAGTACAAGTTCATTTCTGCCATTGATGCGTTTCGCAGAATTCGGGATGACCCAAATGCACAGCTCTTGGATATTAGAGATGAAAAGAGCTTGGCGTTTTTAGGGTCTCCCAATTTGAGGATTTTGAATAAGGATGTGGTGCAGGTTGTGTATTCAGAGGAGGATGAAGATGGGTTTGTGAAGAAGGTGAAGAAGGGCTTTGGAGATGGTGCTGATACTCTTGTATTTGTCCTGGACAATTTTGATGGTAACTCCATGAAAGTGGCCGAGTTATTGTTCAAGAATGGCTTCAAGGAGGCTTATGCAATCAAGGATGGTGTTAGGGGCGAAAAAGGGTGGATGGCAATACAGGAGTCCTTGTTACCGCCTTCTGTTCACATTAGCAGAAGAAAAAAGGCTAAAGCTTCCAAAAAGTTTGGGACTAATGGAGTTGTTCAACAAAGTGGAGACAAAGAGGCTGTTCCATCTTTGAAATCCTCCAATGGAGAAATCCAAACTTCACCCCTCCATGTCAATGCATCGTCAGACACCGAGTCCAAGTTGAAAACTCGGTCAAGGTCATCGTCTCCTTATCCAAACTACCCAGATTTGAAACCACCATCTTCTCCAACTCCCTCAAAGCCAAGGACATGA MESHSLYLSSSSLFLHKLPSHKPISLSPSLIPFNSKPLSVFNGAHLPTINKTPFQNPTNPSKPLRNPHFLFAKTSPFHQLVKSHLPFALTQLLLSPLPSLALETDQASSDKINLESILVSIDDFFNRYPFFVAGCTFIWLVGIPLIDYYFLRKYKFISAIDAFRRIRDDPNAQLLDIRDEKSLAFLGSPNLRILNKDVVQVVYSEEDEDGFVKKVKKGFGDGADTLVFVLDNFDGNSMKVAELLFKNGFKEAYAIKDGVRGEKGWMAIQESLLPPSVHISRRKKAKASKKFGTNGVVQQSGDKEAVPSLKSSNGEIQTSPLHVNASSDTESKLKTRSRSSSPYPNYPDLKPPSSPTPSKPRT Homology
BLAST of Carg11482 vs. NCBI nr
Match: KAG7014541.1 (Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 704.9 bits (1818), Expect = 3.6e-199 Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
BLAST of Carg11482 vs. NCBI nr
Match: KAG6576020.1 (Rhodanese-like domain-containing protein 4A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 699.1 bits (1803), Expect = 2.0e-197 Identity = 361/365 (98.90%), Postives = 362/365 (99.18%), Query Frame = 0
BLAST of Carg11482 vs. NCBI nr
Match: XP_022954032.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita moschata]) HSP 1 Score: 698.0 bits (1800), Expect = 4.4e-197 Identity = 359/362 (99.17%), Postives = 360/362 (99.45%), Query Frame = 0
BLAST of Carg11482 vs. NCBI nr
Match: XP_022991517.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita maxima]) HSP 1 Score: 689.5 bits (1778), Expect = 1.6e-194 Identity = 354/362 (97.79%), Postives = 357/362 (98.62%), Query Frame = 0
BLAST of Carg11482 vs. NCBI nr
Match: XP_023548602.1 (rhodanese-like domain-containing protein 4A, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 679.5 bits (1752), Expect = 1.6e-191 Identity = 351/362 (96.96%), Postives = 357/362 (98.62%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy Swiss-Prot
Match: Q56XR7 (Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR4A PE=2 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.3e-63 Identity = 136/248 (54.84%), Postives = 176/248 (70.97%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy Swiss-Prot
Match: Q9M158 (Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STR4 PE=1 SV=2) HSP 1 Score: 117.1 bits (292), Expect = 4.2e-25 Identity = 81/225 (36.00%), Postives = 118/225 (52.44%), Query Frame = 0
HSP 2 Score: 42.0 bits (97), Expect = 1.7e-02 Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy Swiss-Prot
Match: Q6ETQ7 (Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TROL PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.6e-22 Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 0
HSP 2 Score: 37.0 bits (84), Expect = 5.5e-01 Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy Swiss-Prot
Match: A2X345 (Protein THYLAKOID RHODANESE-LIKE, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=TROL PE=3 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 3.7e-21 Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0
HSP 2 Score: 37.0 bits (84), Expect = 5.5e-01 Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy TrEMBL
Match: A0A6J1GPW4 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456414 PE=4 SV=1) HSP 1 Score: 698.0 bits (1800), Expect = 2.1e-197 Identity = 359/362 (99.17%), Postives = 360/362 (99.45%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy TrEMBL
Match: A0A6J1JM16 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488109 PE=4 SV=1) HSP 1 Score: 689.5 bits (1778), Expect = 7.5e-195 Identity = 354/362 (97.79%), Postives = 357/362 (98.62%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy TrEMBL
Match: A0A5D3B9W6 (Rhodanese-like domain-containing protein 4A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00060 PE=4 SV=1) HSP 1 Score: 558.5 bits (1438), Expect = 2.0e-155 Identity = 301/368 (81.79%), Postives = 320/368 (86.96%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy TrEMBL
Match: A0A1S3C7N8 (rhodanese-like domain-containing protein 4A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497630 PE=4 SV=1) HSP 1 Score: 558.5 bits (1438), Expect = 2.0e-155 Identity = 301/368 (81.79%), Postives = 320/368 (86.96%), Query Frame = 0
BLAST of Carg11482 vs. ExPASy TrEMBL
Match: A0A0A0K8H6 (Rhodanese domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G368730 PE=4 SV=1) HSP 1 Score: 549.7 bits (1415), Expect = 9.3e-153 Identity = 297/368 (80.71%), Postives = 319/368 (86.68%), Query Frame = 0
BLAST of Carg11482 vs. TAIR 10
Match: AT3G25480.1 (Rhodanese/Cell cycle control phosphatase superfamily protein ) HSP 1 Score: 244.2 bits (622), Expect = 1.6e-64 Identity = 136/248 (54.84%), Postives = 176/248 (70.97%), Query Frame = 0
BLAST of Carg11482 vs. TAIR 10
Match: AT4G01050.1 (thylakoid rhodanese-like ) HSP 1 Score: 117.1 bits (292), Expect = 3.0e-26 Identity = 81/225 (36.00%), Postives = 118/225 (52.44%), Query Frame = 0
HSP 2 Score: 42.0 bits (97), Expect = 1.2e-03 Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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