Carg07945 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07945
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMitochondrial import inner membrane translocase
LocationCarg_Chr07: 1831056 .. 1833508 (-)
RNA-Seq ExpressionCarg07945
SyntenyCarg07945
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAACCTGCTAATGAAATGAAATAAAATAACCCAAAAAAATACAGCCCCGAAGTTGAGAATCGGAAGCCCAGTTTCGAAACGCGTTATCAAATATAGTTTCTCCGCCTGCATCATTGTAAGAGATCGTCCCTCGAACGGAGCACAGCCATGAAAGATGACTATGAGGTATGGAAATTTCCTCCTTCATAACCCTCGACCTTCTTCATCTTGAACTCTTCATTATGTTCATATGAATCGAGTCCCTTTTATCACACTTATGGCCATTAATTATGCGATCTTGCGCTAAAAATCAAGGTTCTCAAGTCATCCCCCCCTTTTTCCCCCCTCTCCTGTTGATTTTGCAGTTCTCGTCGTCTTAAGGTTATTTCATGGTTAGATCTACTAACTTTGTTCTGCAACAGTTATCGCCTGCTAGAATTTCTGTTATGCAGAATTTTGTGGATTTTGATTCAATCTTTAAAGTTTGAGCTTATTGCTTAGATAGATTTAGCCTTTTTCAACTTTGCTGAGTGGTGACTAGTAACATTCGATATTCTTTATTTCCTTTTTCAATAGTGAGAGTGAAATAGTCATGTTCTTGTAAAAGATGTCGTGAATTACTGTCTTTCTGTAAAAGATTTCGCATCTTTGAAGTGGCGGTCATGAGAAACGAAATCCAGTTAATATAGTGGTGATTGAACGGGTTTAAGATTTAGGATGTTATTTTCCTTTTGAGTTTAGTACATTTCTAAAAAATTCTTTCCGATCCCTAGTTTCTAAGTTACAGAACTTACATTAACTAGCTTTTATTCTATATGGATGCGTTGTTCGTGGAGTTCCTGATTTTGCTACTTTGTTTCTGTCTGAATTTGTTGTAATAATGCTTTCCAGTTTCTACAATTGCCTACTATTATTCAATCCTTTTTTGGTCCCCAGAATTTTCTGAAATTCTGTTGATGCACAGAGAGCTGAGTATGATTTAACTTTTGTAGGATATTTGGTAATATCATGTGCTTAGATTTTGAGCATCAAAAAGTTAGAAATCTGTGTGTCACTAGTTTTGGACCTATTATCGTCCATATTTGATGTCTATATGGAGAAGCCTAGGATTTACTTTAAGGGCATTAGGTCAGTTCTGTTGTTATGCCTAAAGATGGCTTCCTGTTCTAACTGAAGTGTTCATGAGCCATTTGTAATTGAGTTAGGCTTCCTTGCCATCTATGTTTCTGTCTTTTGTGCTGTCGTTCTGATTATAAACATGACAAATTTGCAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGTAAATTTTCCTTCCTTAGACTTCTCATCGATAATTGTAGAATTCCTTTACTTTTGGTTGTGTTTATTTAATAGAATATGATAGAGTAACTTTAGTTTTCCCATTTACATTTATATTGAATTGAGAACAACGCCCATTCTTATCATGAGTTGCACACTTGATCACTCACTTTGTTATCTTTAATTCCTTTGCACTTGAACATTGTTTTCACATAAGAATCTTGGACTTACGTAATAGACTAAAGTGGACAATATCTGCCAACAGTAGTTTTGAGTTGTTACAGTCGTATCTGAGCCAGACACTAGACAGTGTGCCAGCGAGGACGCTGGCCCCAAAGAGGGTAGATTGTGAGATCTAACATCGGTTGGAGAACGGACCGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACTTGTTCTAAAACCAGAGGCCGACGACGATACGTAACAGGCCAAAGTAGACAATATCGGCTAGCGGTGGACTTAGGGTGTATTAGAGGAAAAATTAATACCCAACTCCATTTGTTTAGATTCATGGAAATCTTCCCTTTTGCACCTATTAAGATATCAAACCATAAAAGAACACGGTTGTTGTTTCTTGTTCAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAATTCGACTCCGAGTTGAATGCCTTCACTGCATATGAGAGTTGCCTGCCTTGTGCAGCCTCCTCTATTCTTTAAATCACAGCGTTCTCGTTAATTGCAGTTGTCTATTTGCTGTTTGCGAAGAGATGGAAACCTTCACTATTTTACATGTAGTTCTTTGAAGCTCTGTATGTTTAATGAGAGTACATGGACCGTTGGATATTAATTGGGCCCGGCCCAATATCTCCTCTCTAATGGGCTTTATCCAATTTGTTCCAAGCTTCGAAACACAAGTAAACATATGTATTTTTAACTTGGAACACATTATTGATCATTTTAATTGTAGAATTTTATTGATTGCTGG

mRNA sequence

TTAACCTGCTAATGAAATGAAATAAAATAACCCAAAAAAATACAGCCCCGAAGTTGAGAATCGGAAGCCCAGTTTCGAAACGCGTTATCAAATATAGTTTCTCCGCCTGCATCATTGTAAGAGATCGTCCCTCGAACGGAGCACAGCCATGAAAGATGACTATGAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAATTCGACTCCGAGTTGAATGCCTTCACTGCATATGAGAGTTGCCTGCCTTGTGCAGCCTCCTCTATTCTTTAAATCACAGCGTTCTCGTTAATTGCAGTTGTCTATTTGCTGTTTGCGAAGAGATGGAAACCTTCACTATTTTACATGTAGTTCTTTGAAGCTCTGTATGTTTAATGAGAGTACATGGACCGTTGGATATTAATTGGGCCCGGCCCAATATCTCCTCTCTAATGGGCTTTATCCAATTTGTTCCAAGCTTCGAAACACAAGTAAACATATGTATTTTTAACTTGGAACACATTATTGATCATTTTAATTGTAGAATTTTATTGATTGCTGG

Coding sequence (CDS)

ATGAAAGATGACTATGAGACTGATGAGAAAAAACAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCTTGTATTGGTAATCAAGTAAGACCATGCGATTTGAGATTTCATTTGATGAAGGAGATCTCTGGAATACCAACTTCATTGAAGAGAGAATCGTCCCAACGAGCAGCTTCTCCCGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGACAGCTTTCGAGCGCTGTAA

Protein sequence

MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRAL
Homology
[Close]
BLAST of Carg07945 vs. NCBI nr
Match: XP_022926304.1 (uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_023003947.1 uncharacterized protein LOC111497388 isoform X3 [Cucurbita maxima] >XP_023517285.1 uncharacterized protein LOC111781091 isoform X3 [Cucurbita pepo subsp. pepo] >KAG7026730.1 hypothetical protein SDJN02_10735 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. NCBI nr
Match: XP_038882825.1 (uncharacterized protein LOC120073967 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. NCBI nr
Match: XP_008440839.1 (PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 uncharacterized protein E6C27_scaffold253G001540 [Cucumis melo var. makuwa] >TYK12534.1 uncharacterized protein E5676_scaffold255G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of Carg07945 vs. NCBI nr
Match: XP_022132812.1 (uncharacterized protein LOC111005574 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. NCBI nr
Match: XP_004134854.1 (uncharacterized protein LOC101220806 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1KP11 (uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497388 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1EEQ3 (uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433498 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A5A7SN38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001150 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A1S3B238 (uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFR L
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of Carg07945 vs. ExPASy TrEMBL
Match: A0A6J1BUW3 (uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005574 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          MKDDYET+EKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQR
Sbjct: 1  MKDDYETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPDAMGESSSSGTARLDKVDSFRAL
Sbjct: 61 AASPDAMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of Carg07945 vs. TAIR 10
Match: AT4G35980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 133.3 bits (334), Expect = 9.6e-32
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 1  MKDDYETDEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQR 60
          M ++YE DE+KQAAADV+F YSKF MACIGN  RP D+R HLMKEISG+PTSLK   S R
Sbjct: 1  MTEEYEVDEQKQAAADVLFSYSKFAMACIGNHTRPTDMRLHLMKEISGMPTSLKGRDSSR 60

Query: 61 AASPDAMGESSSSGTARLDKVDSFRAL 88
          AASPD +GESSSSGTARLDK DSFRAL
Sbjct: 61 AASPDPLGESSSSGTARLDKTDSFRAL 87

The following BLAST results are available for this feature:
BLAST of Carg07945 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926304.14.5e-39100.00uncharacterized protein LOC111433498 isoform X2 [Cucurbita moschata] >XP_0230039... [more]
XP_038882825.11.3e-3898.85uncharacterized protein LOC120073967 [Benincasa hispida][more]
XP_008440839.13.8e-3897.70PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 unc... [more]
XP_022132812.14.9e-3896.55uncharacterized protein LOC111005574 [Momordica charantia][more]
XP_004134854.18.4e-3896.55uncharacterized protein LOC101220806 [Cucumis sativus][more]
BLAST of Carg07945 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07945 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KP112.2e-39100.00uncharacterized protein LOC111497388 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EEQ32.2e-39100.00uncharacterized protein LOC111433498 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A5A7SN381.8e-3897.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B2381.8e-3897.70uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=... [more]
A0A6J1BUW32.4e-3896.55uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
BLAST of Carg07945 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35980.19.6e-3275.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..78
NoneNo IPR availablePANTHERPTHR48210FAMILY NOT NAMEDcoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07945-RACarg07945-RAmRNA