Carg09610 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09610
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 7068807 .. 7071331 (+)
RNA-Seq ExpressionCarg09610
SyntenyCarg09610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGATTGTGAGCATTCTAAGTCGTGAGTCTGACAGTTTTAGTCGCCGTCGCCGTCGCCATCGCCGTCGCCATCGTGGGTGCATCACACCGTACACCAACACAGGTGCAGAAGCGAGAGAAAGAAAATTAGGGTTTCAATTGATGTACTTCATATTTAGAATCTTCCATATTTCAACTTAATCAACCGCCGATAGGACCTTTCTTGTTAGTATGATTAGTCATATCCCCCTACTCAAGGTTATATACCGTGAGCCGCTTTTGTTACTCTCTTGCTTGCTTATATAACGTCTCTCTTAATAATCTCCTTTTCAAAAGTCTCTCTGCCCTCGTTTTCTAAAACCTTCTTCTTAAACCGAGGCCAGAGGCTCGAGCATACGTCGCTTGGCCGTAGGCGGTAAGAACAAATTGGCTTAGCTCATTTGTCGTTGGAAAGTGAGTGCCGCATAATCGTAAGTCCGCTGTCATCAAGAGTGCGATAACTGCCGATAAGACCTTTCTTCTTAGTATGATTCAATTGACATAAAAACACGAAGAAAATGAAAAAAATTAAATACAATGAAGGTCATGTGATTTAGAGGTTAGTACTTTAGATTTTAAATTTAAGTGATTTATTTGTCGAGTCATACCGATAAGTGGCTAGCACTCTAGACTTAGACTCGGGTTTTGACTCGTGGGTCCTCTCTCCCTCCTTACCTAATTTTGAATTTAGCTTTAAAATTTAATATTAATTTGTCGAGCATATATCTATAGATATAAAACATGGTTACCATGTAAAAATTTAAATGAAACAAGTAGTTCTAACGTGTAGTAGTTAGCACTCTCGACTTTGAATTTAGTGACCTAGGTTCGCAACCACTCTGACTTAGAGACTTAGATGGATTTGGACTACTCTCTTTGAATGCCATTGACATAAAACATGGCTAGCATACAAAAACCTAAATGATCAATTGGTTCTATGGTGTAGTGGTTAGCACTCTAGACTCTGAATCTAGTGACCTGAGTTCAACTCTCGGTAGAACCTTCCTCCCTAAATCCAGCAAACTGGGTTCGACTCCTGGTAGGAACAAATAGGTTTTAAAATGAATTAATTAATATATAAATAAAATTTAATGGGATAATGAGGGATGTGAAAAGAAAGGGATAAAAAAGGGACAGCAGAATCCATGCATGGATAACTAGCTTCATTTTCATTCCTCTAAGCAACCTAGGGCTAGAATTGACATTTGATTTGATTTTATCCCCATAATTCCCTCTCTTTTTTTCTTTTTTTTTTTTAATTTTTATTTTTAAATATTCATTCATTTCCTTTTCTTCAATCCTTATTGTTAATAAAAAAAATATTTTTAAAAGTTTCATTTAAAAATCTCATAAATATTTATTTTTAAAATAATTTCCCAAGTATAAAAAATATTCCAAATATACCCTTTAAAAAGACTTGAAATATTTTGAGATAATGTCTAAAATGTCTGTCAATTTTTGTCCATATTATTAATTGTACTATTTATTTATTATTTTTTTTTTATAAAGGGTGAGGGTGGTAATGTTATTTTAAATTCTTAATGGGTAATTTGTAAAGATACTTTTTAAACTTTTTTTAATATATATATAATATATATATATATAATATATATATATATATATATATATATATTTAATGAGTTTTAAAGTTGAAAACAGTATTTATTACGCTTTTAATTTTTTTAAAAAAATTAAGAGTAATTATGTGAAACTTTTGAGTGTATTTTTGAGACAAAATATAAAATTTGTACGTACGTTTATTAATTTAGTCTAAAATTATGTACACGAAATTTACATGTAAATGTTATCCTAAATAATTTTGTATATACATTAGTTGTTGGGATTTTTTTCATTTTTTTTAAAATAATTTAAAATTTCAAGAATAAAAAAATTTAAAGTCTAGAAGTTATTTTATTTATATTTATATTTTTATATTTGGTAAAATATCGAATTGAAAATAAAAGAAAGTGACATCCGGGCTACTCACAACACATTTAAATGGGCCGACATGACTGGTTTTAGGCCCAACTTGACCCAACAGATAACTCGGCCCATCTTTGGCTAAAAAACACATTTTAAAATTTAACTATGAAAATTTAAAATTTTTATTTTAAAATGATTTGATCGGAGGGATATAAAAGGAAGATCGTGGGATTAACGGTGGTGCCCTCAAAGCCTGGTGGTTTCTATTTCTTGGAAGAATGATCCATTATATATTTCTTCGCTGATTTGCTCTCTAAATTGTTCTTCCAATTTGAAGGAATCGTGAAGGAAAAGGTGAACATGGAGAGAATTCCCATATTTGCCGGAAGAATGCTGGGAAAATGATCTTCAGTTTCCTCCTCCAACGTCGCACAGCCACCATTTCGAACCCTATCTCTGGTCTGCAAACAATTCTTATCATCACCAACACGCTTCGCACTACCCCTCAGAATCTCCGAATTAACTATTCCGGCGATGTCCCGGATATTCTCCAGATTCCGGCAACTCAAACGGATTGA

mRNA sequence

ATGGTGATGATTGTGAGCATTCTAAGTCGTGAGTCTGACAGTTTTAGTCGCCGTCGCCGTCGCCATCGCCGTCGCCATCGTGGGTGCATCACACCGTACACCAACACAGTGGTTAGCACTCTAGACTCTGAATCTAGTGACCTGAGTTCAACTCTCGGTAGAACCTTCCTCCCTAAATCCAGCAAACTGGGTTCGACTCCTGGAAAAGGTGAACATGGAGAGAATTCCCATATTTGCCGGAAGAATGCTGGGAAAATGATCTTCAGTTTCCTCCTCCAACGTCGCACAGCCACCATTTCGAACCCTATCTCTGGTCTGCAAACAATTCTTATCATCACCAACACGCTTCGCACTACCCCTCAGAATCTCCGAATTAACTATTCCGGCGATGTCCCGGATATTCTCCAGATTCCGGCAACTCAAACGGATTGA

Coding sequence (CDS)

ATGGTGATGATTGTGAGCATTCTAAGTCGTGAGTCTGACAGTTTTAGTCGCCGTCGCCGTCGCCATCGCCGTCGCCATCGTGGGTGCATCACACCGTACACCAACACAGTGGTTAGCACTCTAGACTCTGAATCTAGTGACCTGAGTTCAACTCTCGGTAGAACCTTCCTCCCTAAATCCAGCAAACTGGGTTCGACTCCTGGAAAAGGTGAACATGGAGAGAATTCCCATATTTGCCGGAAGAATGCTGGGAAAATGATCTTCAGTTTCCTCCTCCAACGTCGCACAGCCACCATTTCGAACCCTATCTCTGGTCTGCAAACAATTCTTATCATCACCAACACGCTTCGCACTACCCCTCAGAATCTCCGAATTAACTATTCCGGCGATGTCCCGGATATTCTCCAGATTCCGGCAACTCAAACGGATTGA

Protein sequence

MVMIVSILSRESDSFSRRRRRHRRRHRGCITPYTNTVVSTLDSESSDLSSTLGRTFLPKSSKLGSTPGKGEHGENSHICRKNAGKMIFSFLLQRRTATISNPISGLQTILIITNTLRTTPQNLRINYSGDVPDILQIPATQTD
Homology
[Close]
BLAST of Carg09610 vs. NCBI nr
Match: KAG7014162.1 (hypothetical protein SDJN02_24336, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MVMIVSILSRESDSFSRRRRRHRRRHRGCITPYTNTVVSTLDSESSDLSSTLGRTFLPKS 60
           MVMIVSILSRESDSFSRRRRRHRRRHRGCITPYTNTVVSTLDSESSDLSSTLGRTFLPKS
Sbjct: 1   MVMIVSILSRESDSFSRRRRRHRRRHRGCITPYTNTVVSTLDSESSDLSSTLGRTFLPKS 60

Query: 61  SKLGSTPGKGEHGENSHICRKNAGKMIFSFLLQRRTATISNPISGLQTILIITNTLRTTP 120
           SKLGSTPGKGEHGENSHICRKNAGKMIFSFLLQRRTATISNPISGLQTILIITNTLRTTP
Sbjct: 61  SKLGSTPGKGEHGENSHICRKNAGKMIFSFLLQRRTATISNPISGLQTILIITNTLRTTP 120

Query: 121 QNLRINYSGDVPDILQIPATQTD 144
           QNLRINYSGDVPDILQIPATQTD
Sbjct: 121 QNLRINYSGDVPDILQIPATQTD 143

The following BLAST results are available for this feature:
BLAST of Carg09610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014162.12.5e-71100.00hypothetical protein SDJN02_24336, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09610 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09610-RACarg09610-RAmRNA