Carg05013-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05013-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Serine/threonine-protein kinase pakD isoform X1
Location	Carg_Chr08: 1028008 .. 1028580 (-)
Sequence length	573
RNA-Seq Expression	Carg05013-RA
Synteny	Carg05013-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTATGCATGATATGAAATGGGTACTCCTCCACAGGAAGCCATGGTATCAAAGAGCAATGGAAATAGTAGGAACCCAATGGAGAACAACACCTTCAAAACCAAGAGATCAATACCCAATTCCATCACCAAATGGAGCATTCAATTCCAACAACAACAACAACAATAAACACAACAAAATGAGAAAATGCACTTCTCTCAAGATAGCAACTTCCTTCACAAGAGTATGTCTTTGTGCACCCATCTCTTCTTACAATGAAATCTTCCAACAAGCTGATATCCCACCAAGGAGAAGCCATAGCTATCCAAGATCCAAGCCTTTTCCTACTACTACTACTAATAACATCGTTCTTCCAACTCCTCGACTTAGCGGTGAAAATAGTCGACGGGTTTTCCGGGGAAAGTCCCTCACCGACGACGTTTTGATGCGGAGATTCGTCGTGGAAGAAGAGGCTATGATGCAAGTTAGGAGAAGAAACCAAATGGAAGTTATAAGGAAGAGGAATTTGATGAGAAGGAAGAAGCTTGGTCCAAGCCCTCTTAGCAAAATGGTTATAGCTGAGGAATAA

mRNA sequence

ATGAGTATTATGCATGATATGAAATGGGTACTCCTCCACAGGAAGCCATGGTATCAAAGAGCAATGGAAATAGTAGGAACCCAATGGAGAACAACACCTTCAAAACCAAGAGATCAATACCCAATTCCATCACCAAATGGAGCATTCAATTCCAACAACAACAACAACAATAAACACAACAAAATGAGAAAATGCACTTCTCTCAAGATAGCAACTTCCTTCACAAGAGTATGTCTTTGTGCACCCATCTCTTCTTACAATGAAATCTTCCAACAAGCTGATATCCCACCAAGGAGAAGCCATAGCTATCCAAGATCCAAGCCTTTTCCTACTACTACTACTAATAACATCGTTCTTCCAACTCCTCGACTTAGCGGTGAAAATAGTCGACGGGTTTTCCGGGGAAAGTCCCTCACCGACGACGTTTTGATGCGGAGATTCGTCGTGGAAGAAGAGGCTATGATGCAAGTTAGGAGAAGAAACCAAATGGAAGTTATAAGGAAGAGGAATTTGATGAGAAGGAAGAAGCTTGGTCCAAGCCCTCTTAGCAAAATGGTTATAGCTGAGGAATAA

Coding sequence (CDS)

ATGAGTATTATGCATGATATGAAATGGGTACTCCTCCACAGGAAGCCATGGTATCAAAGAGCAATGGAAATAGTAGGAACCCAATGGAGAACAACACCTTCAAAACCAAGAGATCAATACCCAATTCCATCACCAAATGGAGCATTCAATTCCAACAACAACAACAACAATAAACACAACAAAATGAGAAAATGCACTTCTCTCAAGATAGCAACTTCCTTCACAAGAGTATGTCTTTGTGCACCCATCTCTTCTTACAATGAAATCTTCCAACAAGCTGATATCCCACCAAGGAGAAGCCATAGCTATCCAAGATCCAAGCCTTTTCCTACTACTACTACTAATAACATCGTTCTTCCAACTCCTCGACTTAGCGGTGAAAATAGTCGACGGGTTTTCCGGGGAAAGTCCCTCACCGACGACGTTTTGATGCGGAGATTCGTCGTGGAAGAAGAGGCTATGATGCAAGTTAGGAGAAGAAACCAAATGGAAGTTATAAGGAAGAGGAATTTGATGAGAAGGAAGAAGCTTGGTCCAAGCCCTCTTAGCAAAATGGTTATAGCTGAGGAATAA

Protein sequence

MSIMHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE

Homology

[Close]

BLAST of Carg05013-RA vs. NCBI nr
Match: KAG7025383.1 (hypothetical protein SDJN02_11878, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.9 bits (977), Expect = 6.2e-102
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSIMHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHN 60
           MSIMHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHN
Sbjct: 1   MSIMHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHN 60

Query: 61  KMRKCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLP 120
           KMRKCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLP
Sbjct: 61  KMRKCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLP 120

Query: 121 TPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPS 180
           TPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPS
Sbjct: 121 TPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPS 180

Query: 181 PLSKMVIAEE 191
           PLSKMVIAEE
Sbjct: 181 PLSKMVIAEE 190

[Close]

BLAST of Carg05013-RA vs. NCBI nr
Match: KAG6592971.1 (hypothetical protein SDJN03_12447, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.0 bits (920), Expect = 2.5e-95
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 4   MHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMR 63
           MHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNS NNNNNKHNKMR
Sbjct: 1   MHDMKWVLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNS-NNNNNKHNKMR 60

Query: 64  KCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPR 123
           KCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFP  TT+NIVLPTPR
Sbjct: 61  KCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFP--TTSNIVLPTPR 120

Query: 124 LSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLS 183
           LSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLS
Sbjct: 121 LSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLS 180

Query: 184 KMVIAEE 191
           KMVIAEE
Sbjct: 181 KMVIAEE 184

[Close]

BLAST of Carg05013-RA vs. NCBI nr
Match: XP_023004121.1 (uncharacterized protein LOC111497548 [Cucurbita maxima])

HSP 1 Score: 335.1 bits (858), Expect = 3.9e-88
Identity = 171/177 (96.61%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATS 73
           RKPWYQRAMEIVGTQWRTT SK RDQYPIPSPNGAFNS  N+NNKHNKMRKCTSLKIATS
Sbjct: 10  RKPWYQRAMEIVGTQWRTTSSKSRDQYPIPSPNGAFNS--NSNNKHNKMRKCTSLKIATS 69

Query: 74  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 133
           FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTP+LSGENSRRVF
Sbjct: 70  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPQLSGENSRRVF 129

Query: 134 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 191
           RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE
Sbjct: 130 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 184

[Close]

BLAST of Carg05013-RA vs. NCBI nr
Match: XP_022960213.1 (uncharacterized protein LOC111461019 [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 8.7e-88
Identity = 171/177 (96.61%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATS 73
           RKPWYQRAMEIVGTQWRTT SKPRDQYPIPSPNGAFNSNNN     NKMRKCTSLKIATS
Sbjct: 10  RKPWYQRAMEIVGTQWRTTSSKPRDQYPIPSPNGAFNSNNN-----NKMRKCTSLKIATS 69

Query: 74  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 133
           FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF
Sbjct: 70  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 129

Query: 134 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 191
           RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE
Sbjct: 130 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 181

[Close]

BLAST of Carg05013-RA vs. NCBI nr
Match: XP_023515076.1 (uncharacterized protein LOC111779211 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 5.3e-85
Identity = 168/177 (94.92%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATS 73
           RKPWYQRAMEIVGTQWRTT SK RDQYPIPSPNGA NS  NNNNKHNKMRKCTSLKIATS
Sbjct: 10  RKPWYQRAMEIVGTQWRTTSSKSRDQYPIPSPNGALNS--NNNNKHNKMRKCTSLKIATS 69

Query: 74  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 133
           FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFP  TT+NIVLPTPRLSGENSRRVF
Sbjct: 70  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFP--TTSNIVLPTPRLSGENSRRVF 129

Query: 134 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 191
           RGKSLTDDVLMRRFVVEEEAMMQVRRRNQM+VIRKRNLMRRKKLGPSPLSKMVIAEE
Sbjct: 130 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMDVIRKRNLMRRKKLGPSPLSKMVIAEE 182

[Close]

BLAST of Carg05013-RA vs. ExPASy TrEMBL
Match: A0A6J1KR77 (uncharacterized protein LOC111497548 OS=Cucurbita maxima OX=3661 GN=LOC111497548 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.9e-88
Identity = 171/177 (96.61%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATS 73
           RKPWYQRAMEIVGTQWRTT SK RDQYPIPSPNGAFNS  N+NNKHNKMRKCTSLKIATS
Sbjct: 10  RKPWYQRAMEIVGTQWRTTSSKSRDQYPIPSPNGAFNS--NSNNKHNKMRKCTSLKIATS 69

Query: 74  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 133
           FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTP+LSGENSRRVF
Sbjct: 70  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPQLSGENSRRVF 129

Query: 134 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 191
           RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE
Sbjct: 130 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 184

[Close]

BLAST of Carg05013-RA vs. ExPASy TrEMBL
Match: A0A6J1H871 (uncharacterized protein LOC111461019 OS=Cucurbita moschata OX=3662 GN=LOC111461019 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.2e-88
Identity = 171/177 (96.61%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNSNNNNNNKHNKMRKCTSLKIATS 73
           RKPWYQRAMEIVGTQWRTT SKPRDQYPIPSPNGAFNSNNN     NKMRKCTSLKIATS
Sbjct: 10  RKPWYQRAMEIVGTQWRTTSSKPRDQYPIPSPNGAFNSNNN-----NKMRKCTSLKIATS 69

