Carg02929 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02929
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	replication protein A 32 kDa subunit A-like
Location	Carg_Chr09: 2497501 .. 2502217 (-)
RNA-Seq Expression	Carg02929
Synteny	Carg02929

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATTCTTCACCCGCTTTCCGTTGTTGATTGTTGATCGAGGTGTTAATCACAGGGTTTTAAAGAATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCTATGACTCTTCTTCGGCGAAGGTTAGTCGATGCTATAACTTCTAAATTTCTGTTTGATGAGAGAATGTTTTTGAAATTAAGGGATAGAAATGGTTCTCGAGGTATCAATACTCCTTAAAGTTGTTGGATAGCTTGGATCCGGCGAGAGCAAAAGTGCAAACCTAAATCACTCTTATATCGCCGGAGCGATGATCGAAACGGTGTTAAAAGTGTAGAATCAGGATCAAATTCATTTGTTTCATCCTGTTATTTTCGGCTGTAGACAATTTTTTTCTTGTCGAATTTATGATACTGGATCAAGCACTAGCGGAAACCGTGAATAAGATGGCAATTGATGACTGTTCGTTACGATTTCTACTATTTTCCATTTTCATACGTTTTCATACATTTTGAATTCTTCCATGCAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGCAATCAACGGCGTTGACATTACAAATGTATACTTCCTTGTCTTCTTTCTCACTTTTAAACACTGTTACAGAGTATTTTTTTACAAATAATGACAAGAAATTGCATTTCTGAATCAAACGTATGTTAATGTTATCTGTCAATGTAGTAATACTTTCTTGTTCACTAGAGTTATTCACGTTTGCCATTGATTTTGGGCCTCTTTCCATAAAGCTTTCCATAAACTAAAATCTTAGGTTTCTTTTCTGTGGTTCAGTCGCTAGTGGACTCTTCTACCTTTGACCGAAAAGGAGTATAGGCATTATGTTAGCGGAATGTTGAATATTACAATGCCATATACTGTATTAATCTGAAATCACTGCAATGTGTAAAAAGTGTTAGACCATATATTTTCATATATAGAGTAAATGTTAATGTAAAAGTAACATGTAACGTATTCCTGACTGGCTTCTCCAGATCTGATCGTTTGTGTATGTGTATTTCTTGTAGTATTCGGAAATGGAGTTACATCTCTTTTCTATTTCCATTCTAGAGTTTTTATGTGTTTCCACGCTCCTTCGAGAACCCGAAAAATGAACAATTTTTCTTCGGAACCAAATCCATTAGTATGAAACATTTCCACTAAAAAAATATTCTTGTGATAGGGCCCTTTTTCCAAGGATTTCATAATTGGACATCGAACCCATTTCATATCATGGGAGTTGCGGGTGTATTGTAGTTTTTAGGTTTCAACCGATCCTTGTCTTTTCATCTGATTAGCTCTGCACACAGACTATGAATTAGATCTCTTTGTTGTAAATACTGACATTTTAGTTATTGGAAAAAGGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGGATTGGCTGCAAAAGATGGTATACTGTTGCAGTTGCTACCGTCCTAAACCTTTAAACTCGATCTTTATTCGGGTCGTGTAGCTCATATTACTAAACCATGTGTGTCAAAAAAATTTCAGGGTAAACGACACTTTCGACACCAAGCAAATGGATGAAATACAGTAAGTTCTTGTTTAATTTGAGTTTCTTGTGATGACAAATACTATAGTTGTCTTTATGACTCTTCCTTTGATTTTTCTTTTGGCACAGAGATGGAATGTATATACGGGTGAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGTATGATGTTTGTATTCTCTTCAATCTATTTTCATGCGTTTGGGTACTTCTTTGAAGTTAAATGTTTTACATATTACGCTATCATTCTTTGTGTTTTTTAATTGCATATTGAAACTTGAGGATTGCGAATTGAACAAGTTGATGTAGGTCAATGCCATATATGTATTACTTAACTGTTATAAAAAATAGCAGCAAATATACCACCTTATGTAGGATCTGTTCAATAGGGTCATTGATTCTTGAGTTCTAAAATAAATAGCAGCATAGAGTCTACTTGATTTCTAGGTAGAATACTGAGGAACTGTTGTACAATGTCCTTGAGTTCTGTTTGACGGTTATGGAGAGAGGAACTCGTTATTGGCATCAAGGAACGAAGAGCCTAAGCAGAAATGGGTAGGATCGGTACCAATAGGCCGGTTTTATTCACATCTTACAAACAAGTGAAGCCGACCATTTTATTCATTGTACTCGTAAATTGCAAATTCCACATGCCAGGATAACACAACTTGTTTTCGAAGTGCTTATAACAGATAACCATTACCTTTGTTTATAAGATTGTTGAAGGTCTCGAGGAATGTGTCATAGCAAAGTAATTGTGAGATCCCACTTCGGTTGGAGAGGCAAACAAAGCATTCCTTGTAAGGGTGTGGAAACCTTTTCCTAGTAGATGCGTTTTCAAAACCTTGAAAGCTTGAAAGGAAAAGCTCAAAGAGGAGAATATCTGCTAGCGGTGGGCTTGGATTGTTATAATAAATATTAGATGGGTTTTCTCGAAGTTGATATTTGAAATTCTCAAACTTCTTTTTCAATGGATTTGAGAAATTTTCTGAAATGGCATTAACCTCTCACTTTGCCTTCTTTCATGAAGTAATTATTGGGGTGTTGGAAACCGTCCAATGCACAATTTTCTGTTCCTGTTGTATATTTGACCGATTAAAAAGATGATGAACTTGGTTATATGTTTTGTCAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGGTACTGGTTGCTGGAGCTGACTTGATAGCTGTGCTTCTAACTGTATTATTTTTTATGATTGAAATAGTTATTAATGAATATCAAAATTCTCAATTCATTTGTGCTTAAACTGCTAGAATCTCAATGGAGTTGGATCGACACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTAGTAAGAGTCAAACCACGATTATTGTTGGCAGTGAAATTTTGCACGAAATTAGGTGGTTTATGCGTGAAGTGAACAATATCATATCATTTTCAAGGGTTCTGACGTTGAAAAATTACCACAGTACTTAATTATTCAACTGGGATTCAAATCTAATTTGTTTTTGCAGCCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTGTAAGTTGTCCCAAACCAAAATTTCCTTTTCCTTTCTAGATTATGTTATTTGCTGGCTGGTTACTCTGCATTATCGTATATGAGATTGACTTGAGCTTGACCTTTGTCCGGAAACAAGGTGGTTTTTACATTTAAAGAATTGAATTCCATCCATCAGATGTGACTATGAGTCATACATAGTACTTGTTAACCCTCAATGAATAGCAAACAAGACGTTAGGTCGGTGGTTGACTTTTAGTCACAGGTCACTTCTGATTATTGGTTACATAGACACCCGCACCCAGTTGGCCCTTGGCCCAATAATAAGGGGACAAGGTATGACCTTAGGGTTGTACGGTTCAACTTTCATGTGGGCCACCCCTATTGCAATCTTCCAAAAAAAAAAAAAAAAAATAGTGTCCATACTGACGGTATTGTTGAGGATTGTTGGGAGAGTAGTCCCACGTCGGCTAATAAGAAATTGTTTATGGGTTTATAAGGAACAAATGCATCTTCATTAGAACGATGACTTTTGGGTAAGCTAAAAGCAAAGTTACGAGAGCTTATGTTCGAAGTAGACCATATGTAACGACTATGAAGTTACTTGGAAATATAATTTTAGTTTTATATTTTAATTCTTCTATGGTTGATTATTTAAATTTAGTAATTATAGTTTGAATATATTCTAAAATTGGCCCTTTGCAGTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATGGAGAAAATACTGTATGCCTTCTCCTTCCTCCACCTCCCTTCCTATAATGGTTGCAATTAACTCTTTAATTATTTATTGTTTTTTGTTTTCAGGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCGTAGGATTTTGGAACGGGTAAAGTGCAAACCTATGTCAGTACTGACATGACTATAGGTACTAGAAGCATTATGGGTAAAGTTCAAACTTTTATCCCTTTTTTTTTTTTTACTGCCCTTTCAAAACCTCTAGAATTCAAAGTATATGTTGTTTTGAAGCTTTATTTGTCTAAATACGTTATTTTAGGAGGAAAGTATATGGTCTATCAATTAGTCGATTAATTTTATATCATTGATCGATCAGTTGATTGTCGATCTATAAGCCTCTTGATTCATAATCAAAAGTTAAACAAATCCATTAGTAAATATTCATTATCTCGAACATAAAGATATAACTTTTTTTTACCTTAAGTTATCGAGATGAAAAAATTTCAAAACCCGTGAACCGGTTAGTAAATATATACCTTTTTTGGGGTCAAATTTTGAAATTGAGTGAATTTTATTATTATTATT

mRNA sequence

GCAATTCTTCACCCGCTTTCCGTTGTTGATTGTTGATCGAGGTGTTAATCACAGGGTTTTAAAGAATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCTATGACTCTTCTTCGGCGAAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGCAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGGATTGGCTGCAAAAGATGGGTAAACGACACTTTCGACACCAAGCAAATGGATGAAATACAAGATGGAATGTATATACGGGTGAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGAGTTGGATCGACACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATGGAGAAAATACTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCGTAGGATTTTGGAACGGGTAAAGTGCAAACCTATGTCAGTACTGACATGACTATAGGTACTAGAAGCATTATGGGTAAAGTTCAAACTTTTATCCCTTTTTTTTTTTTTACTGCCCTTTCAAAACCTCTAGAATTCAAAGTATATGTTGTTTTGAAGCTTTATTTGTCTAAATACGTTATTTTAGGAGGAAAGTATATGGTCTATCAATTAGTCGATTAATTTTATATCATTGATCGATCAGTTGATTGTCGATCTATAAGCCTCTTGATTCATAATCAAAAGTTAAACAAATCCATTAGTAAATATTCATTATCTCGAACATAAAGATATAACTTTTTTTTACCTTAAGTTATCGAGATGAAAAAATTTCAAAACCCGTGAACCGGTTAGTAAATATATACCTTTTTTGGGGTCAAATTTTGAAATTGAGTGAATTTTATTATTATTATT

Coding sequence (CDS)

ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCTATGACTCTTCTTCGGCGAAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGCAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGGATTGGCTGCAAAAGATGGGTAAACGACACTTTCGACACCAAGCAAATGGATGAAATACAAGATGGAATGTATATACGGGTGAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGAGTTGGATCGACACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATGGAGAAAATACTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCGTAG

Protein sequence

MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

Homology

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BLAST of Carg02929 vs. NCBI nr
Match: KAG7024504.1 (Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 531.6 bits (1368), Expect = 4.1e-147
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. NCBI nr
Match: KAG6591621.1 (Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531.2 bits (1367), Expect = 5.3e-147
Identity = 270/271 (99.63%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKILNSIRSLEDEGLIYST+DEFHFKSAA
Sbjct: 241 PMEKILNSIRSLEDEGLIYSTVDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. NCBI nr
Match: XP_022936562.1 (replication protein A 32 kDa subunit A-like [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFTSSQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. NCBI nr
Match: XP_022976184.1 (replication protein A 32 kDa subunit A-like [Cucurbita maxima])

HSP 1 Score: 520.8 bits (1340), Expect = 7.2e-144
Identity = 269/273 (98.53%), Postives = 269/273 (98.53%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFT SQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI
Sbjct: 1   MFSSSQFDSGSGFTFSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTAS--SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL 240
           PMQNGSSGYQTAS  SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL
Sbjct: 181 PMQNGSSGYQTASSVSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL 240

Query: 241 KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 273

[Close]

BLAST of Carg02929 vs. NCBI nr
Match: XP_023535200.1 (replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 265/271 (97.79%), Postives = 266/271 (98.15%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFT SQT DSSSAKNR+TPGLVPATVKQISEASHSGEEKANFAINGVDI
Sbjct: 1   MFSSSQFDSGSGFTFSQTNDSSSAKNRDTPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEI DGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEILDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQF SSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFLSSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           PMQNGSSGY TASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PMQNGSSGYPTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. ExPASy Swiss-Prot
Match: Q9ZQ19 (Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A PE=1 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-68
Identity = 140/281 (49.82%), Postives = 193/281 (68.68%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTS--------SQTYDSSS--AKNRETPGLVPATVKQISEASHSGEEK 60
           MFSSSQF+  SGF+         SQ Y+SSS  AKNR+  GLVP TVKQI+E   S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFAINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQ 120
           +   ING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGST 180
           DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 QFQSSDSIVKTPMQNGSSGYQTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKER 240
           Q       V T  Q GS+  Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++
Sbjct: 181 Q------SVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQ 240

Query: 241 GIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK 269
           GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 GIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of Carg02929 vs. ExPASy Swiss-Prot
Match: Q8LFJ8 (Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-47
Identity = 109/279 (39.07%), Postives = 169/279 (60.57%), Query Frame = 0


Query: 2   FSSSQFDSGSGFTSSQT-----YDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAIN 61
           F  +   +G GF  SQ        SSS KNR+   L+P T+KQ+S AS +GE  +NF+I+
Sbjct: 6   FDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSID 65

Query: 62  GVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRV 121
           GVDI  V IVG++S    R T + F+VDDGTG + C RW +   +T++M+ ++ GMY+R+
Sbjct: 66  GVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRL 125

Query: 122 NGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQS 181
           +GHLKIFQ  + +  FSVRP+T+F+EI  HF EC++ H+ N+KL+         + + Q 
Sbjct: 126 HGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQM 185

Query: 182 SDSIVKTPMQNGSSGYQTA-SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRD 241
             S + TP    +  YQT  S+  P++ +  D        +L+YL  P  +  E G+H D
Sbjct: 186 PYSTMPTP----AKPYQTGPSNQFPNQFN--DSMHGVKQTVLNYLNQPMHIVSEAGVHCD 245

Query: 242 ELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
            ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Sbjct: 246 IIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTA 276

[Close]

BLAST of Carg02929 vs. ExPASy Swiss-Prot
Match: Q6K9U2 (Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2A PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.5e-47
Identity = 119/282 (42.20%), Postives = 170/282 (60.28%), Query Frame = 0


Query: 1   MFSSSQFD--SGSGFTSSQTYDSSS---AKNRETPGLVPATVKQISEASHS---GEEKAN 60
           M S SQ D  S S FTSSQ   + S   +K+R     +P TVKQISEA  S   GE+ A 
Sbjct: 1   MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60

Query: 61  FAINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGM 120
           F ++GV+  NV +VG VS K ERNTD++F +DDGTGR+   RWVND  D+ +   +Q+GM
Sbjct: 61  FVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120

Query: 121 YIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQ 180
           Y+ V G LK  Q  K+  AF++RP+T+++E+T HFI+C+  HL N+K Q    +GS    
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQ----IGSP--A 180

Query: 181 SSDSIVKTPMQNGSSGYQTASSVLPSEQHTVDV----KKNCDDLILDYLQLPSSVAKERG 240
            + S + +   NG S   T +SV  +    + V    K + +  +L+  + P++V  E G
Sbjct: 181 KTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHG 240

Query: 241 IHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA 271
           +H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Sbjct: 241 VHIDEIVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSA 276

[Close]

BLAST of Carg02929 vs. ExPASy Swiss-Prot
Match: Q6H7J5 (Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2B PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-44
Identity = 98/276 (35.51%), Postives = 163/276 (59.06%), Query Frame = 0


Query: 3   SSSQFDSGSGFTSSQTYDSSSA---------KNRETPGLVPATVKQISEASHSGEEKANF 62
           ++S    G GF  SQ  +++           K+R    L+P TVKQI +AS + ++K+NF
Sbjct: 20  NASSLFGGGGFMPSQATNAAEGTSGGGGGFPKSRNAQALLPLTVKQIMDASQTNDDKSNF 79

Query: 63  AINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMY 122
           A+NG++++ V +VG++  K +R TD++F +DDGTGR+   RW ND+ DTK+M +IQ+G Y
Sbjct: 80  AVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKEMADIQNGDY 139

Query: 123 IRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQS 182
           + VNG LK FQ  +Q+ A+SVR ITNF+++T HF+ C+H HL  ++ ++     +     
Sbjct: 140 VIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATGTP 199

Query: 183 SDSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDE 242
           + ++ +  M    S     +S   + Q+T     N  DL+L+    P+ +  + G+  D 
Sbjct: 200 NQTMPRDSMAYNQSPLTNQASTFSAPQNT-GTGTNMIDLVLNVFHDPAVMNDDHGVGVDY 259

Query: 243 LSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS 270
           +S++L +P E +   I    D G +Y+TID+ H+KS
Sbjct: 260 VSRRLNLPEETVGKIIIDQVDLGHLYATIDDHHYKS 294

[Close]

BLAST of Carg02929 vs. ExPASy Swiss-Prot
Match: Q5Z8L1 (Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2C PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.0e-25
Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 9   SGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEA-----SHSGEEKANFAINGVDITNV 68
           S +G  ++     S  ++    G VPATV  IS +     +  G     F+I+GV+ TNV
Sbjct: 27  SAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISRSFAAALAADGGGDPVFSIDGVETTNV 86

Query: 69  TIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIF 128
            ++G+V     R+TD+ F +DD TG+I   RW+ D  DT+    IQ+G+Y++V  +L  F
Sbjct: 87  RVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWITDQSDTRDTSYIQEGVYVKVQVNLMGF 146

Query: 129 QSNKQIFAFSVRPITNFDEITFHFIECIHEHLRN--SKLQ 162
           Q+ KQ  A S+RPI NF+E+  HFIEC+H HL +  SK+Q
Sbjct: 147 QAKKQGLARSIRPINNFNEVVLHFIECMHVHLESVQSKMQ 186

[Close]

BLAST of Carg02929 vs. ExPASy TrEMBL
Match: A0A6J1F8S8 (replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC111443128 PE=3 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.3e-146
Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFTSSQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. ExPASy TrEMBL
Match: A0A6J1IMU1 (replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC111476648 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.5e-144
Identity = 269/273 (98.53%), Postives = 269/273 (98.53%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFT SQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI
Sbjct: 1   MFSSSQFDSGSGFTFSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180

Query: 181 PMQNGSSGYQTAS--SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL 240
           PMQNGSSGYQTAS  SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL
Sbjct: 181 PMQNGSSGYQTASSVSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQL 240

Query: 241 KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 KIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 273

[Close]

BLAST of Carg02929 vs. ExPASy TrEMBL
Match: A0A1S3CR64 (replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503766 PE=3 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 7.3e-134
Identity = 243/271 (89.67%), Postives = 259/271 (95.57%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSS+QFDSGSGFTSSQT DSSSAK+RE+PGLVP TVKQISEASHSGEEKANF IN VDI
Sbjct: 1   MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDTKQM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           P+QNGSSGY T SS +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKI
Sbjct: 181 PVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. ExPASy TrEMBL
Match: A0A0A0LEG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.4e-132
Identity = 239/271 (88.19%), Postives = 258/271 (95.20%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSS+QFDS SGFTSSQT DSSSAK+RE+PGL+P TVKQISEASHSGEEKANF INGVDI
Sbjct: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM+EIQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           K+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKT
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKT 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
           P+QNGS+GY T SS +PSEQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLK+
Sbjct: 181 PVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKL 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of Carg02929 vs. ExPASy TrEMBL
Match: A0A6J1CUB8 (replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC111014622 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 4.3e-126
Identity = 238/271 (87.82%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120

Query: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKT 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS V  
Sbjct: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVNA 180

Query: 181 PMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKI 240
            +Q+GSSGYQTASS L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKI
Sbjct: 181 LVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKI 240

Query: 241 PMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
           P+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 PLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 270

[Close]

BLAST of Carg02929 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-69
Identity = 140/281 (49.82%), Postives = 193/281 (68.68%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTS--------SQTYDSSS--AKNRETPGLVPATVKQISEASHSGEEK 60
           MFSSSQF+  SGF+         SQ Y+SSS  AKNR+  GLVP TVKQI+E   S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFAINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQ 120
           +   ING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGST 180
           DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 QFQSSDSIVKTPMQNGSSGYQTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKER 240
           Q       V T  Q GS+  Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++
Sbjct: 181 Q------SVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQ 240

Query: 241 GIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK 269
           GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 GIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of Carg02929 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-69
Identity = 140/281 (49.82%), Postives = 193/281 (68.68%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTS--------SQTYDSSS--AKNRETPGLVPATVKQISEASHSGEEK 60
           MFSSSQF+  SGF+         SQ Y+SSS  AKNR+  GLVP TVKQI+E   S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFAINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQ 120
           +   ING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGST 180
           DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 QFQSSDSIVKTPMQNGSSGYQTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKER 240
           Q       V T  Q GS+  Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++
Sbjct: 181 Q------SVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQ 240

Query: 241 GIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK 269
           GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 GIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of Carg02929 vs. TAIR 10
Match: AT3G02920.1 (Replication protein A, subunit RPA32 )

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-48
Identity = 109/279 (39.07%), Postives = 169/279 (60.57%), Query Frame = 0


Query: 2   FSSSQFDSGSGFTSSQT-----YDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAIN 61
           F  +   +G GF  SQ        SSS KNR+   L+P T+KQ+S AS +GE  +NF+I+
Sbjct: 6   FDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSID 65

Query: 62  GVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRV 121
           GVDI  V IVG++S    R T + F+VDDGTG + C RW +   +T++M+ ++ GMY+R+
Sbjct: 66  GVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRL 125

Query: 122 NGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQS 181
           +GHLKIFQ  + +  FSVRP+T+F+EI  HF EC++ H+ N+KL+         + + Q 
Sbjct: 126 HGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQM 185

Query: 182 SDSIVKTPMQNGSSGYQTA-SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRD 241
             S + TP    +  YQT  S+  P++ +  D        +L+YL  P  +  E G+H D
Sbjct: 186 PYSTMPTP----AKPYQTGPSNQFPNQFN--DSMHGVKQTVLNYLNQPMHIVSEAGVHCD 245

Query: 242 ELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 272
            ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Sbjct: 246 IIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTA 276

[Close]

BLAST of Carg02929 vs. TAIR 10
Match: AT3G02920.2 (Replication protein A, subunit RPA32 )

HSP 1 Score: 189.1 bits (479), Expect = 4.6e-48
Identity = 101/254 (39.76%), Postives = 160/254 (62.99%), Query Frame = 0


Query: 22  SSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDITNVTIVGKVSEKAERNTDITF 81
           SS +NR+   L+P T+KQ+S AS +GE  +NF+I+GVDI  V IVG++S    R T + F
Sbjct: 51  SSIRNRDVRTLLPLTLKQLSSASTTGE--SNFSIDGVDIKTVVIVGRISRMENRITQVDF 110

Query: 82  IVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFD 141
           +VDDGTG + C RW +   +T++M+ ++ GMY+R++GHLKIFQ  + +  FSVRP+T+F+
Sbjct: 111 VVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFN 170

Query: 142 EITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-SSVLP 201
           EI  HF EC++ H+ N+KL+         + + Q   S + TP    +  YQT  S+  P
Sbjct: 171 EIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPTP----AKPYQTGPSNQFP 230

Query: 202 SEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGL 261
           ++ +  D        +L+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G 
Sbjct: 231 NQFN--DSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGC 290

Query: 262 IYSTIDEFHFKSAA 272
           IYST+DE  FKS A
Sbjct: 291 IYSTLDETCFKSTA 296

The following BLAST results are available for this feature:

BLAST of Carg02929 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024504.1	4.1e-147	100.00	Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6591621.1	5.3e-147	99.63	Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022936562.1	1.3e-145	99.26	replication protein A 32 kDa subunit A-like [Cucurbita moschata]	[more]
XP_022976184.1	7.2e-144	98.53	replication protein A 32 kDa subunit A-like [Cucurbita maxima]	[more]
XP_023535200.1	1.0e-142	97.79	replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02929 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQ19	3.9e-68	49.82	Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A ...	[more]
Q8LFJ8	2.9e-47	39.07	Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B ...	[more]
Q6K9U2	6.5e-47	42.20	Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6H7J5	2.3e-44	35.51	Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5Z8L1	7.0e-25	40.00	Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Carg02929 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8S8	6.3e-146	99.26	replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IMU1	3.5e-144	98.53	replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CR64	7.3e-134	89.67	replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A0A0LEG7	1.4e-132	88.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1	[more]
A0A6J1CUB8	4.3e-126	87.82	replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Carg02929 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24490.1	2.8e-69	49.82	replicon protein A2	[more]
AT2G24490.2	2.8e-69	49.82	replicon protein A2	[more]
AT3G02920.1	2.1e-48	39.07	Replication protein A, subunit RPA32	[more]
AT3G02920.2	4.6e-48	39.76	Replication protein A, subunit RPA32	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014646	Replication factor A protein 2	PIRSF	PIRSF036949	RPA32	coord: 1..271 e-value: 4.7E-72 score: 240.3
IPR014892	Replication protein A, C-terminal	PFAM	PF08784	RPA_C	coord: 154..264 e-value: 9.3E-15 score: 55.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 203..271 e-value: 3.8E-16 score: 60.5
None	No IPR available	GENE3D	2.40.50.140		coord: 29..160 e-value: 6.8E-41 score: 141.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR13989:SF34	REPLICATION PROTEIN A 32 KDA SUBUNIT A	coord: 1..270
None	No IPR available	CDD	cd04478	RPA2_DBD_D	coord: 62..155 e-value: 8.87594E-40 score: 131.568
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 63..136 e-value: 8.4E-10 score: 38.5
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 1..270
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 206..269
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 32..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02929-RA	Carg02929-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding