Carg06442 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06442
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PRA1 family protein
Location	Carg_Chr14: 9908560 .. 9909114 (+)
RNA-Seq Expression	Carg06442
Synteny	Carg06442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGACTACGGCACGATTCCAACCTCCTACGCCGCTGCCACAGCCACCGCCGCCAACCTCGAGTACATCTCCCGCGCCAAACAGCGCTTCAAAGACGGGCTCGGCCACCGCCGTCCATGGCGTCTCATGGCCGATTACCGCTCCTTCACTCTCCCTTCCAACCTCCACGACACTCTCGCTCGCATCAAAATCAACCTCGCTTACTTCCGTATGAACTACGCCATCGTCATCCTAATCATCCTCTTCCTCGCCCTCCTCTGGCATCCGATTTCCCTCATCGTCTTCGTGCTCATGATGTCCCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCTCTCGTTATCGCCGGCCGTGTTCTCCAAGATTGGATCATTCTCCTCGTCCTTTCTGTTCTCACCATCGGATTCTTGTTCTTGACCAACGCCTCGCTCAATATTGCCATCGCTTTGATCATCGGCGCCGTCGTCGTTTTGGCGCACGCCGCCGTGAGGAAGACCGAGAATCTCTACTTGGATGAAGAAGCTACTGGATTGATGGCGCCTGGATCGTAA

mRNA sequence

ATGACCGACTACGGCACGATTCCAACCTCCTACGCCGCTGCCACAGCCACCGCCGCCAACCTCGAGTACATCTCCCGCGCCAAACAGCGCTTCAAAGACGGGCTCGGCCACCGCCGTCCATGGCGTCTCATGGCCGATTACCGCTCCTTCACTCTCCCTTCCAACCTCCACGACACTCTCGCTCGCATCAAAATCAACCTCGCTTACTTCCGTATGAACTACGCCATCGTCATCCTAATCATCCTCTTCCTCGCCCTCCTCTGGCATCCGATTTCCCTCATCGTCTTCGTGCTCATGATGTCCCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCTCTCGTTATCGCCGGCCGTGTTCTCCAAGATTGGATCATTCTCCTCGTCCTTTCTGTTCTCACCATCGGATTCTTGTTCTTGACCAACGCCTCGCTCAATATTGCCATCGCTTTGATCATCGGCGCCGTCGTCGTTTTGGCGCACGCCGCCGTGAGGAAGACCGAGAATCTCTACTTGGATGAAGAAGCTACTGGATTGATGGCGCCTGGATCGTAA

Coding sequence (CDS)

ATGACCGACTACGGCACGATTCCAACCTCCTACGCCGCTGCCACAGCCACCGCCGCCAACCTCGAGTACATCTCCCGCGCCAAACAGCGCTTCAAAGACGGGCTCGGCCACCGCCGTCCATGGCGTCTCATGGCCGATTACCGCTCCTTCACTCTCCCTTCCAACCTCCACGACACTCTCGCTCGCATCAAAATCAACCTCGCTTACTTCCGTATGAACTACGCCATCGTCATCCTAATCATCCTCTTCCTCGCCCTCCTCTGGCATCCGATTTCCCTCATCGTCTTCGTGCTCATGATGTCCCTCTGGCTCTTCCTCTACTTCCTCCGCGATCAGCCTCTCGTTATCGCCGGCCGTGTTCTCCAAGATTGGATCATTCTCCTCGTCCTTTCTGTTCTCACCATCGGATTCTTGTTCTTGACCAACGCCTCGCTCAATATTGCCATCGCTTTGATCATCGGCGCCGTCGTCGTTTTGGCGCACGCCGCCGTGAGGAAGACCGAGAATCTCTACTTGGATGAAGAAGCTACTGGATTGATGGCGCCTGGATCGTAA

Protein sequence

MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRVLQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLMAPGS

Homology

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BLAST of Carg06442 vs. NCBI nr
Match: KAG6581856.1 (3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL
Sbjct: 436 MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 495

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV
Sbjct: 496 ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 555

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM
Sbjct: 556 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 615

Query: 181 APGS 185
           APGS
Sbjct: 616 APGS 619

[Close]

BLAST of Carg06442 vs. NCBI nr
Match: KAG7018291.1 (PRA1 family protein F2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL
Sbjct: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV
Sbjct: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM
Sbjct: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180

Query: 181 APGS 185
           APGS
Sbjct: 181 APGS 184

[Close]

