Carg15051 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15051
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 2-like isoform X1
Location	Carg_Chr16: 257733 .. 261947 (-)
RNA-Seq Expression	Carg15051
Synteny	Carg15051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAATCCGAATCATTGATGTTGTCTGTCTGTTCCATGAAAGTAAAATTGTGAACTTTGCAAATAATAGAGTCCCACCGCCCCAACCCAACGGCTTCCCAAAGGGAACAACCGGGCTGACCTACCTTCAACATTCAAGGGACTCGCTGTTTCATCCTAAATTCACCGCCTTTTTGAAGGAGCATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGGTAATAAACAAACAACTCCATTGTCTACCCTCTTTTCCCGCTTGTTTCGTACATTTGGAATTAGGGTTTTCTTGTGGCCACTGAATTTGAGGTTTCCCCATATATCCCCAGTTGCTAAATTGTACTTCGATTTTAACGAACTTTGAGTGGAAGATGGGATTACTGGAAAACCGTAATATGCAGAGATTGATTCTGTTAACATGGGTTTTCTCTTAAAATCTTATCTTCATCCATTTGCTGTAGACGTGTTTGGAACTTTCCAGAATGGTTGGAAGGCGGTTCCCTGCGTGCTGTTCTACACCATCCAACCTCATCATTAAGTGCGATTTGTGCATGATTCTGTTGTCCTTCAAGATATTTTCTTGCTCTATATCTCAAAATTTTACTGATTCGCTGACCACGTTTTGTGGAACTAAGTATCTCCATAAGTCAAATTAGACAGATTTATTGGTTTTCACGAGTGTTAGGATCGTAGTGACTAGAGGGTGTCCTTAATGCGCACTTCGAAATGATCTGATATGAACCAAGAGACATCATTCATACAATATACTTTATTTCAACAATATTTTCTTCACATCTTCATTGAAGTATATTGTATGAATGATGTCTCTTGGTTCATATCATGATCTGTTCTCCTATTATTGAGTTCTTACTTGTAACATTTTGGTAAAAGGCTCAAAGAACGCCACTAAAGGAATGCGTTTTTGTCAACCATGTTTCTAGTTTCTATTCAGAGTATGATTCTTTAAGAGATTTTCCAGAAACAAACCAATTCATTAAAACAAGAAGGTAAAATGGTGGTCTACTAATGTTCATTACTGAATTCTTTGCATATTAATGTTCACATCATTCTTTATGTTCTTGACCTAGTACACTTTCATTTTTTTGAGTCATGATGTCACTGTTGATTGAAGCAACACAATTCTGTGTGACCTCCTTTGCAGACACTTTGTTTCTTTTTCTGTTCTTTATTTTGCACATAATTCGTGGTTAATGTCTTGTAGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGGTACTTGTTTCACTTTGAAGGTTCAATTCTGTTTTCTATGTGTTTTCACATTCAAGTTCATTCTATTTAACCACGCAACTTCATTTCTTTTTCCAGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCGTATCTTTTTCTAATTTTTTCCATTTTGCATTCTTGTATTGTTAAAGGCATTCTTGTATTGTGTTACATTGTCTCCCTCACATTCCCCCGTAGATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATGTAAGTTGATATGTTGAAACTCTGTTTTCATTTAATATGGGACGCCATTAACTAAAAAATGAATTTTCTTTACCTAACGTGTGCAGCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGTCACTATTGGAGAATTATGTGCCTTTAATTTATATATTTATTTTGACTCGTCTTCACGAAAAAATTATCCATTTGTCTTTCTCCTGCATAATTTGTGATGTCCTTTAGATGTCTTTACCCAAACATGGGCACATTTGTGTTTATATATCTATACAAGCTATTCTCCCAAGGTACAGATTCAGACATGTTTGGGGATGGTTTTTTATGTGTATCATATGGCTCTCTTTTCTCCATAGATGGGAATGTATTTGCATGTGTATCATAGGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTAGTTTTGTAATTGGTATCATAGATTATGCAGTCCAGCATTTCATGTTGACTTTCAGTTCTTCAGCAGATGTGAAGCGTATTACATTTAGGACCAACTAGCCATGAAGTTTTAAATTATGTTTATTAGTTTAATTGTGTGATTAACTCGATGATCTTTGACCTATACATTCGATACCCTTTCTAATGTTCACGTTAAAATTTGGACTTGGAGTCGTGATTCATACACCTCAGTTGTTGGGAAGACTAAATCATGGTCGCCAAACTCAACCGTGAGATCACATCGCCATGAGTGTAATAAGGTCCTTTGTGATATGCCCTTTTGAATTAAATAGTAAAGTTGAGTATGAAAAAATATAAAGGTGATAATTATACCATTTGTGATTCAAATCGTTTTGCCACGCCTTGTATCCGATATCTGTTCTTTTCCTATCTCGTCGTTCTACACGTAGCTGTTGCATATGTCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGTGATAAAACGCCTTCTTTGATCCACTCGACCAATTATTTTCTTTGCCACATGGTAAAGTCCAAGGAAAAGTTTATTTAAACGTTGAATCACTCTAAATCGTGGATGAATCTTGTGTAGGATTTGCGCGTACTGTGAAGTTATGAATTTGAGGCAATGTGACAGTCGGATATCAAAAACCGGAGCGTATTAGTTAGGACCGATCGAATTCGTAAACATTAATATGTGTTGGAATCTTGTGATTTGTGGCGTTATTTTATGTTTACAATCTCACTCTGTATTTATGCGTGCTGCTACGAACGTGTTGTTGAGCTGTGCTGTGGGGATAAATTTTTGCGTTGATCATTATTTTCGACTAAGTGAGAATTTCAGCTCAACAATATCCAGACATGAGTTCAGCGACGAAAAGAAGTGGGCTTACTTATAGATTACAGTTCATTGTTATTTTCCTTCATTTTTCAATTTAAAACTATGTTCCAAAGCTGTGCATTTTGTCTGAGAAGAGTTTTTCTTTACTGCAATGTGATCAGGTAGAGAATAAACTGCATTCTCGAGCTGACATGATGCATTGAGTTTGGAGACTACGGAATGCTGTAAATTGGAGTATTCATTTTTTAGATCTTTGGTGGTTTCGTGCACCATCGCTCTAGACATAGGATTCACAACACTTCTCCGCCCTAGCCCTATATTGGAAATGCTTTCCCTCTGGGCATGTATAGATGCAATTCCAATTGTGGAGTCACTACTGAAGGCCAACTGATTAGCCCTATGTTGGGTTTGTCTTTATGATTGCAAGGAGCTTTGGCAATTGCTGCTAAGACTTAAGCTTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTCTACTGGTGAGTGATTGGGTTGATTTGGGGCTCGAGAAAAATTGCAACATGATTCTGGTGTACCAGAAATAGACAATGGGAGTGTAAGTAATAGGAACGAACTTCATATCAGAGCTTGTTGTTGCTGTTGCTGCTGCTGCTGCAGCATTTATGGTGAGGAAATTTATGCACACAAAACGTGGTTGTCTGTCTCATGAAGAGGACATTTTTCTGTAACAATGGAGGAAGTCTTTGCTTCCAGCTTAGAGACAGA

mRNA sequence

AGGAAATCCGAATCATTGATGTTGTCTGTCTGTTCCATGAAAGTAAAATTGTGAACTTTGCAAATAATAGAGTCCCACCGCCCCAACCCAACGGCTTCCCAAAGGGAACAACCGGGCTGACCTACCTTCAACATTCAAGGGACTCGCTGTTTCATCCTAAATTCACCGCCTTTTTGAAGGAGCATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGATTTGCGCGTACTGTGAAGTTATGAATTTGAGGCAATGTGACAGTCGGATATCAAAAACCGGAGCGTATTAGTTAGGACCGATCGAATTCGTAAACATTAATATGTGTTGGAATCTTGTGATTTGTGGCGTTATTTTATGTTTACAATCTCACTCTGTATTTATGCGTGCTGCTACGAACGTGTTGTTGAGCTGTGCTGTGGGGATAAATTTTTGCGTTGATCATTATTTTCGACTAAGTGAGAATTTCAGCTCAACAATATCCAGACATGAGTTCAGCGACGAAAAGAAGTGGGCTTACTTATAGATTACAGTTCATTGTTATTTTCCTTCATTTTTCAATTTAAAACTATGTTCCAAAGCTGTGCATTTTGTCTGAGAAGAGTTTTTCTTTACTGCAATGTGATCAGGTAGAGAATAAACTGCATTCTCGAGCTGACATGATGCATTGAGTTTGGAGACTACGGAATGCTGTAAATTGGAGTATTCATTTTTTAGATCTTTGGTGGTTTCGTGCACCATCGCTCTAGACATAGGATTCACAACACTTCTCCGCCCTAGCCCTATATTGGAAATGCTTTCCCTCTGGGCATGTATAGATGCAATTCCAATTGTGGAGTCACTACTGAAGGCCAACTGATTAGCCCTATGTTGGGTTTGTCTTTATGATTGCAAGGAGCTTTGGCAATTGCTGCTAAGACTTAAGCTTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTCTACTGGTGAGTGATTGGGTTGATTTGGGGCTCGAGAAAAATTGCAACATGATTCTGGTGTACCAGAAATAGACAATGGGAGTGTAAGTAATAGGAACGAACTTCATATCAGAGCTTGTTGTTGCTGTTGCTGCTGCTGCTGCAGCATTTATGGTGAGGAAATTTATGCACACAAAACGTGGTTGTCTGTCTCATGAAGAGGACATTTTTCTGTAACAATGGAGGAAGTCTTTGCTTCCAGCTTAGAGACAGA

Coding sequence (CDS)

ATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGATTTGCGCGTACTGTGAAGTTATGA

Protein sequence

MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEECEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL

Homology

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BLAST of Carg15051 vs. NCBI nr
Match: KAG7014691.1 (RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 579.3 bits (1492), Expect = 1.8e-161
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEE 240
           GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEE
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEE 240

Query: 241 CEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL 290
           CEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL
Sbjct: 241 CEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL 289

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BLAST of Carg15051 vs. NCBI nr
Match: XP_022923071.1 (RNA-binding protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 454.9 bits (1169), Expect = 5.2e-124
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVL 232
           GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFV RQM L
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVCRQMSL 231

[Close]

BLAST of Carg15051 vs. NCBI nr
Match: XP_023553421.1 (RNA-binding protein 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.9 bits (1169), Expect = 5.2e-124
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRS+KISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSAKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVL 232
           GFVDFVSPAHAATAMDALQGVLAALII FFTVVFWLLNICTFVFVSRQM L
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIINFFTVVFWLLNICTFVFVSRQMSL 231

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BLAST of Carg15051 vs. NCBI nr
Match: KAG6576639.1 (RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447.6 bits (1150), Expect = 8.2e-122
Identity = 233/289 (80.62%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEE 240
           GFVDFVSPAHAATAMDALQG                                        
Sbjct: 181 GFVDFVSPAHAATAMDALQG---------------------------------------- 233

Query: 241 CEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL 290
                           CNLLAFLVQGQVVGIVESVELCDFAGFARTVKL
Sbjct: 241 ----------------CNLLAFLVQGQVVGIVESVELCDFAGFARTVKL 233

[Close]

BLAST of Carg15051 vs. NCBI nr
Match: XP_023553425.1 (RNA-binding protein 2-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 5.5e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRS+KISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSAKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 93/225 (41.33%), Postives = 133/225 (59.11%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDT-----SGPHDLPNYYPRQDDRPILQGI 60
           M+D +W        PP  +     KRPR +YDT     +  +++ NY  + +   +L   
Sbjct: 1   MADGFWNRQQQHLPPPGGML----KRPRTEYDTAPSGVTSGNEVHNYIAQNNGHQMLNDT 60

Query: 61  KSVDSINESYERYLRSSKISSYGGQSARPVG--------GGVPGHSINDPPPIVGIGGVV 120
           K + S   +Y+R+L+S+ ++S+    A  +G        G +PGHS+ DP  +  + GV 
Sbjct: 61  KILGS---AYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVG 120

Query: 121 SGANV--NDRSASFGG----------GRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFR 180
            G ++  N R  +FGG          G   +PLP DAS+TL+VEGLPS  T+RE+AHIFR
Sbjct: 121 GGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFR 180

Query: 181 PFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           PFVGY+EVRLV KES++ G DP++L FVDF +PA AATA+ ALQG
Sbjct: 181 PFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQG 218

[Close]

BLAST of Carg15051 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVP-SVAGKRPRVDYDTSGPHDLP-----NYYPRQDDRPILQG 60
           M+D YW    ++QQ  S +P S   KRPR DY+      LP     +Y  R++DR     
Sbjct: 1   MADGYW----NRQQ--SLLPHSGLHKRPRPDYEMPA-SGLPSGNEMHYLSREEDRSGHPM 60

Query: 61  IKSVDSINESYERYLRSSKISSYGGQSARPVG--------GGVPGHSINDPPPIVG-IGG 120
           +K   +I  +Y+RYL+  ++ S+    A  VG        GG+P HS++DP  ++G  GG
Sbjct: 61  VKDSKTIGSAYDRYLQ-GQVPSFTSGEASTVGALGLQRGIGGLPNHSLSDPSAMIGRHGG 120

Query: 121 VVSGANVNDRSASFGGGRPNVP----------LPPDASNTLFVEGLPSSCTRREIAHIFR 180
                  N R  ++G   P  P          LPPDAS TL++EGLPS CTRRE+AHIFR
Sbjct: 121 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 180

Query: 181 PFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           PFVGY+EVRLV+KE+++ G DP++L FVDF +PA AATA+ ALQG
Sbjct: 181 PFVGYREVRLVSKEAKHRG-DPLILCFVDFANPACAATALSALQG 216

[Close]

BLAST of Carg15051 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.1e-31
Identity = 91/212 (42.92%), Postives = 118/212 (55.66%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYD----TSGPHDLPNYYPRQDDRPILQGIK 60
           M+D YW     Q  PP        KRPR D++    T        YYPR +D      + 
Sbjct: 1   MADGYWNQQRQQHHPPGG----PMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVP 60

Query: 61  SVDSINESYERYLRSSKISSYGGQSARPVGGGVPG-----HSINDPPPIVGIGGVVS-GA 120
              +I  +Y+RYL+S +    G  S    GGG  G      +I+D   ++  GGV+    
Sbjct: 61  DTRTIGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDD--FMLRRGGVLPLDH 120

Query: 121 NVNDRSASFGGGRP--NVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNK 180
             N  +  F    P     LP DASNTL+VEGLPS+C+RRE+AHIFRPFVGY+EVRLV K
Sbjct: 121 GPNGHTIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTK 180

Query: 181 ESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           +S++   DP+VL FVDF +PA AATA+ ALQG
Sbjct: 181 DSKHRNGDPIVLCFVDFTNPACAATALSALQG 202

[Close]

BLAST of Carg15051 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-29
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 38  DLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGG---------- 97
           D+ +Y  + +DR I   +K   SI  +Y+RYL+S +      + A P  G          
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 98  GVPGHSINDPPPIVGIGG-VVSGANVNDRSASFG-------GGRPNVPLPPDASNTLFVE 157
            +PG S+ +   + G GG + S    N R   FG        GR   PLPPD SNTL+VE
Sbjct: 271 MMPGPSMGE--LMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVE 330

Query: 158 GLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ 200
           GLPS+C+RRE++HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ
Sbjct: 331 GLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQ 388

[Close]

BLAST of Carg15051 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.0e-29
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRP  PLPPDAS+TL++EGLP++CTRRE++HIFRPFVG++EVRLVNKESR+PG DP VL
Sbjct: 25  GGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVL 84

Query: 181 GFVDFVSPAHAATAMDALQG 201
            FVDF +PA A  A++ALQG
Sbjct: 85  CFVDFDNPAQATIALEALQG 104

[Close]

BLAST of Carg15051 vs. ExPASy TrEMBL
Match: A0A6J1E5U3 (RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430853 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.5e-124
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVL 232
           GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFV RQM L
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVCRQMSL 231

[Close]

BLAST of Carg15051 vs. ExPASy TrEMBL
Match: A0A5D3CIZ5 (RNA-binding protein 2-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001280 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 4.6e-110
Identity = 217/288 (75.35%), Postives = 238/288 (82.64%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+GIGGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHLMND-PPILGIGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFV------SRQMVLRFQ 240
           GFVDFVSPAHAATAMDALQG+L + +         L N+     +      S ++VL+F 
Sbjct: 181 GFVDFVSPAHAATAMDALQGLLDSKLC-------GLKNLSVDPILHSASRKSGRLVLKFN 240

Query: 241 VVWLEECEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAG 283
                    +D+  H   G S CNLLAFLVQGQV GIVESVELCDF G
Sbjct: 241 YC-------LDS--HGVVG-SGCNLLAFLVQGQVAGIVESVELCDFTG 270

[Close]

BLAST of Carg15051 vs. ExPASy TrEMBL
Match: A0A6J1E554 (RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430853 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 4.6e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. ExPASy TrEMBL
Match: A0A6J1E5A5 (RNA-binding protein 2-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111430853 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 4.6e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. ExPASy TrEMBL
Match: A0A6J1J2D2 (RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482785 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.6e-109
Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYG QSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGEQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRD VVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDSVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 145.2 bits (365), Expect = 8.1e-35
Identity = 95/223 (42.60%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSV-AGKRPRVDYDTSGPH-----DLPNYYPRQDDRPILQG 60
           M+D YW      Q P SS P V   KRPR D+  + P+     D+ +Y  + +DR I   
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGT-PYLIPSGDMHSYLSQDEDRGIPHS 60

Query: 61  IKSVDSINESYERYLRSSKISSYGGQSARPVGG----------GVPGHSINDPPPIVGIG 120
           +K   SI  +Y+RYL+S +      + A P  G           +PG S+ +   + G G
Sbjct: 61  VKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNMMPGPSMGE--LMAGCG 120

Query: 121 G-VVSGANVNDRSASFG-------GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRP 180
           G + S    N R   FG        GR   PLPPD SNTL+VEGLPS+C+RRE++HIFRP
Sbjct: 121 GSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRP 180

Query: 181 FVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ 200
           FVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ
Sbjct: 181 FVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQ 220

[Close]

BLAST of Carg15051 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.6 bits (340), Expect = 6.4e-32
Identity = 91/212 (42.92%), Postives = 118/212 (55.66%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYD----TSGPHDLPNYYPRQDDRPILQGIK 60
           M+D YW     Q  PP        KRPR D++    T        YYPR +D      + 
Sbjct: 1   MADGYWNQQRQQHHPPGG----PMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVP 60

Query: 61  SVDSINESYERYLRSSKISSYGGQSARPVGGGVPG-----HSINDPPPIVGIGGVVS-GA 120
              +I  +Y+RYL+S +    G  S    GGG  G      +I+D   ++  GGV+    
Sbjct: 61  DTRTIGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDD--FMLRRGGVLPLDH 120

Query: 121 NVNDRSASFGGGRP--NVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNK 180
             N  +  F    P     LP DASNTL+VEGLPS+C+RRE+AHIFRPFVGY+EVRLV K
Sbjct: 121 GPNGHTIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTK 180

Query: 181 ESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           +S++   DP+VL FVDF +PA AATA+ ALQG
Sbjct: 181 DSKHRNGDPIVLCFVDFTNPACAATALSALQG 202

[Close]

BLAST of Carg15051 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 38  DLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGG---------- 97
           D+ +Y  + +DR I   +K   SI  +Y+RYL+S +      + A P  G          
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 98  GVPGHSINDPPPIVGIGG-VVSGANVNDRSASFG-------GGRPNVPLPPDASNTLFVE 157
            +PG S+ +   + G GG + S    N R   FG        GR   PLPPD SNTL+VE
Sbjct: 271 MMPGPSMGE--LMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVE 330

Query: 158 GLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ 200
           GLPS+C+RRE++HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ
Sbjct: 331 GLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQ 388

[Close]

BLAST of Carg15051 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-27
Identity = 84/201 (41.79%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           M+D YW     Q  PP        KRPR D+   G                  G  +V +
Sbjct: 1   MADGYWNQQRQQHHPPGG----PMKRPRSDFGGGGG----------------GGGGNVQT 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSIN-DPPPIVGIGGVVSGANVNDRSASF 120
           I++   R          GG    P+  G  GH+I  DPP  V                  
Sbjct: 61  IDDFMLR---------RGG--VLPLDHGPNGHTIGFDPPEPV------------------ 120

Query: 121 GGGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVV 180
             GR N  LP DASNTL+VEGLPS+C+RRE+AHIFRPFVGY+EVRLV K+S++   DP+V
Sbjct: 121 --GRRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIV 148

Query: 181 LGFVDFVSPAHAATAMDALQG 201
           L FVDF +PA AATA+ ALQG
Sbjct: 181 LCFVDFTNPACAATALSALQG 148

[Close]

BLAST of Carg15051 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 120 GGGRPNVP-LPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPV 179
           GG +PN+P  P   +N LFV+ LP   T   +  +F  + G+KEVR++  +   PG    
Sbjct: 162 GGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK---PG---- 221

Query: 180 VLGFVDFVSPAHAATAMDALQG 201
            + FV+F     +  AM  LQG
Sbjct: 222 -IAFVEFADEMQSTVAMQGLQG 235

The following BLAST results are available for this feature:

BLAST of Carg15051 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014691.1	1.8e-161	100.00	RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022923071.1	5.2e-124	98.70	RNA-binding protein 2-like isoform X1 [Cucurbita moschata]	[more]
XP_023553421.1	5.2e-124	98.70	RNA-binding protein 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6576639.1	8.2e-122	80.62	RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023553425.1	5.5e-110	99.50	RNA-binding protein 2-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg15051 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
G7ID19	1.3e-37	41.33	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
Q8H0P8	1.4e-34	44.00	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
A1A6K6	9.1e-31	42.92	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
F4HWF9	1.7e-29	43.89	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q6JB11	5.0e-29	72.50	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Carg15051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5U3	2.5e-124	98.70	RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430...	[more]
A0A5D3CIZ5	4.6e-110	75.35	RNA-binding protein 2-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1E554	4.6e-110	99.50	RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430...	[more]
A0A6J1E5A5	4.6e-110	99.50	RNA-binding protein 2-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111430...	[more]
A0A6J1J2D2	8.6e-109	99.00	RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148278...	[more]

BLAST of Carg15051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.2	8.1e-35	42.60	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	6.4e-32	42.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G21320.1	1.2e-30	43.89	nucleotide binding;nucleic acid binding	[more]
AT1G76940.2	4.8e-27	41.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	2.1e-06	35.37	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 135..211 e-value: 3.9E-4 score: 29.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 136..200 e-value: 1.3E-9 score: 37.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 134..200 score: 9.916748
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 130..204 e-value: 1.8E-15 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 13..201
None	No IPR available	PANTHER	PTHR10501:SF20	PROTEIN MATERNALLY EXPRESSED GENE 5	coord: 13..201
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 134..201 e-value: 3.59161E-31 score: 109.667
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 128..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15051-RA	Carg15051-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding