Carg26847 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD Homology
BLAST of Carg26847 vs. NCBI nr
Match: KAG6588679.1 (Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022466.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Carg26847 vs. NCBI nr
Match: XP_022927736.1 (rapid alkalinization factor 23-like [Cucurbita moschata]) HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56 Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Carg26847 vs. NCBI nr
Match: XP_023530159.1 (protein RALF-like 19 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52 Identity = 112/119 (94.12%), Postives = 113/119 (94.96%), Query Frame = 0
BLAST of Carg26847 vs. NCBI nr
Match: XP_022989015.1 (protein RALF-like 4 [Cucurbita maxima]) HSP 1 Score: 213.8 bits (543), Expect = 8.2e-52 Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Carg26847 vs. NCBI nr
Match: XP_023531888.1 (protein RALF-like 4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51 Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q6NME6 (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.2e-14 Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q9FZA0 (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 5.9e-13 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11 Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 9.5e-11 Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1EIG3 (rapid alkalinization factor 23-like OS=Cucurbita moschata OX=3662 GN=LOC111434549 PE=3 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56 Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JL71 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486206 PE=3 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 4.0e-52 Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JIT9 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486203 PE=3 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 6.7e-52 Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JN66 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486205 PE=3 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 3.7e-50 Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1EI16 (protein RALF-like 19 OS=Cucurbita moschata OX=3662 GN=LOC111434550 PE=3 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49 Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of Carg26847 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 ) HSP 1 Score: 77.8 bits (190), Expect = 6.5e-15 Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0
BLAST of Carg26847 vs. TAIR 10
Match: AT1G28270.1 (ralf-like 4 ) HSP 1 Score: 75.1 bits (183), Expect = 4.2e-14 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0
BLAST of Carg26847 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 ) HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12 Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 0
BLAST of Carg26847 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 ) HSP 1 Score: 64.7 bits (156), Expect = 5.7e-11 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of Carg26847 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 ) HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10 Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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