Query: 74  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 133
           FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF
Sbjct: 70  FTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVF 129

Query: 134 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 191
           RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE
Sbjct: 130 RGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRKKLGPSPLSKMVIAEE 181

[Close]

BLAST of Carg05013-RA vs. ExPASy TrEMBL
Match: A0A0A0KBW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087190 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.2e-72
Identity = 154/202 (76.24%), Postives = 167/202 (82.67%), Query Frame = 0


Query: 10  VLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNS------NNNNNNKHNKMR 69
           ++  RKPWYQRAMEIVGTQW+TT SK R +  I + NGAFNS      NNNN++K+NKMR
Sbjct: 1   MVFRRKPWYQRAMEIVGTQWKTTSSKAR-EITIATANGAFNSKANNGNNNNNSSKYNKMR 60

Query: 70  KCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNN------- 129
           KCTSLKIATSFTRVCLCAPISSYNEIFQQA+IPPRRSHSYPRSKPFPT   NN       
Sbjct: 61  KCTSLKIATSFTRVCLCAPISSYNEIFQQAEIPPRRSHSYPRSKPFPTNNNNNNGNNTTN 120

Query: 130 -------IVLPTPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKR 189
                  ++LP+ RLSGE+SRR FRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKR
Sbjct: 121 HIITHERVLLPSARLSGESSRRFFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKR 180

Query: 190 NLM-RRKKLGPSPLSKMVIAEE 191
           NLM RRKKLGPSPLSKMVIAEE
Sbjct: 181 NLMRRRKKLGPSPLSKMVIAEE 201

[Close]

BLAST of Carg05013-RA vs. ExPASy TrEMBL
Match: A0A5D3DLW3 (Serine/threonine-protein kinase pakD isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001260 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.0e-70
Identity = 153/197 (77.66%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 10  VLLHRKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNS---NNNNNNKHNKMRKCT 69
           ++  RKPWYQRAMEIVGTQW+T+ SK R +  I +PNG FNS   N N NN +NKMRKCT
Sbjct: 1   MVFSRKPWYQRAMEIVGTQWKTS-SKSR-EITITTPNGTFNSKANNGNKNNNNNKMRKCT 60

Query: 70  SLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNN---------- 129
           SLKIATSFTRVCLCAPISSYNEIFQQA+IPPRRSHSYPRSKPFPT + NN          
Sbjct: 61  SLKIATSFTRVCLCAPISSYNEIFQQAEIPPRRSHSYPRSKPFPTNSNNNNGNNNHIITH 120

Query: 130 --IVLPTPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLM-R 189
             I+LP+ RLSGE+SRR FRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLM R
Sbjct: 121 ERILLPSARLSGESSRRFFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRR 180

Query: 190 RKKLGPSPLSKMVIAEE 191
           RKKLGPSPLSKMVIAEE
Sbjct: 181 RKKLGPSPLSKMVIAEE 195

[Close]

BLAST of Carg05013-RA vs. ExPASy TrEMBL
Match: A0A1S3CBM1 (serine/threonine-protein kinase pakD isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498954 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 153/193 (79.27%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 14  RKPWYQRAMEIVGTQWRTTPSKPRDQYPIPSPNGAFNS---NNNNNNKHNKMRKCTSLKI 73
           RKPWYQRAMEIVGTQW+T+ SK R +  I +PNG FNS   N N NN +NKMRKCTSLKI
Sbjct: 12  RKPWYQRAMEIVGTQWKTS-SKSR-EITITTPNGTFNSKANNGNKNNNNNKMRKCTSLKI 71

Query: 74  ATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNN------------IV 133
           ATSFTRVCLCAPISSYNEIFQQA+IPPRRSHSYPRSKPFPT + NN            I+
Sbjct: 72  ATSFTRVCLCAPISSYNEIFQQAEIPPRRSHSYPRSKPFPTNSNNNNGNNNHIITHERIL 131

Query: 134 LPTPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLM-RRKKL 191
           LP+ RLSGE+SRR FRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLM RRKKL
Sbjct: 132 LPSARLSGESSRRFFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMEVIRKRNLMRRRKKL 191

[Close]

BLAST of Carg05013-RA vs. TAIR 10
Match: AT3G59680.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-47
Identity = 108/194 (55.67%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 6   DMKWVLLHRKPWYQRAMEIV--GTQWRTTPSKPRDQYP---IPSPNGAFNSNNNNNNK-H 65
           D+K V+ +RKPWYQRAM +    T WRT P     Q P    PS N + NS ++N+N+ +
Sbjct: 5   DIKKVMANRKPWYQRAMAVARFATNWRTIPKSSSQQQPENFRPSRNPSVNSKSSNHNQIY 64

Query: 66  NKMRKCTSLKI-ATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIV 125
           +++RKC+SLK+ A SFTRVCLCAPI  Y+++F +  +PPRRS SYP SKP P  T   + 
Sbjct: 65  HQLRKCSSLKVAANSFTRVCLCAPIGPYDDVF-RIHVPPRRSSSYPPSKPLPMETA--VA 124

Query: 126 LPTPRLSGENSRRVFRGKSLTDDVLMRRFVV-EEEAMMQVRRRNQMEVIRKRNLMRR-KK 185
           + T R+S ++ RR+FRGKSL ++ LMRRFVV EEEA+M+ R+R+QME++RKRN MRR KK
Sbjct: 125 VATARMSVDSGRRIFRGKSLRENALMRRFVVAEEEAIMENRKRDQMEIVRKRNQMRRKKK 184

Query: 186 LGPSPLSKMVIAEE 191
           LGPSPLS+MVIAE+
Sbjct: 185 LGPSPLSRMVIAED 195

[Close]

BLAST of Carg05013-RA vs. TAIR 10
Match: AT3G59680.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 181.8 bits (460), Expect = 5.2e-46
Identity = 105/186 (56.45%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 14  RKPWYQRAMEIV--GTQWRTTPSKPRDQYP---IPSPNGAFNSNNNNNNK-HNKMRKCTS 73
           RKPWYQRAM +    T WRT P     Q P    PS N + NS ++N+N+ ++++RKC+S
Sbjct: 41  RKPWYQRAMAVARFATNWRTIPKSSSQQQPENFRPSRNPSVNSKSSNHNQIYHQLRKCSS 100

Query: 74  LKI-ATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSG 133
           LK+ A SFTRVCLCAPI  Y+++F +  +PPRRS SYP SKP P  T   + + T R+S 
Sbjct: 101 LKVAANSFTRVCLCAPIGPYDDVF-RIHVPPRRSSSYPPSKPLPMETA--VAVATARMSV 160

Query: 134 ENSRRVFRGKSLTDDVLMRRFVV-EEEAMMQVRRRNQMEVIRKRNLMRR-KKLGPSPLSK 191
           ++ RR+FRGKSL ++ LMRRFVV EEEA+M+ R+R+QME++RKRN MRR KKLGPSPLS+
Sbjct: 161 DSGRRIFRGKSLRENALMRRFVVAEEEAIMENRKRDQMEIVRKRNQMRRKKKLGPSPLSR 220

The following BLAST results are available for this feature:

BLAST of Carg05013-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025383.1	6.2e-102	100.00	hypothetical protein SDJN02_11878, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6592971.1	2.5e-95	97.86	hypothetical protein SDJN03_12447, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023004121.1	3.9e-88	96.61	uncharacterized protein LOC111497548 [Cucurbita maxima]	[more]
XP_022960213.1	8.7e-88	96.61	uncharacterized protein LOC111461019 [Cucurbita moschata]	[more]
XP_023515076.1	5.3e-85	94.92	uncharacterized protein LOC111779211 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05013-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05013-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KR77	1.9e-88	96.61	uncharacterized protein LOC111497548 OS=Cucurbita maxima OX=3661 GN=LOC111497548...	[more]
A0A6J1H871	4.2e-88	96.61	uncharacterized protein LOC111461019 OS=Cucurbita moschata OX=3662 GN=LOC1114610...	[more]
A0A0A0KBW5	4.2e-72	76.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087190 PE=4 SV=1	[more]
A0A5D3DLW3	1.0e-70	77.66	Serine/threonine-protein kinase pakD isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CBM1	1.4e-70	79.27	serine/threonine-protein kinase pakD isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg05013-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59680.1	1.2e-47	55.67	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac...	[more]
AT3G59680.2	5.2e-46	56.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..123
None	No IPR available	PANTHER	PTHR36772	SERINE/THREONINE-KINASE	coord: 3..190

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05013	Carg05013	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05013-RA:1	Carg05013-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05013-RA:cds	Carg05013-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05013-RA	Carg05013-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity