Carg05739 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTGTGCATGTTTAACAGTTGCGCCTTGTAATTCACAGGCAGAACTTTTCAGTTAAAAACTATTTTTATATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTACTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTTATCATATGTACTATTACTATGACCAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC ATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP Homology
BLAST of Carg05739 vs. NCBI nr
Match: XP_014494508.1 (small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. NCBI nr
Match: XP_030543269.1 (small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea] >XP_030543270.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea] >XP_030543271.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. NCBI nr
Match: XP_003630987.1 (small nuclear ribonucleoprotein Sm D2 [Medicago truncatula] >XP_004503332.1 small nuclear ribonucleoprotein Sm D2-like [Cicer arietinum] >XP_004503333.1 small nuclear ribonucleoprotein Sm D2-like [Cicer arietinum] >AET05463.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK41261.1 unknown [Medicago truncatula] >RHN43829.1 putative small nuclear ribonucleoprotein Sm D2 [Medicago truncatula]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. NCBI nr
Match: KAF3952231.1 (hypothetical protein CMV_022197 [Castanea mollissima]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. NCBI nr
Match: XP_020538459.1 (small nuclear ribonucleoprotein Sm D2 isoform X4 [Jatropha curcas]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 4.1e-37 Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q54NC5 (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44689 GN=snrpd2 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.2e-35 Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A5N5KBI5 (Small nuclear ribonucleoprotein Sm D2 OS=Salix brachista OX=2182728 GN=DKX38_003252 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A6A4QKF7 (Small nuclear ribonucleoprotein Sm D2 OS=Lupinus albus OX=3870 GN=Lal_00016389 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A0B2Q033 (Small nuclear ribonucleoprotein Sm D2 OS=Glycine soja OX=3848 GN=D0Y65_054695 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: G7LBH6 (Small nuclear ribonucleoprotein Sm D2 OS=Medicago truncatula OX=3880 GN=11426500 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg05739 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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