Carg11254 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11254
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 5680454 .. 5682862 (+)
RNA-Seq ExpressionCarg11254
SyntenyCarg11254
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TACGGAGAAGGAGAAGGAGGAGATGCCTGGTAAAGCCTCAGCTCCCGTAACAATTGTAGAGCCGTTCTTCCTCCACCTGATCTGCGGCCTGCCTTCTGGATTGCTCCTTATATCTACTCTATCGATCGCATCTCCGATCCTTCTCGCACTCTCTCTTGATTAGGGTACGTCTTCTCTCAACTCGCTTCAACTTCATCCCTCCTCTTCCTTAGGTTTCTGGTTTCGAATCTGCTTTCTACATTTTGAAGGATCTATCTTCTTCTCCTTGGTCAGTCTGTTGATTGTCCGATTGTGATTCTTCTTTACAGCCGGTATCGTACGGAGCGAGAGCAATGCTCGGTATAGTTGACTCTCTTTGCTTGTTTCACTTTACTCTATTTGTTCGTGGGAAAAAAGGTGTGGAGTGTTATGGAACCAAATAACGAATTAAAATTTGGACTGTGTTCTGTGCGAATTTGCAGTACTTGAAGGCTGTGGCGCGAGGCATACTTGGACTCCCTGCTGGTTAGTATGTAAAAGCTCATTCCACTTGCCTTCTTTTGATTTTTATTAGTTTAGATTGATAATAAATGAAACAAGCATTCATAAGGAAGCCCTCTCAAAAGAATGAGTCCTCATTGTGCAAAATAGAACCTATAGAAAAATATGAAATGGCTCGAATTTGTGTTAAGTCGTTAACTACTTCTCAGATAGCGTATGGCTCAAATTTGATATGAAATGAGACTTCAAATGTCGTGCTGTGAGAGTTTTTAGAAGTGTCAGAAGGATTGTAATAGTTGTTACACCATTTTTGTTTTTCTTATCCAAATGATACATAGCTGTTTGGTTCTGCTCGCTGAACATGTCATAATCGGATCGATGTGGCTTTTTCTTATGCAGGTGCTATTATTAATGCTTTTGGAGAAATAGTTCTAGGCGCTCCTATTGGTGCTTTGTACGTGAATGAGTGATTGAAAAGCTATACTTCACATCTTCCATGGATTGCAAGATTTGAATATTATGGTTTGAATGGAAGATTTAATCCAGAATTTGTCCTACAAATAAGTCAAGATCTACTCTCACTTACTGCTGGTATTTTATCACCAACCATTTGTGGGAACACTACGTTTCCCTTTTCTTTCAATTCATATTGTGAATATTTCGAGTGGAATTCAAATTGGGAAGAAGATTAATCATCAGTAGCATCATTCGTCATGGTTGATTGTTTTATCATTCGTCATGTCTTAACTTTCTCGAGGCTGAATCATGATGATCATTACATTTGTTACTTTATGTGCTTTCATATACATGCTCTGAGTACTTCTCCTTCGCACAGATACTTCTCAAAGACCCATAACTGGCCTCCAGACATATTATTCTCAGTCTGTTCAGTTAAAATATCTACGTGACGTGGATGCATTCTTTTACTTGTATAAGATGTTTAGTTAATACAATAAGGTGAATACAAACTTAAAATAAAATTTTTATGTGCAATTGCAGGCCAAATGGAACTGTTGATCACATGCTATGCATTTCAGCTCATGGCGCCATTATTGGAGAGTGATTTTGCGCATGGTCCACTTGATTGGGAAAGGCCACGGCAGGTACTTGCTCTTCTGCATCTGTGTTTTCCGCATAAAACTTGGGCATGGCAAACCTCAACGACATTCAATAATGTCAATTAACAATCTCTAGTTTGAACCAAGATTTTTAAAATATTACATGATTTCAAGGAATCTAAAGAAAAAAGAGTGAATTCAAGTCTACTTATATCTTCTAACCCATGGAAATTTAGTGATAGAAAGCTAGATGATAGTGCATAGTTTTTCTTGGATCTATTCGTGATTTCTAGGCATCCTAAGAGAGAAGAACGAGTCAAGTTTGCTCATCTCAAACTTGTGAACTTAAAAAGAATAATTCAATAGATATTCTATGTGACGATAGTGTTGTATGGGATTTGAACAAGATTTCAGGATTTAGTATCAAAAAATATCTCAACCTGCCTCGTAGGTTTGCAAAGTCGAGACAAGAAAGAGAAGCTTTGCCGTTGGTTGATATAGGCACATATATAATAAGCACCCTGTTTATGTTTACACAAGTTGACTTGTGAAGAGGCACCTGTTATTAACTACACAGTAATGGGACGATAGGGTTAATGCTTTTCTTCTCCTTTGTTCTTTTCAGCAGAGACGTGATTTAGAGGCTTTTCTAGGTTCTCCATTAACAAGTTGAACCAAAGTAAAGGCTTTGTAGCACGGTCATCAGAACCATCATCGAACAAGAACAAAAACTGAGGGAGAGCAGCTATTCTTGGAAGGTTAAGCAGCAGCCCACCCACCTAATCGTTCCTTAACATCGAGCCATTGCGTGCAGGGAAGCCTTCTTGCAAATGGGTTTGGTGTTGCTGCACCGATGTTGAGGCTATTATGA

