Carg16078 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16078
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 2023449 .. 2024091 (+)
RNA-Seq ExpressionCarg16078
SyntenyCarg16078
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCTGTGCCTATTTACCTACTGCATTCTTCTGAAGATGCTAGGTGGTCTACAAATCTTCGTGCTAGGGGGTAATTTTAATTTTATTTTTATTGAATTGGATGCTTGTTTTTCTACCAAATCAGGAAGACTCTGCATAAGTATCTGGTCTCCAATCGCCTTTCTGAGCACTCAGAAGCCCTTCCTGATTTTTGGAGAAGGTCAAGTGAACTTCCCAACGGAGAGACTTCAACAGGTTCTCCACTTCTCCAATCGTGCTGGATTCATCTCGGATAATCAATTTGCCTCCAGGCCTTACTATTCGATCCACCTCTGCCAAGACAGGTTGCAGTTTGCACCTGTACAAGAGAAAAAGGTCAGGCTTGAATCTTTATCTGTGCACTAGAAGCTTAAAAGAACGTATCTTATTCTACCTCTTTTTCAACTTTGAGAAAAGATGATCAGCGTGTAGTAGATCATATGTTCTTGGATATGTGCTGAACGACTCACACCAATCATGGTAAATCCCAAAGAGACCACGCTCGTAGATCACCGGAAGTGTATCAGGAGAGTCAATATTCACCACATTTATTACCCAGACTTTAAGGTCTCTCAACGCTGCTGCAAACCTGCAAGGACGAGTCATGCATGAGGTATCATGA

mRNA sequence

ATGTGCCTGTGCCTATTTACCTACTGCATTCTTCTGAAGATGCTAGGTGGTCTACAAATCTTCGTGCTAGGGGGTAATTTTAATTTTATTTTTATTGAATTGGATGCTTGTTTTTCTACCAAATCAGGAAGACTCTGCATAAGTATCTGGTCTCCAATCGCCTTTCTGAGCACTCAGAAGCCCTTCCTGATTTTTGGAGAAGGTCAAGTGAACTTCCCAACGGAGAGACTTCAACAGGTTCTCCACTTCTCCAATCGTGCTGGATTCATCTCGGATAATCAATTTGCCTCCAGGCCTTACTATTCGATCCACCTCTGCCAAGACAGGTTGCAGTTTGCACCTGTACAAGAGAAAAAGACTTTAAGGTCTCTCAACGCTGCTGCAAACCTGCAAGGACGAGTCATGCATGAGGTATCATGA

Coding sequence (CDS)

ATGTGCCTGTGCCTATTTACCTACTGCATTCTTCTGAAGATGCTAGGTGGTCTACAAATCTTCGTGCTAGGGGGTAATTTTAATTTTATTTTTATTGAATTGGATGCTTGTTTTTCTACCAAATCAGGAAGACTCTGCATAAGTATCTGGTCTCCAATCGCCTTTCTGAGCACTCAGAAGCCCTTCCTGATTTTTGGAGAAGGTCAAGTGAACTTCCCAACGGAGAGACTTCAACAGGTTCTCCACTTCTCCAATCGTGCTGGATTCATCTCGGATAATCAATTTGCCTCCAGGCCTTACTATTCGATCCACCTCTGCCAAGACAGGTTGCAGTTTGCACCTGTACAAGAGAAAAAGACTTTAAGGTCTCTCAACGCTGCTGCAAACCTGCAAGGACGAGTCATGCATGAGGTATCATGA

Protein sequence

MCLCLFTYCILLKMLGGLQIFVLGGNFNFIFIELDACFSTKSGRLCISIWSPIAFLSTQKPFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYSIHLCQDRLQFAPVQEKKTLRSLNAAANLQGRVMHEVS
Homology
[Close]
BLAST of Carg16078 vs. NCBI nr
Match: KAG7026761.1 (hypothetical protein SDJN02_10767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MCLCLFTYCILLKMLGGLQIFVLGGNFNFIFIELDACFSTKSGRLCISIWSPIAFLSTQK 60
           MCLCLFTYCILLKMLGGLQIFVLGGNFNFIFIELDACFSTKSGRLCISIWSPIAFLSTQK
Sbjct: 1   MCLCLFTYCILLKMLGGLQIFVLGGNFNFIFIELDACFSTKSGRLCISIWSPIAFLSTQK 60

Query: 61  PFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYSIHLCQDRLQFAPVQEKKT 120
           PFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYSIHLCQDRLQFAPVQEKKT
Sbjct: 61  PFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYSIHLCQDRLQFAPVQEKKT 120

Query: 121 LRSLNAAANLQGRVMHEVS 140
           LRSLNAAANLQGRVMHEVS
Sbjct: 121 LRSLNAAANLQGRVMHEVS 139

[Close]
BLAST of Carg16078 vs. NCBI nr
Match: KAG6594794.1 (hypothetical protein SDJN03_11347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 8.7e-37
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 43  GRLCISIWSPIAFLSTQKPFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYS 102
           GRLCISIWSPIAFLSTQKPFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYS
Sbjct: 21  GRLCISIWSPIAFLSTQKPFLIFGEGQVNFPTERLQQVLHFSNRAGFISDNQFASRPYYS 80

Query: 103 IHLCQDRLQFAPVQEKKTL 122
           IHLCQDRLQFAPVQEKK +
Sbjct: 81  IHLCQDRLQFAPVQEKKMI 99

[Close]
BLAST of Carg16078 vs. NCBI nr
Match: KAF7828903.1 (putative methyltransferase PMT27 [Senna tora])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0 

Query: 42  SGRLCISIWSPIAFLSTQKPFLIFGEGQVNFPTERLQQVLHFSNRAG-FISDNQFASRPY 101
           SG   I +W P AFL  ++  L+FGEG   FP +R QQ+ HF    G FI+DNQF+S  +
Sbjct: 34  SGHSYIGVWPPFAFLGAEQTLLVFGEGY--FPMQRFQQIFHFHKSLGFFITDNQFSSWSH 93

Query: 102 YSIHLCQDRLQFA 114
           YSI+ C    +FA
Sbjct: 94  YSINFCHYWNEFA 104

The following BLAST results are available for this feature:
BLAST of Carg16078 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026761.12.2e-72100.00hypothetical protein SDJN02_10767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594794.18.7e-3797.47hypothetical protein SDJN03_11347, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF7828903.13.8e-0846.58putative methyltransferase PMT27 [Senna tora][more]
BLAST of Carg16078 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16078 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16078 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16078-RACarg16078-RAmRNA