Carg10844 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10844
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 11818464 .. 11823622 (+)
RNA-Seq ExpressionCarg10844
SyntenyCarg10844
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAATCTCAATTTCGAGTGCTACAAGTTATTTCTTCTCTCTTGTTTCATATTTTTCTTGAACTGGCGAGCATAATCTAGCACTCAGATGATCTATTCGTATTTCAGAATCGGTAAAGAATGATTTCTCTATGAATACGGAGTCATTGAGTTTATTATCGATAGTGTTATTCTTGTCTCTGGTGGTGAGAATCGTAGTTCCCTATGCTATAGATCATATCTGCTTATTCTTCATATTCTCCTGGAACTGGAGATCTTTTCTAGCACTCCAAAGATCTTGTGGTTTTTTAAAGAATGATTTCTATATGGACTCGGAGTCATTAATTTCAATATTGCAGAAATTGCTAGTAATTCTTGCCGTCTTATTTAACCTTGTCATGGATTATTTTGATTATAAATTTGAGTTCCAAGTTTGTTTGGTCGGAACTGAAGTACTGTTAGTTGTGAGTAACTGTTCTTTCACAAAGAACTCTCAGAAATTGTATTAAACGAAAGTAAAATTTTGTAATAGTAAGGTTAGGTTTCAAGTTTTTTTATCTTCTTCTCCTACTTGAAAGCCGAGTTTATAGCTACATCAGGTTTCAAGTTTTTGAAGTTCTACTAGAGTCGATCAAGTTGTTTGGTAGCCTTTTTATTCTTCTTTTGTAATTTTTGTTAATTGCATTAATGTCTCAACTTACGGCTAGGTTAAATCAAGCTTTTGGCTGATGACTTTTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGTTGAATTAACCATTTATTGGCCCTTCCTGATGTTTTTATTCTAGTATTCTCTAGATCTATTTGTAGATCAGAATTGTTAAAGATTGATCTCTGAATAAAATTTTGGAGTTATTAAGTTGAATACTAAAGGTTCTTGCCAGGGTTTCTGGCATTGTAATTTAGAATGGACAATGGTTTTTGACATTGTAAATTTGCAGTTGATTATCGAAATTTTGAATTTGTTTTCCTGGTTAGTTTGCTTGTTCAAGTACTGTAGTCTAGGACCGTATTGAGATAATATTAAATAAACAATGCTCGTAAATTAGTAGAGACGCATGCTAAATTTGTCATAGGTGACTTTCAAGTTTATAGTCACACTCACATGGTCACATTGGTTTCAAGTTCTGAAATTCTATGGAAGTGAATCAATGTGGTAGCCATGTAGTTGATAAATTTTCTCTTCTTCTTTTGTAATTTTATGGATTGTATCAATGTCCCAACCTCGGGCTAGTTTTATATCATGCTGGAAGCAAATGATTCTGTGAAATTGACCATTGGATTGGCCGAGCAGACTAACCCCTAGTGTCTACTCACTACTAAAACACAAATAATTTGAAGTTATTTATACATAAGCTACAACAGAAGCAGTTGGTTGAAACATTCTATGTAAATATTAAATAAGTTTAATTACATTTGAAATGTCAAAAAAGTTCGGTGTAAGGTAGTATTTCTTGAAATAAATAAACCTCCCAACCTAGTTTTACCTGTTTTTGCAAGTGAACTTGAAACACCTTTCCTCCTTTCATCTATAAGTTGAACCTTATTGGTCTGGGAAGTTTTCAGCTTCTATACTTCAATCAGAGTATAAACGGTTTCCATTTAAATTAAAGCCCCTTATTTGTAAGATAGATTTATTTCCTCTACTTTTCTGCTCTAGGAAACTCTGGTCTGGGTTAGTGGTATTTTAGATTTATTTCCTCTATTTGATATTTCATAGACTTTGCAGGTCCTATTAGGTAGCCAAAAATTATGGCGTCTCTGAAAGACCTGCTTCCTGCTGTAAAGTCAACAGCTGTGACACAGTACGATCACTCAAATGATCCATGGTTCAAGCAGCGGTTTAGTTCATCAGAAGCAGAGCAAACTTCTGTTGTTAAGGCTAATCCTGTACCACCTTACTTGAAGCGTAGTGGATTTATTCCTCGGAAAGTAGAGGATTTTGGAGATGGTGGTGCTTTCCCAGAGATTCACATTGCTCAATACCCACTCGACATGGGTAGAGACAAATCATCAAAGCCTGGATCAAAGATCCTTCCTGTGACGGTGGATGCCCATGGAAATGTTGCATATGATGCTATTGTAAAACAGAATGAAAATTCTAAAAAGATTGTTTATTCACAACATAAAGACCTCATTCCAAAGATCTTGAAAACTGATGAAGAGAATGATGAGGATGAAGAGATGCAGAAAGAGATTGAAGAAACAACCGAGGAAACGAAGTCTGCGCTTGAAAAGATAGTGAATGTAAGATTGAGTGCAGCTCAGCCTAAAAATGTAGCCAAGCAATCATCAGATTCAAAATTTATCAAGTATAAGCCATCTCAGCAATCAGCAGCTTTTAATTCAGGTGCCAAGGAGAGAATCATTAGAATGGTGGAAATGCCAGTAGATCCACTCGAGCCTCCAAAGTTCAAGCATAAGCGTGTTCCTAGAGCCTCGGGGTCTCCTCCTGTGCCAGTCATGCATTCCCCTCCTCGTCCTGTCACCGTGAAGGATCAACAGGATTGGAAGATTCCACCTTGTATTTCAAATTGGAAGAATCCGAAAGGTTATACAATCCCACTTGACAAGCGTCTTGCAGCTGATGGCAGAGGCCTTCAAGAAGTTCAAATCAACGATAATTTCGCAAAGCTATCTGAAGCACTGTATGTTGCAGAACAGAAAGCAAGAGAAGCAGTTGCAATGAGATCTAAGGTTCAGAAAGAAATGCTTATGAAGCAGAAGGAGAAGAAGGAATTGGAGCTTCGAGCCTTAGCTCAAAAGGCTCGGTCTGAGAGGACTGGTGCTGCACCTCCGCCTGCAGTTTCTTATCCATCTGAGAGGAGCACTGCAGATAGAGACACTTCTGAGATGAAAGAGGAGTTCGAGCATATTAGAGAAAAAGAGAAGGCTTTATCAAAGGAGACGAGGGAAGAAAGGGAAGAGCGGTTGCAGCGTGAGAAGATTCGTGAGGAACGACGTAGAGAGAGGGAAAGGGAAAGAAGGTTGGAAGCCAAAGATGCAGCAATGGGGAAGAAGAGTAAGATTACAAGAGATAGAGATCGTGATATTAGTGAGAAGGTTGCACTCGGAATGGCTTCGACCGGAGCAGGTAGAGAGGGAGAAGTTATGTATGATCAGAGGCTATTTAACCAAGATAAAGGAATGGACTCGGGATTTGCCAATGACGACCAGTACAATATATACGACAAGGGCTTATTTACCGCTCAGCCCACTCTCTCAACCCTTTACAGACCTAAAAAAGATGCCGATTCTGATATGTACGGAGGTGCTGACGAACAGTTAGACAAGATTATGAAGACTGATCGCTTCAAACCAGACAAGTCATTTTCAGGCACTGCAGAAAGGTCTGGACCTAGAGACAGACCGGTGGAGTTCGAAAGAGAAGTCGAAGAAGCCGATCCATTTGGACTGGATCAGTTCTTGACTGAAGTGAAGAAAGGTAAGAAAGCTATGGATAAAGTTGGCAGTGGTGGGACAATGAGAGCCAGTGGTGGTTCATCAACGCGAGACGGCTATGATGGTGGCTCCGGTAGAAGTCGCATTGGATTTGAAAGAGGGCATTAGAAGCTAAAAATCCAATCAGTTTTATTATATTGCTACTGGCATTAGAAGGTACCCTCCAAAAAGCACTTCTGAACTATGAGTAAGATATATTTGATTGCCATTTTACTCCATAATTTTATCTTGCTATGCTTTATTGCGTTGGAAAATCTTTAATTCGTTTGGATGGATTGAATTTTTCTTTGCGACAGGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGGTGACATTTTTACTTCTATTTAGATATTTCCAGTTGTTTTACATTATTTTCTCCCTTATTTCCTTTTTATTTTTGTTTGTTTGTTTTTTTTTTTTTTTTGCTAATTTGCAAAAAAAAAAAAAAAAAAAAAAAATTGCAATATTACTTAACCTCTCTTAAATGTTTCAAAACTATCCATTGAGCTGTTGGAGAAGGTTGAAATGGTGTGGAAATTTTCAATTTCTATTGAAAATATTAAAAAGAATTTTTCTATTTTAAGATAAGTTATGAAACGTTTTTGAAGTGAGTTATATTGCAACTTTCAATAGTATAAAGGTATTTTTTACCATATAGTTTTTTTTAATAGAAATTTCCGCGTGTACAATTTACTCTCCACTTATAGCCATGGATTTGCATGCAGAATCCGAACGCAATTTACTAATGCAAACTTCATGGACATTTGTCGGCCTTTTTAGTACTTTAAAGCTACAATTCCAATTTGTCCATTTTTTAACTTTCTTATTTAGGTATACTACTCTGCTTGAATCTAAGATTTGAATGTCAATATCTGTTTTGTGATATTCTTTCTCTATTGCTCTTCATTAACCTTGGATCTTGGATCTTCATTAACCGAAATCCATGGAACTGAGAAGAGAATAACCTTGGATCTTCTTTCTCTATTGCTCTTCATTAATCGAAATCCTTTGTTCGTAGGAAACTAACGAAGATCAACGGTCGTCACAGCCCATCTATCTGAAAATTATTTAAAAACACGTAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGGTATTCCCATTCCCCTTCCCTCCCCCCCCCCCCCGCCCCCCCCCCCCCCGCAAAAAAAAGGTTTAAATCCTCCTTTGATTATTGATCTGTTATACCTATAATCGATTTTCAAATTTATGCTACAACATTTTTAATTTCTGTTTTTTGTTTTCTAAAATATAAGTTATTTGACTAATATTTGATAACAGTTTTCTGCTTATTTATTTTGAATAAAAACTGATTGTTTTTAAATTTCATGAAATTGTAATTTAAATCTAAAAACAAAAGACAAAGTTGTTAAGCCTTTGTTTGAAGTTATCATATTTCCAAAGAATTCCTAGTGTGTTTGTCATTTTTCTCCAAAATACATTGCATCTTTTTCAATCCTAACTTTTATTTTATATCGAAGTTAAGCTTTTGAGCTAAATCATATTTTCTTTTGAACGAACCTTTTTTAATCTCTTAACATTCCTTCTTATTTTATCACGATTTCAATTTTAGTAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

mRNA sequence

ATGGTGAGAATCTCAATTTCGAGTGCTACAATTGAATTAACCATTTATTGGCCCTTCCTGATGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

Coding sequence (CDS)

ATGGTGAGAATCTCAATTTCGAGTGCTACAATTGAATTAACCATTTATTGGCCCTTCCTGATGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

Protein sequence

MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARLQNRRVNPFS
Homology
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BLAST of Carg10844 vs. NCBI nr
Match: KAG7030448.1 (hypothetical protein SDJN02_08795, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL 60
          MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL
Sbjct: 1  MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL 60

Query: 61 QNRRVNPFS 70
          QNRRVNPFS
Sbjct: 61 QNRRVNPFS 69

The following BLAST results are available for this feature:
BLAST of Carg10844 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030448.12.1e-31100.00hypothetical protein SDJN02_08795, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10844 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10844 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10844 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10844-RACarg10844-RAmRNA