mRNA sequence

TACGGAGAAGGAGAAGGAGGAGATGCCTGGTAAAGCCTCAGCTCCCGTAACAATTGTAGAGCCGTTCTTCCTCCACCTGATCTGCGGCCTGCCTTCTGGATTGCTCCTTATATCTACTCTATCGATCGCATCTCCGATCCTTCTCGCACTCTCTCTTGATTAGGGTACGTCTTCTCTCAACTCGCTTCAACTTCATCCCTCCTCTTCCTTAGGTTTCTGGTTTCGAATCTGCTTTCTACATTTTGAAGGATCTATCTTCTTCTCCTTGGTCAGTCTGTTGATTGTCCGATTGTGATTCTTCTTTACAGCCGGTATCGTACGGAGCGAGAGCAATGCTCGTACTTGAAGGCTGTGGCGCGAGGCATACTTGGACTCCCTGCTGGTGCTATTATTAATGCTTTTGGAGAAATAGTTCTAGGCGCTCCTATTGGTGCTTTATTTAATCCAGAATTTGTCCTACAAATAAGTCAAGATCTACTCTCACTTACTGCTGGCCAAATGGAACTGTTGATCACATGCTATGCATTTCAGCTCATGGCGCCATTATTGGAGAGTGATTTTGCGCATGGTCCACTTGATTGGGAAAGGCCACGGCAGGGAAGCCTTCTTGCAAATGGGTTTGGTGTTGCTGCACCGATGTTGAGGCTATTATGA

Coding sequence (CDS)

ATGGAACTGTTGATCACATGCTATGCATTTCAGCTCATGGCGCCATTATTGGAGAGTGATTTTGCGCATGGTCCACTTGATTGGGAAAGGCCACGGCAGGGAAGCCTTCTTGCAAATGGGTTTGGTGTTGCTGCACCGATGTTGAGGCTATTATGA

Protein sequence

MELLITCYAFQLMAPLLESDFAHGPLDWERPRQGSLLANGFGVAAPMLRLL
Homology
[Close]
BLAST of Carg11254 vs. NCBI nr
Match: KAG7018112.1 (hypothetical protein SDJN02_19980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MELLITCYAFQLMAPLLESDFAHGPLDWERPRQGSLLANGFGVAAPMLRLL 52
          MELLITCYAFQLMAPLLESDFAHGPLDWERPRQGSLLANGFGVAAPMLRLL
Sbjct: 1  MELLITCYAFQLMAPLLESDFAHGPLDWERPRQGSLLANGFGVAAPMLRLL 51

[Close]
BLAST of Carg11254 vs. NCBI nr
Match: KAG6581613.1 (hypothetical protein SDJN03_21615, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1   MELLITCYAFQLMAPLLESDFAHGPLDWERPRQ 34
           MELLITCYAFQLMAPLLESDFAHGPLDWERPRQ
Sbjct: 196 MELLITCYAFQLMAPLLESDFAHGPLDWERPRQ 228

The following BLAST results are available for this feature:
BLAST of Carg11254 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018112.12.1e-20100.00hypothetical protein SDJN02_19980 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6581613.13.3e-10100.00hypothetical protein SDJN03_21615, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg11254 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11254 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11254 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11254-RACarg11254-RAmRNA