Carg27085 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27085
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontrafficking protein particle complex subunit 6B
LocationCarg_Chr10: 8116168 .. 8128282 (+)
RNA-Seq ExpressionCarg27085
SyntenyCarg27085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGATGACTCCTCGTCGTTGCTTGAGCATCTTCGTCATACTTGGAGTCTTACACTTATGGCTTGGGTCACTCCAACTAGTAACGGGGTTGTATGGGTTTACTTTGGTGAGATATATATTTTCGTGTCTTGCCATGTAAAGTTATGACGAGGTTGTATGGGTTTACTCTGGTGAGATATAACGAGGTTGTATGGGTCACTCCAACTAGTAACGAGGTTCCATTACACTATGTTATGAATGAAATGAAACGTTATGTATGTCATTTCATGTCTTGCCTGGTAAAGTTACGTGATGGATTATGTGATGATTGTCATGTTTACATAATGCATATATGTAATATGTCTTGGATGAAAGCAGAAAAGAAATGATGTTAATACTATGCTATGAATGTATGAATGTAAATCATGGGGACCTCATGCATGTATCTATGTCATGCGCATCGGGATATTTCTTCGTTATGTGATGTAAGTACGGATGCATACCTTCGATATTATGTTCTCCATGATATCATGCAGGCTTTTCCTTTTCTGTGGCATTCGGTAAAGTGTAACGTGTTGTGTCTGACCAAGTTAGACCTAGGGGTACGTACACGAGCCTGCCTAGTGGGTCCAAAGTACCATACATCCAACCCTGCCTGAAACTAGAAAGAGTCCAAGGCCATGTAACGGTTTTAAACGATAGGTCCCAATCATATTATATGTGTGATTGCATTACTAACCCAAAACATTGGGGTGACTCACTAAGTATTTCTTAAAATACTCAAGCCCTGTGCTACTAGTAGCACTATGACATCGACGTCCAGTACCACCTTTGGAAGGCCAACGTGGTTGCCGATGCCATAAGTAGGAAGACGGTTCATTCGTTAGCATTAATCATGAGAGAGCCCCGAGTACAAACAAATTTTCTAACAAGCTGGGATAACAGTGACAATGGAAGGAATTAGAGCACAGCTAGCCCAACTGACAGTCCAATTCACACTCCGACAAAGGACCATGTTTGCATAAGTAGGAGACCCTGGGTTAGGAAAAACACTTAATGAGTTAACAGTAGGACCAATTGATAGCTTCTTCACATCGTCTAATGGCAAATTACTGTGCCAATGATGTTTGTGCATACCGACAGTGGAAGAATGGAAAATGAGATACTAGGCGAGACATATAATCCCCATTCGCTATGCACCCCGGTGGTACCAAGATGTATCAAGATTTAAAGCAACATTTTTGGTGGCGTGGTGTGAAGAAAGACATAACAGAATTTGTGAGTGAATGTCTAGTATGCCAACGAGTCAAAGCACCTAGACAAAAAATGGCGGGATTGTTACAACCCCTCAGTGTGCTAGAATGGAAATGGGAGAATATAGTCATAGATTTTATAGTATGGTTGCCAAGAACGTTGAACAGTTACACAATCATATGGGTAAATTGTGGACAGATTGACAAAATCAACACATTTTCTTCTGGATAAAGCCTACATAGTGGACAATTGAGCACAGTTATACCGGAAGAAAATTGTTATATTGCATGGAGTTTCTGTGTCAATTGTATCAAATCAAGACCTACACTTTACGTCGGCATTTTGGTGTAGACTTCAGAAAGCGTTAGGTACTTGCCTGGATTTCAGTACAACTTTTCACTCATAGACAGATGGTCAAACAGAACGTTTAAACTAAGATCCTATAAGATATGTTATGTGCCTTTGTATTAGACTTCGAAGATAGCTGGGACATGAAATTACATTTAAGGGAATTTGCCTACAATAACAGCTTTCAAGAAAATTGGCATGACACCGTAAGAGGCTTTGTACGGAAAATGATGTAAGACTCCATTGTGTTGGGACGAAGTAGGGGAACGTGAGTTGGTAGGTCATGAATTAGTTCATGAGGTGGTGCAAAAGATCAGATTAGGAATGCACACTGCTCAGAGTAGACAAAAAAGTTATGACGACAAAGGAGCCTAGAATTTGAGGTGGGCGACATGGTATTCTTGAAGGTGGCCCCAATGAAAGGTGTTTTAATGTTTGGACGCAAAAGCAAGTTGAGTCCACGCTTTATCAGACTCTTTGAGATCTTAGTTTGGATTAGACCTGTAGCATATAGGTTAGCCCTGCCACAACCCCTCCCACGTCAGATCCTAGTTCGGATTAGACTTGTAGTGTACAGGTTAGCCCTGCCACAGCCCCTCCAACTGACGTGGGATCTCATAGTCCATCCTCCCTTGGGGGTCAACATTCTTGCTGACACACCACCTGAATTATACCTACGATTTAGAGTATTTTTGTAACAGCCCAAATCCACTACTAGTAGATATTGTCCTCTTTGGGCTTTCCTTCTCTTTCAGGCTTCCGCTCAAGGTTTATGCTAGCAAATATTGTCCTCTTTGGGCTTTTCCCTTCTCTTTCGGGCTTCCCCTCAAGGTTTCCAAATGGTGCTTTGTTCTCATCCCAAGGGACATTATAGTCCACCCCTTTGGGGCCAGCGTCCTCGCTGGCATTCTTTCCTATCTCCAATCGATGTGGAGACCCCTGCCAAATCCACCCCCTTTGGGGGGTGTTTTGTTCTCTTCCCCAACTAATGTGAGACATCACAATCCACCCCCCTTCGGGGCCCAACGTCTTTGCTGATAGTTTTTCCTTTCTCTAATTGATGTGGGACCCCCGCCAAATCCACTCCCTTTGGGGCCAGCGTTCTTACTGGCACACCGTCTCGTGTCACCCCCTTTGGGGAAGAGCTTCCTCGCTGGCACATAGTCTAGTGTCTGACTCTAATATCATTTGTAATCGCCCAGATCCACCCGTTAGCAAATATTTTGTAACGGCCCAGATTCACTGCTACCAAATATTGTCCTGTTTGGGCTTTCCCTATTGGGCTTCGAAGGTTTCCATAACCTTATAAAGGGTGTTTTGTTCTCCCCCAACGAATGTGAGACATTACAATTTTAATCCTTTGATTTAATATTAAAATTTTATATTTTCCATATTTTTAATTAAAAAAAAAGGGATTTTTTGCCATTTTTTAATATGCATAATTAAATTTGAGTATTCATATTGTAGACTTAAAATTTAAGTTTTCACCAAAAAAAAAAAAAAATCCGTTCATACGACATGTCGTCATTTAGTAGATGAATCTAGATTCAGGGCGGAATCAAGGCACTGAGTCGATCCTCTCATCCTCCACCTCGCTCTGCCTTTCCTTTCCAATTCCGTCGAAGTGAACTTCAGTTTCAACAATTCCGCTTGATCGCAGAGAAGAAACACATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAAGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTTCTCCACCGCACTTTTTACCCTTCTTTTTGTATCTGTGAATTGTCTCGGGATCGGGATTCTTTGTTGCTTAGATTTTGATTTCTAGAGTTGGCTCATGGATCTGTTGTTGCATTTTGACGTGGTTATTGTCGTTAGGTTTTCTATTTTATTGAATGTGTATGTTTGGGAGATTTATAATTGAGCATGTGAAGAACAATCGTTGGGCTTAGAATTGCAGGTTAGAAGTGTTCCTCTAGCTCTGATGGTCTCACCATGACATTTTTTTTTAGGATAACTCGGTTTGTATCAAAGACGACCTCTAGAAAGTGTTTTGTGAGGTCTAGAGACCCATAAGCCTCAAAGGATCCAAGATTTTAGACCCATTAGCTTAATCACTAGTGTATGTAAAATTCTGGCCAAGATCTTGGCGAATAGGCTTAGGAAAGTCCTCCCTAGGACTGTCTCTGATTAGCCAGGGGCCTTCATTACTAGAAGGAAAATGTTGGATTAGGCTCTTCTAGCTGATGATGCCATTGATGATTATTGTACTCGTAAGCGTGAGGGGGTTATATTCAAGATTGATTTTGCTTACGATCATGTGGATCAGAATTTCCTAGATAGAGCCTTGGGTAAAAATGGTTTTGGGTACATATGGAGGCTTTGGATCCAGAGTTGCGTTAGGATGGTTAGGTATTCCATTTTTGTTAGTGAAAATCTCGGGGTAGGATTCATGCCACTCAGGGTTCTAGATAAGGTGATCTTCTCTCTCCCATTCTTTTCCTCTAGGTGGTGTACATTTTGAGTAGGATTGTTTCGAGAGGAGTGGAGAAGGGGGTTGTTGAGGGTTTTCATGTGGGGAAGGATGTCTCATCTCCCGTGTGATGATGCATAGTCTTTTTGCTCGAGGAAAGAGGAGTCATTTGTCAATCTTAACCAGATCTTTTGGTTCTTTGAATCTATCTCAAGTTTAAAGATTAAAAAAGGCAAATGCTCTGTTATTGGTATCCTAGATAGCCCCTCCAAGTTGGAGAGATGGGCTTTTTGGGTGAGTTGTGAGGTGGGGTTGTTCCTTTCATCTTTCTTCGGTCTCACCCTTGGTCATAACTATGGGCCTTTTAGGACCCATGGTGGAAAAAGTTCTGAAACATTTATCCTTTTGGACAAAAGGATTTTTCGCTAAGGGAAGGAGACTTACCGAAATCCTGTCAATTCTTAGTGAAATCCTTATTTACTTGTCTTTATTTAGGAACCATGTGAAGGACTGCAATACCCTCGAGAGACTTAGGTGTAACTTTTTATGGGAAAGGGTGGAGGAAGGGAAGGGTTCTCACTTGGTTAGTTGGGAAGTTGTTGATAGAATCCAAACAGAACTAGAATATTATTGAAATATAAAAGATAAGAACTACAAGATAAACCAAGTGCTGAAGCCCTAATTCACTCACCAAAATAATGCCTAACCCTCCTCTCTCTATTTATAACAAATCCTTTAATAACACTCTTCCCTAATTGCTACTATACGCTTAATATCCTAATAATACTCTTACAGCATCCCTATCATTACCCGTCCCTAAAAACACATTGTTGAGAAGGTGTGGCTAAACTACAAAAACCAAAATTGAGCAACCTTTTTTATTAATGTATTCACCCCTTTAGAATTGAAACCTAGCATTCTCGAATATAAAATCCGGACGGTCCAGCACAAAAGTCAGGATGTGCAGCAGTACTAGTGAAAAATAAAGGAAGTCAAACGACATATGCGGCCGCCAACAACGGACAAGTAGGATAGCTTAATGGTGTGATTTTTCCCGGTAGAAGTGATGCAGCGTAGGTGAAAAACAGATCGTAGTGGCTGGTAGATTGGTTTTCTTGCATGTGTACGACGACAAGTTGGATTTTGGGTTTAAAATAGAAGACAACACAACCCAAAGCACATATTTTGTAATAACCTCTTTTTCAGAAAACAAATGCGTTTACCCAACTTACCCAAATCCAGCCCATTAATCAGCTTACAGCCCCACTTTGTTCCAGAACCTTCTTTTTTCTCACAATGCATGTGATAACAGATAACAAACTTGATGTACCATGATTTTTTTGGATCTTTCTTTTATGTTTCTTTTAAAGATCTTGTATTTTCTTTTATGTTTCTTTTAAAGATCTTGTATTTTCTTTTAAGTTTTTTTAAGTTCTGGCTTTCTTGTTCTTTAGTTTATCGTGGGTTATTTTTGAATTACCCTTTGACCAAGTTGGGTATTGTTTTGAGGGTTCTGTGGTTAGTTGGCCAGCTTGTGACCTTATATATCTAGACCTTCGGTTGTATTTTGGCATTCAATTACACCATACAGAAGTTTTGATTCAAACCAGTCTTTACTACATTATTTTGGTATCCAAGCATCTGACAAGGGGATCTAAATGGCTGGGCAAAAAAACCCAACACCTCCGGTGTTGATGCAGCTCAAACCGGTGAGGAGGATGAATTCCTCTCTCCCTGAACAATTTCTCACTTTATCCTCAGAATGGAAAAATCCATGGGAGAGATGAGAAATAGTCAACATGAGCTTTTACAACTGATGAAAGCTATGACCGAAAAAATGGATGGCCAAATTACAATTAGCAACAATGTAATTACGGACACAATGGAACAGAACATTGTCGGCCTGAAAAACAACCATTATATGACACAAGAAGGTTGCAAGAAACATACCACCATCTATTTGAAATCAACCTCTAGAATATTACGAAGGAGTGGAACTCCAAGTTTACCAAAGACCACCTTAAGATATGGCATGAAGACTGTAAGAAAATCCAAGAAATTTGCCTCCGCTAGGTAGAAATCAACCACAGGAAATATACATAGAAGAGGTCCTATACTACCAACTCGAAAGTCAACATTGGGCAAGAAGACCTAAAGAACTTCCAAGAAATGTACTTCCACCCATTCAAATTCAAGAACTTCATACTAAACAATTTGTCTTTGCAGATGTCGATGGATATTTCAAAAAGGAAAACTCATTCAAACAACGGTGAAATTCGGGGAAGGAGAATTTTTTTCATGATTTTGATGATTATTTTAAGGATAGCCATGAACAATTAGAGTGGGTAACAATAGAATACATGTTGGATTTTCTTTATATTTTTTGTAATATTAGATGTGTATTATGTGATTAATGCCCGAGTAAAGGAGGAGTACATGAATAAATTAATACCACATCTAAATGAGAGTGATCCTAATGATAGGTTGGTTGAGAAAGGCTTAAAAGAATTGAAGTTACTGTCTATACCAACAAGGTGCATCTTCCTTTTCGGTGGCTTGAAACACCAAAATTAAGCATGCTCAGCTTGGAGCAATTTTATATTGGGTAGCCTCCAAATAATTTTTCTAGGATGCATATGAGTGAGGACGAAACGTGTTGAAAGGACCCGTGTTGGTCTGTGAGGATAGTGTTTACTCTTAGAAGCACTTCAAGACAAGCAAATAACGTGATCACGACGGATGTAGAAGAATGCCAAGGTCATTATATGTCAAATTCAGATTTCAAATCCTAATCATCCGAATCCGAATCCGAATCCTGAGCATGAGACGTTACAAGGCGTATTTATCCGTTATATCTTTAAGATTTTTTTCCTTAGTTGAAGATGATCTTTCTTTAATATAAAAAGACCATGTATTTGATTCATAGAAGTAAGAAGAAATACAATAGTATTTTCTTCCAAATTCAAGTTGGTGCAAGAATCCTAACTTTTGGAAACCCTAGCCTCTACAGTCATTGCCGTTTGAACCCTAGCATTAATCATAAAATGACAATTTTACTTTTGATGGTTTCTTTGTGTTTGAGAAGTTCTTGTTCGTTCGTTGGTTTCTTCATGTGATTCTTGCTTGTTCACAAACGTAGTTTTTGCTCATTCATTGATTCATTGCAGTTCTTGTTCATCAGTTGGTTTGTTTGTGTGATTTGTGAGTGTTCATAGATCTAAGTTTTCTTTTGTTCAACAATTGTGTTGGTTGTACATCATGGGTATAACCACAAAAGTTTTACATCGGTCAATTGAAGCTCTATTTGCTGCTCCGCAGAGACGGTTGTCATATAGTTCCTCGTTGCAAGTGTTAAACCATTCTTCTTTGTGGTTGTTGTGGGTCTGAAACCAATATGATTTGGTTTTTTTTTTTTTTTCTCTTTTGTCGGTTCAAGTCTGGTTCGATTCAGGCATGGTCAATTGGTTTGGTTCCATTAATATTTTGGTTCGGTTCTAAATCTTGGTTTGGGGTTTCTTTCTAACTAGACATTATTTGTTGCTAACTCAAGTTACTTCAGTATGGAACAAATTCATTGACCCCTACAACTACTACAAACCAATTTGCCATTTGGTGTTCTTTGTGTTTCCTTGAAAGAAATAGGTAACTATCTTCATGCCTTTTCTTGTAATAATTCATCTTCGTAGATCATTGATTTTGGAGCCACTTATCACATTATCATTTTTATTTGTATTCTCATTTTACTTAATTCATAGTGATGTGTGTGGTCCTCTAAAATTTTGACTCGTAGTGGTAAAAAGTAGTTTGTTGCTTTTATGGATGATCACACACACTATTGGGTCTACTTAATGACCAAGAAATTTGAGGTAAAATATCTTTTCATTTTGGAAACATGATTGAAACTCGAAATTGAAATCAGCACTTTACACTCTTGACAATGAAAATAAGTATTTCAATAAGTGATTTTTAAAAGATAAAAGGTGTTTTACATTCATCTACTTGTCGAGATACTCTTCTACAAAATTGAATTGATGAATGGAAAAATAAAAATTTACTTGAGTTGCATGTGCCATAATGTTTGCTATGCATGTTCTTAAGTATTTATGGGGGAGTTGTAACCATGGCTACTATTTGATAAATAAGATGGTTGTTGTGAATATTACATCCTTTTTGTAAATTTCAATCATTAATGAAGTCTCTTACCAAAATTTAAAATTTTTGAACCCCATGAATGTCTTAAAACTTTTTTTTCCCAACTTCTCGCATACATTTGGATTTACCTATAAAAAATTTTGGTTGCATCGCATAGGTCCAAATACCTAGCTTTTTCTACCAAAACTTGATCATAGGGCCACAAAATGCATTTTCTTGGGTTATGCTTCAAATAAAAAAGGGTATAAATGTTTTGATCCTCACAGAAATCTTTTGTGTTCTTTTTACAAAAACAACCATATTTTACCCAAAATTCTCTTCAGGAGGTGAAGTCAAATTTAGAAGATGTTTTTTGGGAAATATTTGAGTCCCTTCCTTTTGTCATTCATCTAAACTTGTCTGTTCCAAGTCCTTTGATGTGAATTATAAAAACTTCTCGTTCATCTAAACTTGTCTGTTCCAAGTCCTGTGATGTGAAGTATAAAAACTTCTCATTTAGGGAGACATACTATAAAATGACCCTAAAGGTCAAGATCCAAGTTAAAGTTCCAAGGTCAATCAAAGGAACGAAGACTAGATTTTTAATTCTACACAAAGCTAGTTTGAAATTTAGAAAATGATGCTGGAAATTCCAAAGATAAACGTAGAATCTAAGGACCAAATTCACTCGAAAATCTCTTTTGACCCTTGAAGAAACTATCATTTCTCTCACCCCAGAGGCGGCAAAATAGTACACACCACCACCTACCACAAAAACGTCCATTCTCTAGAGAATTGAATGGAGTAGGAGATCGTGATCGTCTCTTTACAATCCCGACATCTGGTCAAACAGTAATCAAACACCTCAAAGAAGTAACTCCAAATAGTATTAGAAAAATCATACCCCGAAAGAAGATTAATCCCTATCCTTTGTCGCCCACAATACAACAAAATGATCTGATCACCATGGACCCCCTAGCCGATTTGGTTTAAGGTATTAACTCTTCCATGCATAACCTGCCAAACAAGAACTTGACTTTCTTGAAAATCTTTACCTTCGGCATAGAGGAAAAAAACGGAAACTGTTGACCTAAGGAGAGGGGGAGGAGAAATACTGACTAAACACAAAAAGAAGAATTACAAGAGAAACCTTTGGATAGATAGGGGCTCTGAAAGCAAACACCCCCATCAGGGTTAAAGTGAGAGTCTCCAACAAAGGTAACGAGTCCAAAATAGCCCTCATTTTCCTATTGGTCAATAAACAGGAAAAATCAAGAGAAGGAGAAGCCAGATTCTCAGAATGAGAAAGAATTGAAGGAACTGAGTGAAAAATTGACGAGGACAACTGATATAACCGAGAAAACTAGGAGCATGACTACCTTAGGGGTTGTGAAGGTGGATTGAAAGAAATTATTGGAAATTTGCAGGTTGGAGAGATGATCATGTGTTTATGGGTGATACCAAGTTTTATACGTTTGCAGGTGACACTGAAATCCTTGTTCAGGCTATTAAAGGGTAGGGCCAGAGTGTTTTAGTTGAGCTGAGGGCAAAGGTAGAAGAGGAATTGTTGTGTACTTATGTATTGGAGGAAATTCAACAAGGCTTGGATAAATTTCCCTCGGGTTTCAAGCTTTTTACGGATCTACCTCCATTGCAAAACTAGGACCATACTATTGCATTGTTACTACTTACTAGTTATATCTTAGATAAATCACGTTCCCTATCCTTATCCACCATTTCAAAAGGATGAAATTGAGTGGTTAGTTATCGGAACGTTATTAAATGGGATTGTTCAACTGAGCACTAGATTGTTTTCAAGCCCTTTTTCTTTTTATCGATTAAGAACTTGCGTTTTTATGTTGGTTATAAAGCTTTAAGTTGAGTAATGATTCCAATCAAATATCCCATTTGAGTTGCGGATGAATTGTTCGATGAACTCTATGCAGGCATTATCTTTTCCAAAATCAATTGGAAGGTTACCCCCGATTAAGCAAGCTCTTACTAGATGATACCCATAGTAACGCCGTGAAGGTTGACTAACATTTCCTTGCATTTCCAATCTCTTAAGATTAATATCCTTCGGCCTTTTCATACAGGTTTTCTTGTCCTTCTTTTATGATATTCTGGTTTGTAGTGTCAATTCAACGATCATTTAAGCTTTCTTGCAGCAGTTCTTCAGGTGCTTTGGGAGCATCAGTTAGTTGCCAATGGTAAAAAATGTCAGTTTGCATTATCCCACATCTTGTATTTGGCCACTAGTGTTAGCTTAACCGATGTAGTTATCCCTAATGCTTTCTAAAATCGCTGCAAAGGATCAATGGCATGAAAATTTGGAGGATTCTAGGTGTAGCGACCCAAGCCCACCGCTAACAGATATTGTCCGCTTTGACCTATTATTGCTGTTAGCCTCATGGTTTTTAAAATACGTTTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTCCTCTCTATTATGTACCTCTCATACTAATGCAAGAATCTCGCCCAACAATGTGACGAGTAGTTGCGAGTAGGAGGGGTATATAGTAGATGTGAAGATGGAGGGAGGGTATGCTTTATTAGGAAAGGAGAAACTGGGAACTCTTTGATCTTCCTCCAGTGATTTTCTTTTCCTTGTTTTGCTTGTGTTTGACTCAAATTAAATTTTCTGCCAAGATTTTCTAATACATTATGACTTGGCTTCCATTTTTTCTTGCCCATTTTATGGTTTTTTTATTCATGCTATTTGATGGTTAAGTATTGCAACTCAACTACCGATCTTTATTTTCACTAGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGTATGATCAGAAGCCAAACTTAGGAGAAGCCCTTTCTTTTTCCTGTGTACTTCATCCTACATGAACTTGGCTTAAATGTGAGAAATTATTTTGATTCCCAGGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTCGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTAAGTAAACAAACTTCATCATAATATCCACTTTTCCTTCTTTTGGGTTGAGAGAAATGAGTCTGATCTGCTGAAATCGCTTATGTTATGAAACAGGTTCATTTGTTGTTCGCATAAAGGTTTGATGTCTGTGTGGGACAATGAAGATGCGCTACGTCCTCAACGCCGCCTCCAATTGTAATGCCTTCTTTCTTTCTTTCTTCTGTTTACTTTCTTTTTTACCTTTCTCTATTTCTCTCTCCTCTTCTAAACTATTGAAACTTTTAGCAAAAAAATTTGACCAATGCTTGTGAATGTATGAAAGTCGATAGCAATTATTTTTCAGAATTTCAAGATTTTAGAAGTATGGTGACGTTTATTCCTATTTTACCATTTGGGATGATGGATTTATATATCATGGTGGTCACCGGTATAGGTTGTTAAAATCGTACGAGTTTCTGGATAACTAAATATTGTAGATCTGATAGTTTATGAGAGATCAATGGAGTTACGTGTTAAAACACTTTTAGATAGTATCTAAGAAATGATACATAGGTATCAAAACGGTAAGAAATACATATGCATTATCATTATCCATGGTCACTCGCATGGTTGGTATATGT

mRNA sequence

AAGGATGACTCCTCGTCGTTGCTTGAGCATCTTCGTCATACTTGGAGTCTTACACTTATGGCTTGGGTCACTCCAACTAGTAACGGGGTTGGCGGAATCAAGGCACTGAGTCGATCCTCTCATCCTCCACCTCGCTCTGCCTTTCCTTTCCAATTCCGTCGAAGTGAACTTCAGTTTCAACAATTCCGCTTGATCGCAGAGAAGAAACACATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAAGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTCGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTTCATTTGTTGTTCGCATAAAGGTTTGATGTCTGTGTGGGACAATGAAGATGCGCTACGTCCTCAACGCCGCCTCCAATTGTAATGCCTTCTTTCTTTCTTTCTTCTGTTTACTTTCTTTTTTACCTTTCTCTATTTCTCTCTCCTCTTCTAAACTATTGAAACTTTTAGCAAAAAAATTTGACCAATGCTTGTGAATGTATGAAAGTCGATAGCAATTATTTTTCAGAATTTCAAGATTTTAGAAGTATGGTGACGTTTATTCCTATTTTACCATTTGGGATGATGGATTTATATATCATGGTGGTCACCGGTATAGGTTGTTAAAATCGTACGAGTTTCTGGATAACTAAATATTGTAGATCTGATAGTTTATGAGAGATCAATGGAGTTACGTGTTAAAACACTTTTAGATAGTATCTAAGAAATGATACATAGGTATCAAAACGGTAAGAAATACATATGCATTATCATTATCCATGGTCACTCGCATGGTTGGTATATGT

Coding sequence (CDS)

AAGGATGACTCCTCGTCGTTGCTTGAGCATCTTCGTCATACTTGGAGTCTTACACTTATGGCTTGGGTCACTCCAACTAGTAACGGGGTTGGCGGAATCAAGGCACTGAGTCGATCCTCTCATCCTCCACCTCGCTCTGCCTTTCCTTTCCAATTCCGTCGAAGTGAACTTCAGTTTCAACAATTCCGCTTGATCGCAGAGAAGAAACACATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAAGCAATCGGCTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTCGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTTCATTTGTTGTTCGCATAAAGGTTTGA

Protein sequence

KDDSSSLLEHLRHTWSLTLMAWVTPTSNGVGGIKALSRSSHPPPRSAFPFQFRRSELQFQQFRLIAEKKHMGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Homology
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BLAST of Carg27085 vs. NCBI nr
Match: KAG7023966.1 (Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 496.5 bits (1277), Expect = 1.3e-136
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   KDDSSSLLEHLRHTWSLTLMAWVTPTSNGVGGIKALSRSSHPPPRSAFPFQFRRSELQFQ 60
           KDDSSSLLEHLRHTWSLTLMAWVTPTSNGVGGIKALSRSSHPPPRSAFPFQFRRSELQFQ
Sbjct: 1   KDDSSSLLEHLRHTWSLTLMAWVTPTSNGVGGIKALSRSSHPPPRSAFPFQFRRSELQFQ 60

Query: 61  QFRLIAEKKHMGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSE 120
           QFRLIAEKKHMGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSE
Sbjct: 61  QFRLIAEKKHMGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSE 120

Query: 121 RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP 180
           RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP
Sbjct: 121 RYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP 180

Query: 181 PQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 240
           PQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI
Sbjct: 181 PQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 240

Query: 241 KV 243
           KV
Sbjct: 241 KV 242

[Close]
BLAST of Carg27085 vs. NCBI nr
Match: XP_022961590.1 (trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_022968804.1 trafficking protein particle complex subunit 6B [Cucurbita maxima] >KAG6590416.1 Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 3.6e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 243
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Carg27085 vs. NCBI nr
Match: XP_023545328.1 (trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 1.0e-93
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 243
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Carg27085 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 2.4e-90
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREVSESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQSESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Carg27085 vs. NCBI nr
Match: XP_008450728.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo] >TYK10194.1 trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-90
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 106 RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 165
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 166 QDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVS 225
           QDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLTQMSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 226 ADISNLPACSFVVRIK 242
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 106 RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 165
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 166 QDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVS 225
           QDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLTQMSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 226 ADISNLPACSFVVRIK 242
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.6e-31
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 106 RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 165
           ++E +G++VG  L ER+T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 34  KLENMGFRVGQGLIERFTKDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVL 93

Query: 166 QDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVS 225
           QDN+FR LT++S              G+     A    L F CG++RGALSN+G+   V+
Sbjct: 94  QDNKFRLLTQLSA-------------GKQYLEHAPKF-LAFTCGLVRGALSNIGVKSIVT 153

Query: 226 ADISNLPACSFVVRIK 242
           A++S +PAC F V I+
Sbjct: 154 AEVSVMPACKFQVMIQ 155

[Close]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 106 RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 165
           ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 166 QDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVS 225
           QDN+FR L ++S                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLIQLSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 226 ADISNLPACSFVVRIK 242
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 0 

Query: 107 IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 166
           +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ
Sbjct: 37  LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96

Query: 167 DNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 226
           DN F  L  M   P              +  +     L F CG++ GAL  LG    V+A
Sbjct: 97  DNSFPLLVTMGSGP--------------QYLEEAPKFLAFTCGLLCGALHTLGFQSLVTA 156

Query: 227 DISNLPACSFVVRIK 242
            +++LPAC F V I+
Sbjct: 157 SVASLPACKFQVVIQ 157

[Close]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.7e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 243
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match: A0A6J1HCN4 (trafficking protein particle complex subunit 6B OS=Cucurbita moschata OX=3662 GN=LOC111462123 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.7e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 243
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNESQDNSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match: A0A6J1DP88 (trafficking protein particle complex subunit 6B OS=Momordica charantia OX=3673 GN=LOC111021834 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.4e-90
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           M REVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MVREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQD SA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPSQSESQDTSA 120

Query: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
           DGE+KAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGESKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171

[Close]
BLAST of Carg27085 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-81
Identity = 142/172 (82.56%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130
           MGREV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-PQGESQDNS 190
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  + E+QD S
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPS 120

Query: 191 ADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 242
             GE+KAAQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+K
Sbjct: 121 TPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVK 172

The following BLAST results are available for this feature:
BLAST of Carg27085 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023966.11.3e-136100.00Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma... [more]
XP_022961590.13.6e-94100.00trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_0229688... [more]
XP_023545328.11.0e-9399.42trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo][more]
XP_038878648.12.4e-9098.25trafficking protein particle complex subunit 6B [Benincasa hispida][more]
XP_008450728.15.3e-9097.66PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m... [more]
BLAST of Carg27085 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32L782.6e-3148.53Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6... [more]
Q86SZ22.6e-3148.53Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
F1QMV37.6e-3147.79Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc... [more]
Q9D2891.3e-3047.06Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap... [more]
Q78XR01.2e-2339.26Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap... [more]
BLAST of Carg27085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0Q51.7e-94100.00trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCN41.7e-94100.00trafficking protein particle complex subunit 6B OS=Cucurbita moschata OX=3662 GN... [more]
A0A5D3CG652.6e-9097.66Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. ... [more]
A0A1S3BP902.6e-9097.66trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36... [more]
A0A6J1DP883.4e-9097.08trafficking protein particle complex subunit 6B OS=Momordica charantia OX=3673 G... [more]
BLAST of Carg27085 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05000.11.3e-8182.56Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 81..240
e-value: 4.7E-47
score: 159.5
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 75..242
e-value: 2.5E-60
score: 204.7
NoneNo IPR availablePANTHERPTHR12817:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6A-RELATEDcoord: 71..242
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 71..242
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 76..241
e-value: 3.97776E-83
score: 243.701
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 73..240

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27085-RACarg27085-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030008 TRAPP complex