Carg02828 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02828
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1914010 .. 1914313 (+)
RNA-Seq ExpressionCarg02828
SyntenyCarg02828
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTTGTCGTGATCAACGCGTATTCTCTTCAAGAAATCACAACCCTGAATGTTTCTGCAGTGGTGCAGGCAGCACCAGAATTTCGTCACAGGGAACGTGACGTTAAGCTGGTCGCTAAGGCTCAAATGGCAGGACGATATGATATTGAAATATCGAAAACGTCGCGGATTGGTATCTTGAAAGATGAAGATGGGTACTACAAAATGGTCATGTGTATGTCAAAATTTAAAACTTTATACAAGTTTATTAAAGGCCTCGCTCATCAAGAGAATTGTTCATTGCAGACACGAGGGTAGTTGA

mRNA sequence

ATGACTTTTGTCGTGATCAACGCGTATTCTCTTCAAGAAATCACAACCCTGAATGTTTCTGCAGTGGTGCAGGCAGCACCAGAATTTCGTCACAGGGAACGTGACGTTAAGCTGGTCGCTAAGGCTCAAATGGCAGGACGATATGATATTGAAATATCGAAAACGTCGCGGATTGGTATCTTGAAAGATGAAGATGGGTACTACAAAATGGCCTCGCTCATCAAGAGAATTGTTCATTGCAGACACGAGGGTAGTTGA

Coding sequence (CDS)

ATGACTTTTGTCGTGATCAACGCGTATTCTCTTCAAGAAATCACAACCCTGAATGTTTCTGCAGTGGTGCAGGCAGCACCAGAATTTCGTCACAGGGAACGTGACGTTAAGCTGGTCGCTAAGGCTCAAATGGCAGGACGATATGATATTGAAATATCGAAAACGTCGCGGATTGGTATCTTGAAAGATGAAGATGGGTACTACAAAATGGCCTCGCTCATCAAGAGAATTGTTCATTGCAGACACGAGGGTAGTTGA

Protein sequence

MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGILKDEDGYYKMASLIKRIVHCRHEGS
Homology
[Close]
BLAST of Carg02828 vs. NCBI nr
Match: KAG7024407.1 (hypothetical protein SDJN02_13221, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI 60
          MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI
Sbjct: 1  MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI 60

Query: 61 LKDEDGYYKMASLIKRIVHCRHEGS 86
          LKDEDGYYKMASLIKRIVHCRHEGS
Sbjct: 61 LKDEDGYYKMASLIKRIVHCRHEGS 85

[Close]
BLAST of Carg02828 vs. NCBI nr
Match: KAG6591520.1 (L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-28
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI 60
          MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI
Sbjct: 1  MTFVVINAYSLQEITTLNVSAVVQAAPEFRHRERDVKLVAKAQMAGRYDIEISKTSRIGI 60

Query: 61 LKDEDGYYKMA 72
          LKDEDGYYKM+
Sbjct: 61 LKDEDGYYKMS 71

The following BLAST results are available for this feature:
BLAST of Carg02828 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024407.11.4e-37100.00hypothetical protein SDJN02_13221, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591520.12.0e-2898.59L10-interacting MYB domain-containing protein, partial [Cucurbita argyrosperma s... [more]
BLAST of Carg02828 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02828 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02828 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02828-RACarg02828-RAmRNA