Carg06383 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGCTCGGCAAGCTGACGAAGCTCAAATCCGCCATCAAACGCTGGCCATCCATCTCAAAACTCTCCCGCACCACCACCTCCTCTGCAGTCTCCGCCGCCGCCCTCGACGAAGACCACAATCTCCACCCAGTCTTCGTGGGCAGGTCCCGTCGCCGGTACCTCCTCTCCTCGGACGTTGTCCAGCACCCACTCTTCCAGGAGGTGGTGGACAAATCTTCCCCCAATTCCGATGAAGAGGGTGTTGTTGTGTCGTGCGAGGTTGTCCTGTTCGAGCACTTGCTGTGGATGCTGGAAAATGCAGACACCCAATTGGGGTCCGCCGATGAACTTGTCCAATTCTACACTTAG ATGGCCAAGCTCGGCAAGCTGACGAAGCTCAAATCCGCCATCAAACGCTGGCCATCCATCTCAAAACTCTCCCGCACCACCACCTCCTCTGCAGTCTCCGCCGCCGCCCTCGACGAAGACCACAATCTCCACCCAGTCTTCGTGGGCAGGTCCCGTCGCCGGTACCTCCTCTCCTCGGACGTTGTCCAGCACCCACTCTTCCAGGAGGTGGTGGACAAATCTTCCCCCAATTCCGATGAAGAGGGTGTTGTTGTGTCGTGCGAGGTTGTCCTGTTCGAGCACTTGCTGTGGATGCTGGAAAATGCAGACACCCAATTGGGGTCCGCCGATGAACTTGTCCAATTCTACACTTAG ATGGCCAAGCTCGGCAAGCTGACGAAGCTCAAATCCGCCATCAAACGCTGGCCATCCATCTCAAAACTCTCCCGCACCACCACCTCCTCTGCAGTCTCCGCCGCCGCCCTCGACGAAGACCACAATCTCCACCCAGTCTTCGTGGGCAGGTCCCGTCGCCGGTACCTCCTCTCCTCGGACGTTGTCCAGCACCCACTCTTCCAGGAGGTGGTGGACAAATCTTCCCCCAATTCCGATGAAGAGGGTGTTGTTGTGTCGTGCGAGGTTGTCCTGTTCGAGCACTTGCTGTGGATGCTGGAAAATGCAGACACCCAATTGGGGTCCGCCGATGAACTTGTCCAATTCTACACTTAG MAKLGKLTKLKSAIKRWPSISKLSRTTTSSAVSAAALDEDHNLHPVFVGRSRRRYLLSSDVVQHPLFQEVVDKSSPNSDEEGVVVSCEVVLFEHLLWMLENADTQLGSADELVQFYT Homology
BLAST of Carg06383 vs. NCBI nr
Match: KAG6581780.1 (Auxin-responsive protein SAUR78, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018233.1 hypothetical protein SDJN02_20101, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 230.3 bits (586), Expect = 8.4e-57 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg06383 vs. NCBI nr
Match: XP_022955880.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata] >XP_023527039.1 auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg06383 vs. NCBI nr
Match: XP_022980757.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima]) HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55 Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg06383 vs. NCBI nr
Match: XP_016902534.1 (PREDICTED: auxin-responsive protein SAUR71-like [Cucumis melo] >KAA0053538.1 auxin-responsive protein SAUR71-like [Cucumis melo var. makuwa] >TYK19130.1 auxin-responsive protein SAUR71-like [Cucumis melo var. makuwa]) HSP 1 Score: 199.1 bits (505), Expect = 2.1e-47 Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0
BLAST of Carg06383 vs. NCBI nr
Match: XP_011651720.1 (auxin-responsive protein SAUR78 [Cucumis sativus]) HSP 1 Score: 198.7 bits (504), Expect = 2.7e-47 Identity = 105/125 (84.00%), Postives = 111/125 (88.80%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy Swiss-Prot
Match: Q9C9E1 (Auxin-responsive protein SAUR78 OS=Arabidopsis thaliana OX=3702 GN=SAUR78 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.2e-31 Identity = 69/119 (57.98%), Postives = 92/119 (77.31%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy Swiss-Prot
Match: Q9LQI6 (Auxin-responsive protein SAUR77 OS=Arabidopsis thaliana OX=3702 GN=SAUR77 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28 Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy Swiss-Prot
Match: Q29PU2 (Auxin-responsive protein SAUR76 OS=Arabidopsis thaliana OX=3702 GN=SAUR76 PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18 Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy TrEMBL
Match: A0A6J1GWA8 (auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC111457732 PE=3 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 9.0e-57 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy TrEMBL
Match: A0A6J1IS54 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111480030 PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56 Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy TrEMBL
Match: A0A5D3D6I8 (Auxin-responsive protein SAUR71-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00520 PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47 Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy TrEMBL
Match: A0A1S4E2S4 (auxin-responsive protein SAUR71-like OS=Cucumis melo OX=3656 GN=LOC103499187 PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47 Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0
BLAST of Carg06383 vs. ExPASy TrEMBL
Match: A0A0A0LBZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646510 PE=3 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47 Identity = 105/125 (84.00%), Postives = 111/125 (88.80%), Query Frame = 0
BLAST of Carg06383 vs. TAIR 10
Match: AT1G72430.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 136.3 bits (342), Expect = 1.5e-32 Identity = 69/119 (57.98%), Postives = 92/119 (77.31%), Query Frame = 0
BLAST of Carg06383 vs. TAIR 10
Match: AT1G17345.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 125.9 bits (315), Expect = 2.1e-29 Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 0
BLAST of Carg06383 vs. TAIR 10
Match: AT5G20820.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 92.4 bits (228), Expect = 2.5e-19 Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Carg06383 vs. TAIR 10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 61.6 bits (148), Expect = 4.8e-10 Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 0
BLAST of Carg06383 vs. TAIR 10
Match: AT1G16510.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04 Identity = 24/83 (28.92%), Postives = 47/83 (56.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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