BLAST of Carg06442 vs. NCBI nr
Match: XP_023528097.1 (PRA1 family protein F3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MTDYGTIPTSYAAA ATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL
Sbjct: 1   MTDYGTIPTSYAAAAATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV
Sbjct: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           LQDWIILLVLSVLTIGFLFLTNASLNI IALIIGAVVVLAHAAVRKTENLYLDEEATGLM
Sbjct: 121 LQDWIILLVLSVLTIGFLFLTNASLNILIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180

Query: 181 APGS 185
           APGS
Sbjct: 181 APGS 184

[Close]

BLAST of Carg06442 vs. NCBI nr
Match: XP_022956336.1 (PRA1 family protein F3-like [Cucurbita moschata])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MTDYGTIPTSY AATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL
Sbjct: 1   MTDYGTIPTSYGAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV
Sbjct: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           LQDWIILLVLSVLTIGFLFLTNASLNI IALIIGAVVVLAHAAVRKTENLYLDEEATGLM
Sbjct: 121 LQDWIILLVLSVLTIGFLFLTNASLNILIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180

Query: 181 APG 184
           APG
Sbjct: 181 APG 183

[Close]

BLAST of Carg06442 vs. NCBI nr
Match: XP_038899674.1 (PRA1 family protein F2 [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 6.7e-77
Identity = 157/184 (85.33%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YGTIPTS AA    AANLEYISRAKQRFKDGLGHRRPWRL+ADYRSFTLPSNLHDTL
Sbjct: 1   MTNYGTIPTSSAA----AANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIKINLAYFRMNYAIV+L+ILFLALLWHPISL+V  LM+SLWLFLYFLRDQPL++AGR+
Sbjct: 61  SRIKINLAYFRMNYAIVVLVILFLALLWHPISLLVLFLMLSLWLFLYFLRDQPLILAGRI 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           L+DWIILL+LS+LTIGFLFLTNA+LNI IAL++GA VVLAHAAVRKT+NLYLDEEATGL+
Sbjct: 121 LEDWIILLILSILTIGFLFLTNATLNILIALLVGAAVVLAHAAVRKTDNLYLDEEATGLI 180

Query: 181 APGS 185
           APGS
Sbjct: 181 APGS 180

[Close]

BLAST of Carg06442 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-42
Identity = 98/176 (55.68%), Postives = 129/176 (73.30%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YG IPTS  A  +   ++E +SRAK R K GL  RR WR+M D+ S  LP  + D  
Sbjct: 1   MTNYGAIPTSSHA--SPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAF 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
            RIK NLAYFRMNYAIV+LI++F +L+WHP SLIVF +++ +W+FLYFLRD+P+ +    
Sbjct: 61  TRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEA 177
           + D  +L+VLSVLT+  L LTNA+ NI  AL+ GAV+VL H+ VRKTE+L+LDEEA
Sbjct: 121 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEA 174

[Close]

BLAST of Carg06442 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-42
Identity = 99/179 (55.31%), Postives = 130/179 (72.63%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YG IPTS  +  + A +LEYISRAK R K GL  RRPW+ M D+ S TLP    D +
Sbjct: 1   MTNYGAIPTS--SHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAI 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIK NL YFR NYAI +L ILFL+LL+HP SLIV  +++  W+FLYFLRD+PLV+ G  
Sbjct: 61  SRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGL 180
           + D  +L+ LSVLT+  L LT+A+ NI  +L+  AV+VL HAAVR+++NL+LDEEA  +
Sbjct: 121 IDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAV 177

[Close]

BLAST of Carg06442 vs. ExPASy Swiss-Prot
Match: Q9LIC7 (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-38
Identity = 98/176 (55.68%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           M +   I TS  A  + A N E ISRAKQR KDGL  RR WR+M D  S  LP  + D  
Sbjct: 1   MANNDEITTSSHA--SPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVF 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIK NLAYFR NYAIVIL ++F +L+WHP SLIVF  ++ LW+FLYFLRD PL +    
Sbjct: 61  SRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEA 177
           + D  +L+ LSV+TI  L LTNA+ NI  AL+ GAV+VL HA +RKT++L+LDEEA
Sbjct: 121 IDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEA 174

[Close]

BLAST of Carg06442 vs. ExPASy Swiss-Prot
Match: Q9FZ63 (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-36
Identity = 86/183 (46.99%), Postives = 123/183 (67.21%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRA-KQRFKDGLGHRRPWRLMADYRSFTLPSNLHDT 60
           MT YG   T+  ++   A  LEYI+R   Q  + GL  RRPW+ M D  SF  P  L   
Sbjct: 1   MTTYG---TNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATV 60

Query: 61  LARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGR 120
           + RI+ N  YF+ NY IV+L  +FL+L+W+P SL+V + ++  WLFLYFLRD+PL +  R
Sbjct: 61  ITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDR 120

Query: 121 VLQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGL 180
            +   I+L+++SV+T+  LFLT+A LNIA+A++ GA+ VL+HAAVRKTE+L+  +E T L
Sbjct: 121 EIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 180

Query: 181 MAP 183
           + P
Sbjct: 181 LNP 180

[Close]

BLAST of Carg06442 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.2e-24
Identity = 67/165 (40.61%), Postives = 111/165 (67.27%), Query Frame = 0


Query: 25  SRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARIKINLAYFRMNYAIVILIILFL 84
           +RAKQ  +  +   RPWR + D  + +LP    + +A +K N++YFR NYA+ +L I+FL
Sbjct: 34  ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFL 93

Query: 85  ALLWHPISLIVFVLMMSLWLFLYFLRD--QPLVIAGRVLQDWIILLVLSVLTIGFLFLTN 144
            L++HP+S+I F+++   W+ LYF RD    +VI+G+ + D I+L++LS++T+  L  T+
Sbjct: 94  GLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTD 153

Query: 145 ASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEAT---GLMAPGS 185
              N+ ++LIIG ++V AH A R T++L+LDEE+    GL++ GS
Sbjct: 154 VGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGS 198

[Close]

BLAST of Carg06442 vs. ExPASy TrEMBL
Match: A0A6J1GW95 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111458066 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.0e-87
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MTDYGTIPTSY AATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL
Sbjct: 1   MTDYGTIPTSYGAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV
Sbjct: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180
           LQDWIILLVLSVLTIGFLFLTNASLNI IALIIGAVVVLAHAAVRKTENLYLDEEATGLM
Sbjct: 121 LQDWIILLVLSVLTIGFLFLTNASLNILIALIIGAVVVLAHAAVRKTENLYLDEEATGLM 180

Query: 181 APG 184
           APG
Sbjct: 181 APG 183

[Close]

BLAST of Carg06442 vs. ExPASy TrEMBL
Match: A0A6J1K8D2 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111492618 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 154/181 (85.08%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 4   YGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARI 63
           YGTIPTS A A   AANLEYISRAKQRFKDGLGHRRPWRL+ADYRSFTLPSNLHDTLARI
Sbjct: 47  YGTIPTSSATA---AANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLARI 106

Query: 64  KINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRVLQD 123
           K+NLAYFRMNYAIV+L+ILFLALLWHPISLIV ++MM+LWLFLYFLRDQPL++AGRV++D
Sbjct: 107 KVNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVED 166

Query: 124 WIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLMAPG 183
           W+ILL+LS+ TIGFLFLTNA+LNI IAL+IGA+VV+AHAAVRKTENLYLDEEA GLMAPG
Sbjct: 167 WVILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEEAAGLMAPG 224

Query: 184 S 185
           S
Sbjct: 227 S 224

[Close]

BLAST of Carg06442 vs. ExPASy TrEMBL
Match: A0A6J1GBU7 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452555 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.1e-76
Identity = 153/181 (84.53%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 4   YGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARI 63
           YGTIPTS A A   AANLEYISRAKQRFKDGLGHRRPWRL+ADYRSFTLPSNLHDTL+RI
Sbjct: 3   YGTIPTSSATA---AANLEYISRAKQRFKDGLGHRRPWRLIADYRSFTLPSNLHDTLSRI 62

Query: 64  KINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRVLQD 123
           K+NLAYFRMNYAIV+L+ILFLALLWHPISLIV ++MM+LWLFLYFLRDQPL++AGRV++D
Sbjct: 63  KVNLAYFRMNYAIVVLVILFLALLWHPISLIVLIVMMTLWLFLYFLRDQPLILAGRVVED 122

Query: 124 WIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGLMAPG 183
           W+ILL+LS+ TIGFLFLTNA+LNI IAL+IGA+VV+AHAAVRKTENLYLDEEA GLMAPG
Sbjct: 123 WVILLILSIFTIGFLFLTNATLNIVIALLIGAIVVVAHAAVRKTENLYLDEEAAGLMAPG 180

Query: 184 S 185
           S
Sbjct: 183 S 180

[Close]

BLAST of Carg06442 vs. ExPASy TrEMBL
Match: A0A6J1D4U6 (PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016960 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 148/185 (80.00%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAAT-ATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDT 60
           MT+YGTIPTS ++++   AANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDT
Sbjct: 1   MTNYGTIPTSSSSSSPGVAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDT 60

Query: 61  LARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGR 120
           LARI+ NL+YFRMNYAIV L+ILF +LLWHPISLIV  +MM+LWLFLYFLRD+PL++ GR
Sbjct: 61  LARIRTNLSYFRMNYAIVFLVILFFSLLWHPISLIVLAIMMALWLFLYFLRDEPLILVGR 120

Query: 121 VLQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGL 180
           V++DWI+LL+LS+LTIGFLFLTNA+LNI IAL+IGAV+V+AHAAVRKTENLYLDEEA GL
Sbjct: 121 VIEDWIVLLILSLLTIGFLFLTNATLNIVIALLIGAVLVVAHAAVRKTENLYLDEEAAGL 180

Query: 181 MAPGS 185
           + PGS
Sbjct: 181 IVPGS 185

[Close]

BLAST of Carg06442 vs. ExPASy TrEMBL
Match: A0A0A0LDF6 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G848860 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 152/185 (82.16%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YGTIPTS AA    AANLEYISRAKQRFKDGLGHRRPWRL+ADY SFTLPSNLHDTL
Sbjct: 1   MTNYGTIPTSSAA----AANLEYISRAKQRFKDGLGHRRPWRLIADYHSFTLPSNLHDTL 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIKINL YFRMNYAIV+L++LFLALLWHPISL+V  LM+SLWLFLYFLRDQPL++AGRV
Sbjct: 61  SRIKINLTYFRMNYAIVVLVVLFLALLWHPISLLVLFLMLSLWLFLYFLRDQPLILAGRV 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLD-EEATGL 180
           L+DWIILL+LS+ T+GFLFLTNA+LNI IAL++GA +VLAHAAVRKT+NLYLD EEATGL
Sbjct: 121 LEDWIILLLLSLFTLGFLFLTNATLNILIALLVGAALVLAHAAVRKTDNLYLDEEEATGL 180

Query: 181 MAPGS 185
           +APGS
Sbjct: 181 IAPGS 181

[Close]

BLAST of Carg06442 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-43
Identity = 98/176 (55.68%), Postives = 129/176 (73.30%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YG IPTS  A  +   ++E +SRAK R K GL  RR WR+M D+ S  LP  + D  
Sbjct: 1   MTNYGAIPTSSHA--SPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAF 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
            RIK NLAYFRMNYAIV+LI++F +L+WHP SLIVF +++ +W+FLYFLRD+P+ +    
Sbjct: 61  TRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEA 177
           + D  +L+VLSVLT+  L LTNA+ NI  AL+ GAV+VL H+ VRKTE+L+LDEEA
Sbjct: 121 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEA 174

[Close]

BLAST of Carg06442 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-43
Identity = 99/179 (55.31%), Postives = 130/179 (72.63%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           MT+YG IPTS  +  + A +LEYISRAK R K GL  RRPW+ M D+ S TLP    D +
Sbjct: 1   MTNYGAIPTS--SHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAI 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIK NL YFR NYAI +L ILFL+LL+HP SLIV  +++  W+FLYFLRD+PLV+ G  
Sbjct: 61  SRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGL 180
           + D  +L+ LSVLT+  L LT+A+ NI  +L+  AV+VL HAAVR+++NL+LDEEA  +
Sbjct: 121 IDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAV 177

[Close]

BLAST of Carg06442 vs. TAIR 10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4 )

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-39
Identity = 98/176 (55.68%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTL 60
           M +   I TS  A  + A N E ISRAKQR KDGL  RR WR+M D  S  LP  + D  
Sbjct: 1   MANNDEITTSSHA--SPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVF 60

Query: 61  ARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGRV 120
           +RIK NLAYFR NYAIVIL ++F +L+WHP SLIVF  ++ LW+FLYFLRD PL +    
Sbjct: 61  SRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQ 120

Query: 121 LQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEA 177
           + D  +L+ LSV+TI  L LTNA+ NI  AL+ GAV+VL HA +RKT++L+LDEEA
Sbjct: 121 IDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEA 174

[Close]

BLAST of Carg06442 vs. TAIR 10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1 )

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-37
Identity = 86/183 (46.99%), Postives = 123/183 (67.21%), Query Frame = 0


Query: 1   MTDYGTIPTSYAAATATAANLEYISRA-KQRFKDGLGHRRPWRLMADYRSFTLPSNLHDT 60
           MT YG   T+  ++   A  LEYI+R   Q  + GL  RRPW+ M D  SF  P  L   
Sbjct: 1   MTTYG---TNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATV 60

Query: 61  LARIKINLAYFRMNYAIVILIILFLALLWHPISLIVFVLMMSLWLFLYFLRDQPLVIAGR 120
           + RI+ N  YF+ NY IV+L  +FL+L+W+P SL+V + ++  WLFLYFLRD+PL +  R
Sbjct: 61  ITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDR 120

Query: 121 VLQDWIILLVLSVLTIGFLFLTNASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEATGL 180
            +   I+L+++SV+T+  LFLT+A LNIA+A++ GA+ VL+HAAVRKTE+L+  +E T L
Sbjct: 121 EIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 180

Query: 181 MAP 183
           + P
Sbjct: 181 LNP 180

[Close]

BLAST of Carg06442 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 112.5 bits (280), Expect = 3.7e-25
Identity = 67/165 (40.61%), Postives = 111/165 (67.27%), Query Frame = 0


Query: 25  SRAKQRFKDGLGHRRPWRLMADYRSFTLPSNLHDTLARIKINLAYFRMNYAIVILIILFL 84
           +RAKQ  +  +   RPWR + D  + +LP    + +A +K N++YFR NYA+ +L I+FL
Sbjct: 34  ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFL 93

Query: 85  ALLWHPISLIVFVLMMSLWLFLYFLRD--QPLVIAGRVLQDWIILLVLSVLTIGFLFLTN 144
            L++HP+S+I F+++   W+ LYF RD    +VI+G+ + D I+L++LS++T+  L  T+
Sbjct: 94  GLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTD 153

Query: 145 ASLNIAIALIIGAVVVLAHAAVRKTENLYLDEEAT---GLMAPGS 185
              N+ ++LIIG ++V AH A R T++L+LDEE+    GL++ GS
Sbjct: 154 VGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGS 198

The following BLAST results are available for this feature:

BLAST of Carg06442 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581856.1	1.0e-88	100.00	3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1, partial [Cucurbita argyrospe...	[more]
KAG7018291.1	1.0e-88	100.00	PRA1 family protein F2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023528097.1	1.4e-87	98.91	PRA1 family protein F3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022956336.1	4.2e-87	98.91	PRA1 family protein F3-like [Cucurbita moschata]	[more]
XP_038899674.1	6.7e-77	85.33	PRA1 family protein F2 [Benincasa hispida]	[more]

BLAST of Carg06442 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIC6	1.9e-42	55.68	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9C889	5.6e-42	55.31	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9LIC7	3.7e-38	55.68	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]
Q9FZ63	4.6e-36	46.99	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]
Q9FRR1	5.2e-24	40.61	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]

BLAST of Carg06442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GW95	2.0e-87	98.91	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111458066 PE=3 SV=1	[more]
A0A6J1K8D2	2.7e-76	85.08	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111492618 PE=3 SV=1	[more]
A0A6J1GBU7	6.1e-76	84.53	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452555 PE=3 SV=1	[more]
A0A6J1D4U6	1.7e-73	80.00	PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016960 PE=3 SV=1	[more]
A0A0A0LDF6	2.8e-73	82.16	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G848860 PE=3 SV=1	[more]

BLAST of Carg06442 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13720.1	1.4e-43	55.68	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	4.0e-43	55.31	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13710.1	2.7e-39	55.68	prenylated RAB acceptor 1.F4	[more]
AT1G17700.1	3.2e-37	46.99	prenylated RAB acceptor 1.F1	[more]
AT1G08770.1	3.7e-25	40.61	prenylated RAB acceptor 1.E	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 35..175 e-value: 1.3E-44 score: 151.3
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..180
None	No IPR available	PANTHER	PTHR19317:SF2	PRA1 FAMILY PROTEIN F2	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06442-RA	Carg06442-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane