Carg23220 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23220
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 8657968 .. 8658252 (-)
RNA-Seq ExpressionCarg23220
SyntenyCarg23220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTCTGTAAGTGGTATGAAATTGCACTGATTGCCTTATGTTATTTAACATCTCAAGTACCATGCTTGACTGAAGAAATTGAGTGCACACAGACAATATCGACAACAGGGTACCGTTGGATGAACGTTCCTGAACGTGTGCCTTCGTTGGAGGATGAACAACAAGCAATTGTCAAATGGGATTTTCGGTATATGATGCCTTTTACAAAAGGAAAAATCTTAACTTCTCTTTCATTTTCTATTTGTTATCTGTTATTTCCTTCCTCATTTAGACGCCTCTAA

mRNA sequence

ATGGCACTCTGTAAGTGGTATGAAATTGCACTGATTGCCTTATGTTATTTAACATCTCAAGTACCATGCTTGACTGAAGAAATTGAGTGCACACAGACAATATCGACAACAGGGTACCGTTGGATGAACGTTCCTGAACGTGTGCCTTCGTTGGAGGATGAACAACAAGCAATTGTCAAATGGGATTTTCGACGCCTCTAA

Coding sequence (CDS)

ATGGCACTCTGTAAGTGGTATGAAATTGCACTGATTGCCTTATGTTATTTAACATCTCAAGTACCATGCTTGACTGAAGAAATTGAGTGCACACAGACAATATCGACAACAGGGTACCGTTGGATGAACGTTCCTGAACGTGTGCCTTCGTTGGAGGATGAACAACAAGCAATTGTCAAATGGGATTTTCGACGCCTCTAA

Protein sequence

MALCKWYEIALIALCYLTSQVPCLTEEIECTQTISTTGYRWMNVPERVPSLEDEQQAIVKWDFRRL
Homology
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BLAST of Carg23220 vs. NCBI nr
Match: KAG7015667.1 (hypothetical protein SDJN02_23304, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MALCKWYEIALIALCYLTSQVPCLTEEIECTQTISTTGYRWMNVPERVPSLEDEQQAIVK 60
          MALCKWYEIALIALCYLTSQVPCLTEEIECTQTISTTGYRWMNVPERVPSLEDEQQAIVK
Sbjct: 1  MALCKWYEIALIALCYLTSQVPCLTEEIECTQTISTTGYRWMNVPERVPSLEDEQQAIVK 60

Query: 61 WDFRRL 67
          WDFRRL
Sbjct: 61 WDFRRL 66

The following BLAST results are available for this feature:
BLAST of Carg23220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015667.13.8e-30100.00hypothetical protein SDJN02_23304, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg23220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23220 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23220-RACarg23220-RAmRNA