Carg28279 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28279
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 7149402 .. 7151245 (-)
RNA-Seq ExpressionCarg28279
SyntenyCarg28279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGACATATAAGTCTCTTTTTTACGGTAACCCTTAAACTATCTTCCACCTCTCTTCTTCGCCGGAGTCCTCTCCGTGCGCTCTCTATTTCCCTCCCTTCACTGCGAACCTTCCGGCCACATACTCACCGAGACCATCCAGGCGGCGCGGCACGACGGCGAAAGACAGGCCTGCGCCAGCTCCTTTTTTGCGAGGTTTGCAAGCATCATGATCTCCGAATTGACCTGCCTAGCATTCATCTCCGTTCCTAAAGAGTTTTGCAAATCGAAACTCTGCAGGACCTAAATACAGGTGTTGATGATAATGAGTGAGTTTTTCTTCACTGTATGAGCTAATTGAAGCCGCTTGATTTTAGATTTGGTGGCACCATCTTGATTTTAGTAGAACAAAGGACCTGTTTAGGTGAAGTAAATTTTCATTTTGTTTAGTATAATTTTAATTTCAGTTTTGATTAAGTTAATTTTTTATCATCTGTTAGAATTTATCGATAGTTGTTTACGTTCATTGGTTGTAAAATGTTACGTTCATTCTTGGGGATGAGAAGAACTGCGACCATTATATGATCAAACTGGCTGTATTGATGATCCCAGAGGTACTCATTGAACTTATTCTCTCGAACATTGTCATCTAAATGATCAAGGCTAAGGATCTGAATGGTACAGAAGCTATGATATGTGCTTTATATTGACCATGCTCGGAATTGATTATATTGATATCATATTGTTGTCATGTATTGTACAGTGCAGTTGTTCAGATTGACCTATTATTTGTTGAGGATTGTTGGGAGGGAGTCTCACATTGGCTAATTTAGGGAATTATCATGGGTTTATAAGTAAGGAATACATCTCTACTAGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAACCATGAGAATTTAGGCTCAAAGTGGTCAATATCATATAATTGTGGAGATTCGTGATTTCTAACATTATTCATTTGCCTCTATAGGGATGGGGCTGTTGGGTTTAGGTGATTTGGTGCTCTATCATTATGCTATCTGCTATTTGGAACGGTGTTTTCTTATCAGGAGAACATTTTCTGCCTTGATCTAGACCTTTTTTCATATCTATTGTCAACTACAGTCTATTCATGCCCTCATTCGTATGTATTGCTAACTTTTTTTTTTTTTTTTGTCTATTCCTGATAGGGTTTCTAAAGCGGCGAAAGCTGTATTCAGTCAGATATAGAACTCTAGGGGCCAAAACAATATTTGGTAAAGATCATTGGGTTCGCTGATTTGTGTGTTGTAGTAAATGATACATGAAAATTGACAAAGGGATCAGAGATTACTCGTTTTTCACCGAAATGTCTGCTTAATACATTCCAATTGCTCTGCTACTCACCGGCAAACATAAATTTGACACATGTGAGTCCTCATAAAACAACAACCAAAAGCTCCGTGAGCCCATTCCTTCGTCACCGACGTTAAAGAGGTAAAGGATCCATGTGAGGCCTATTGGCTCTACTTCGAGGAATTACCATGAAAGAGGGATTCAAACACCACTATCCTTCCTACTCATCTCTCATCTACAAGTTGGCCGTTCTCGTAGATTGGAAGCTGTCGAGATGATTCTTGATCACTTCTTTTACAAATAGGACATTCGCATGCAAATATGAGACCAACTCTTTTGTCGCTTTGATTCACATTATGGGAGAAGCTCGCTTAGGTAGAGAAAGGTATTGAGTTTCCATCGAATGCCTTCCTTAATTGTTTTCGTTTGCGCACATCCTGAGATTGTTACTTGCTTAATACATTAGTCTTCACTGTGACAGTTTTCTCTCTAAAGCAAGTAATCTTCCCAGCAGCCTATGATAGGAGCT

mRNA sequence

GGAAGACATATAAGTCTCTTTTTTACGGTAACCCTTAAACTATCTTCCACCTCTCTTCTTCGCCGGAGTCCTCTCCGTGCGCTCTCTATTTCCCTCCCTTCACTGCGAACCTTCCGGCCACATACTCACCGAGACCATCCAGGCGGCGCGGCACGACGGCGAAAGACAGGCCTGCGCCAGCTCCTTTTTTGCGAGGTTTGCAAGCATCATGATCTCCGAATTGACCTGCCTAGCATTCATCTCCGGTTTCTAAAGCGGCGAAAGCTGTATTCAGTCAGATATAGAACTCTAGGGGCCAAAACAATATTTGGTAAAGATCATTGGGTTCGCTGATTTGTGTGTTGTAGTAAATGATACATGAAAATTGACAAAGGGATCAGAGATTACTCGTTTTTCACCGAAATGTCTGCTTAATACATTCCAATTGCTCTGCTACTCACCGGCAAACATAAATTTGACACATGTGAGTCCTCATAAAACAACAACCAAAAGCTCCGTGAGCCCATTCCTTCGTCACCGACGTTAAAGAGGTAAAGGATCCATGTGAGGCCTATTGGCTCTACTTCGAGGAATTACCATGAAAGAGGGATTCAAACACCACTATCCTTCCTACTCATCTCTCATCTACAAGTTGGCCGTTCTCGTAGATTGGAAGCTGTCGAGATGATTCTTGATCACTTCTTTTACAAATAGGACATTCGCATGCAAATATGAGACCAACTCTTTTGTCGCTTTGATTCACATTATGGGAGAAGCTCGCTTAGGTAGAGAAAGGTATTGAGTTTCCATCGAATGCCTTCCTTAATTGTTTTCGTTTGCGCACATCCTGAGATTGTTACTTGCTTAATACATTAGTCTTCACTGTGACAGTTTTCTCTCTAAAGCAAGTAATCTTCCCAGCAGCCTATGATAGGAGCT

Coding sequence (CDS)

GGAAGACATATAAGTCTCTTTTTTACGGTAACCCTTAAACTATCTTCCACCTCTCTTCTTCGCCGGAGTCCTCTCCGTGCGCTCTCTATTTCCCTCCCTTCACTGCGAACCTTCCGGCCACATACTCACCGAGACCATCCAGGCGGCGCGGCACGACGGCGAAAGACAGGCCTGCGCCAGCTCCTTTTTTGCGAGGTTTGCAAGCATCATGATCTCCGAATTGACCTGCCTAGCATTCATCTCCGGTTTCTAAAGCGGCGAAAGCTGTATTCAGTCAGATATAGAACTCTAGGGGCCAAAACAATATTTGGTAAAGATCATTGGGTTCGCTGA

Protein sequence

GRHISLFFTVTLKLSSTSLLRRSPLRALSISLPSLRTFRPHTHRDHPGGAARRRKTGLRQLLFCEVCKHHDLRIDLPSIHLRFLKRRKLYSVRYRTLGAKTIFGKDHWVR
Homology
[Close]
BLAST of Carg28279 vs. NCBI nr
Match: KAG7023937.1 (hypothetical protein SDJN02_14965, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.2 bits (570), Expect = 5.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   GRHISLFFTVTLKLSSTSLLRRSPLRALSISLPSLRTFRPHTHRDHPGGAARRRKTGLRQ 60
           GRHISLFFTVTLKLSSTSLLRRSPLRALSISLPSLRTFRPHTHRDHPGGAARRRKTGLRQ
Sbjct: 1   GRHISLFFTVTLKLSSTSLLRRSPLRALSISLPSLRTFRPHTHRDHPGGAARRRKTGLRQ 60

Query: 61  LLFCEVCKHHDLRIDLPSIHLRFLKRRKLYSVRYRTLGAKTIFGKDHWVR 111
           LLFCEVCKHHDLRIDLPSIHLRFLKRRKLYSVRYRTLGAKTIFGKDHWVR
Sbjct: 61  LLFCEVCKHHDLRIDLPSIHLRFLKRRKLYSVRYRTLGAKTIFGKDHWVR 110

The following BLAST results are available for this feature:
BLAST of Carg28279 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023937.15.6e-55100.00hypothetical protein SDJN02_14965, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg28279 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28279 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28279 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28279-RACarg28279-RAmRNA