Carg19806 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTATGCCGTTATCCCAAGAAAAACGAACTGAACAACAACACAGTTCCAGTTGGAGCGCTGATTCAGAGCAATGAATTTGGTTTCTGCGCGCACCCAAAATCCCCTTCGATGCGCTTCCCTTTCGATGTTATCCTCATCGATTAACCTCCCTTCCCACTTTCCCTCTCCTCTGCTTCTCAAGCCCTATGCTCCCGATTCCAAACTCTATCCTGCAAAACTAGCGACTACTAATGGCGATGCTCGTCGCAATTTCAGATCGCCTGTCGTTGTCAAGGCTTCAATAACTTCAGGGTATGGCCCAGAGATTGGAGAGATTCTGGGCGATGTTCGCATTTTTACTGCTGCTGGTGAGCCAGTTCTGTTCAAGGACCTCTGGGATCAGACTGAGGTACAATCATTGGCTCTTGTGTGTTTATTTACTGATTATTTTCTCTGTCGCTTTCTTTTTTTTTCTTTGGTGCTTTTGTTTACAAATAGGTGATGTTCTTTGGCTAATTGATTCTGATGATGGATGTGTGTTTAATTGATCAATGAACTGAAATCTCCAATATGAAAGACACTCTCGTTCCCTTCTCCAAGCCCAATCCACCCCTTTTGGATTCCAGCGTCCTTGCTGGTATATCGCCTTGTGTCAACCCCCTTCAGGGCTCAGCCTCCTCACTGGCACATCGCTCGGTGTCTAGGTTTAGAACCAATTGAAACAGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCACGTTTGGACTTCCCCTCAAGGTTTTTAAAACGCATATGCTAACCAGTGTGAGATCTCACATGAGTAATATGTTCTAGGTGTTGCATATTTTTTGTCAAGTATTTTGCTACCTTTTTGACTCCTATCACAGGTTTTAGGTCATCTCTTTTTCTTTCCTCATGGTTTATTCTTTCCACTGAACTAAAGAAGGGGTTCATTCTTTCAATGCCTTGCAACAAAGATGGGAAGGTTCCTAAATTGAATAATTAGCGACATTCGTATAATAACTGGACCCACCTTTTTTTTTTCCTGAGACAAATCATTGGAGTTCAATTATCGAGTTTCCAAATCCAAATGCAATTTGTTTTCTGTTCTTTCAATCATCTTTGTTTCCTAACGTACCAGAGCAAATTGTTAAAAGATTTTCCATATCTTAAATGACTTAAGCATATAAGCATAAGATTGCATAGTTTATTTATTCTACATACTCCACTTTTTATTCTGTTCCTTTGATTGCATAGATGTTTTATTTCTTGGTTACAAATTTAGTCTCTGTTACTTTTACGTGCATGGGTGAAATGCAAATTCTTTTTCTAGCTCTTCATGGTAGAATAAATATCAAAAAGTGTATAATTCGTGATGAACATATATAGAGAGCTCACTAGTGTTACATTTATTGACGGTCGTAATTTGATACGTTATAAGTTATAGATTTGAATCTCTACTTCTATTTTTCTTTACCGAATATTATTTAGACTATATTTGATTGGTGTTTACCCAGGGAATGGCTGTTGTTGCCCTTTTGAGGCATTTTGGATGCTTTTGCTGGTAAGTCATCAAATTAGACCATTCATTTGCAAATTTGAAATTTTTGGTGAGTTGACAGTTGCTTGCTCTTGTTCTAGTTGGGAACTTGCTTCCACTTTAAAAGAATCCAAAGCAAGGTTTGATTCATCTGGTGTTAAACTAATAGCCGTAGGCATTGGAACTCCGAATAAAGCACGTATCCTAGCTGAGCGGGTATCGATTTTCCTTGTGTAAATTATCGCTTTAATTGTCCATGGCTGCATCCTTTTCTCTATTAATGACATTTCATTTTTTAAGATTTATCTAATAATTATTCGATTTAGATTAGATGCTCTAAATCAAAACACATCGAATTTGGATATTGTTTATAATATGAAGGATCCGATAACATCAGTAACACGTGGTTAAATTACAAGTTTGGTCTCACATCAATTAAACTTGTCTATTTAATTTCTGTACTTTAGAGTTTTTCTAATAGGTTCATAACTTTTAAGATTGCATCAACCTCGTCTCTATATTTTAATAGTTTCTAATAAGTCATTGTTGTTAAGATGTTACTCTGCATTAGTTTCTAATGAGTTCTTTAATTTTTAAGTTTGTGCGTAATGTAACGGATCAAGCCTGCCACTAGCAAATATGGTCCTTTTTGGCTTTTCCTTTCGAGCTTCCCCTCGAGATTTTAAAACGTGTCTACTAGGGAAAGGTTTTCACACCCTTATAAGAATGTTTCGTTCTCTTCCAATCGATGTGGGATCTCACATTTTTAAACTAATAAAATAAACAATAAAGATTTATCAGGTTTTTTAAAGATGTTTGTAGACAGAGCATATACATTATAAAAATTTCAACAATTATTGTATCTCTTTTGGTTTCTCTATCCTGCCTTTCATGGTCATAACATCTTAATTCTTCAAATTCCAGCTGCCTTTTCCAATGGATTGCCTTTATGCTGATCCTGATAGAAAGGTAATCCGATGCTACAAATGTCTATGCCATTATTACGTCTCTTTTTTCCTTTATTTTTTCGGAAAGGTTCCTTTTGTAGGGTACTCGGGAACAGATCCAATGGAGACGGGTTGGTTCATTTTTTTGATGTTTGTCACGCTAATCATAATATGTTCATGCAGGCATATGATTTACTAGGTTTATACTATGGCTTTGGTCGTACATTCTTTAATCCAGCTAGTGTAAACTTTCTCCTTCCATCTACTTTATGATCATTTAACAGAATTTATTTGCATGCTTTTTTTTTTTTTTAATTTTAATTTTGTCATCCCCCAATCGTCAATGTTTTTAGACGAAGGTATTTTCCAAGTCGAGGTTTTCGACCCTGCGAGAAGCCATGAAAAACTATACTCTTGAAGCTACCCCAGACGATAGAAGCAGCGTATTACAACAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTTTTGTTCATATGAAAAACACTTTTTTGATCTTCAGTTTGTGGAAACTTTTCCATATTTCATGTTTGTTTGATTAGGGAGGGATGCTTGTTTTCAAAGGAAAACAACTGTTGTATGCTCGAAAAGATGAAGGTACCGGGGACCATGCTCCGTTAGATGAAATCTACGACGTCTGTTGTCGAGTCCCGACCTGAATCTTCACTCATAACGTGTGGATATTTGATTGGTACGTTGTTTCTTTTAATCTCTTAGCAAAGCATACCAGGAGAGAAAAAATGTGCTGGTGTTGTAGAGACTAAATCTTGATACTTTAATGCTCAATAGAGATATTCCAATAATATAAATTACATGAACATAGTATAAAATATAAATAAACATGAATTTAACTCGCCATTATTGATATATCATAGATTTAAATCTCGGATTGGAAAATGTAATCAAATGCAATATGGTTCATGATTAGTGTGACTAACTTTTCGTGATTGTTCCTTGAACTTTTATTTTTTCT ATTTATGCCGTTATCCCAAGAAAAACGAACTGAACAACAACACAGTTCCAGTTGGAGCGCTGATTCAGAGCAATGAATTTGGTTTCTGCGCGCACCCAAAATCCCCTTCGATGCGCTTCCCTTTCGATGTTATCCTCATCGATTAACCTCCCTTCCCACTTTCCCTCTCCTCTGCTTCTCAAGCCCTATGCTCCCGATTCCAAACTCTATCCTGCAAAACTAGCGACTACTAATGGCGATGCTCGTCGCAATTTCAGATCGCCTGTCGTTGTCAAGGCTTCAATAACTTCAGGGTATGGCCCAGAGATTGGAGAGATTCTGGGCGATGTTCGCATTTTTACTGCTGCTGGTGAGCCAGTTCTGTTCAAGGACCTCTGGGATCAGACTGAGGGAATGGCTGTTGTTGCCCTTTTGAGGCATTTTGGATGCTTTTGCTGTTGGGAACTTGCTTCCACTTTAAAAGAATCCAAAGCAAGGTTTGATTCATCTGGTGTTAAACTAATAGCCGTAGGCATTGGAACTCCGAATAAAGCACGTATCCTAGCTGAGCGGCTGCCTTTTCCAATGGATTGCCTTTATGCTGATCCTGATAGAAAGGCATATGATTTACTAGGTTTATACTATGGCTTTGGTCGTACATTCTTTAATCCAGCTAGTACGAAGGTATTTTCCAAGTCGAGGTTTTCGACCCTGCGAGAAGCCATGAAAAACTATACTCTTGAAGCTACCCCAGACGATAGAAGCAGCGTATTACAACAGGGAGGGATGCTTGTTTTCAAAGGAAAACAACTGTTGTATGCTCGAAAAGATGAAGGTACCGGGGACCATGCTCCGTTAGATGAAATCTACGACGTCTGTTGTCGAGTCCCGACCTGAATCTTCACTCATAACGTGTGGATATTTGATTGGTACGTTGTTTCTTTTAATCTCTTAGCAAAGCATACCAGGAGAGAAAAAATGTGCTGGTGTTGTAGAGACTAAATCTTGATACTTTAATGCTCAATAGAGATATTCCAATAATATAAATTACATGAACATAGTATAAAATATAAATAAACATGAATTTAACTCGCCATTATTGATATATCATAGATTTAAATCTCGGATTGGAAAATGTAATCAAATGCAATATGGTTCATGATTAGTGTGACTAACTTTTCGTGATTGTTCCTTGAACTTTTATTTTTTCT ATGAATTTGGTTTCTGCGCGCACCCAAAATCCCCTTCGATGCGCTTCCCTTTCGATGTTATCCTCATCGATTAACCTCCCTTCCCACTTTCCCTCTCCTCTGCTTCTCAAGCCCTATGCTCCCGATTCCAAACTCTATCCTGCAAAACTAGCGACTACTAATGGCGATGCTCGTCGCAATTTCAGATCGCCTGTCGTTGTCAAGGCTTCAATAACTTCAGGGTATGGCCCAGAGATTGGAGAGATTCTGGGCGATGTTCGCATTTTTACTGCTGCTGGTGAGCCAGTTCTGTTCAAGGACCTCTGGGATCAGACTGAGGGAATGGCTGTTGTTGCCCTTTTGAGGCATTTTGGATGCTTTTGCTGTTGGGAACTTGCTTCCACTTTAAAAGAATCCAAAGCAAGGTTTGATTCATCTGGTGTTAAACTAATAGCCGTAGGCATTGGAACTCCGAATAAAGCACGTATCCTAGCTGAGCGGCTGCCTTTTCCAATGGATTGCCTTTATGCTGATCCTGATAGAAAGGCATATGATTTACTAGGTTTATACTATGGCTTTGGTCGTACATTCTTTAATCCAGCTAGTACGAAGGTATTTTCCAAGTCGAGGTTTTCGACCCTGCGAGAAGCCATGAAAAACTATACTCTTGAAGCTACCCCAGACGATAGAAGCAGCGTATTACAACAGGGAGGGATGCTTGTTTTCAAAGGAAAACAACTGTTGTATGCTCGAAAAGATGAAGGTACCGGGGACCATGCTCCGTTAGATGAAATCTACGACGTCTGTTGTCGAGTCCCGACCTGA MNLVSARTQNPLRCASLSMLSSSINLPSHFPSPLLLKPYAPDSKLYPAKLATTNGDARRNFRSPVVVKASITSGYGPEIGEILGDVRIFTAAGEPVLFKDLWDQTEGMAVVALLRHFGCFCCWELASTLKESKARFDSSGVKLIAVGIGTPNKARILAERLPFPMDCLYADPDRKAYDLLGLYYGFGRTFFNPASTKVFSKSRFSTLREAMKNYTLEATPDDRSSVLQQGGMLVFKGKQLLYARKDEGTGDHAPLDEIYDVCCRVPT Homology
BLAST of Carg19806 vs. NCBI nr
Match: XP_022930043.1 (prostamide/prostaglandin F synthase [Cucurbita moschata] >XP_022930044.1 prostamide/prostaglandin F synthase [Cucurbita moschata] >KAG7029857.1 Thioredoxin-like protein AAED1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 545.8 bits (1405), Expect = 2.1e-151 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of Carg19806 vs. NCBI nr
Match: KAG6583617.1 (Thioredoxin-like protein AAED1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 543.5 bits (1399), Expect = 1.0e-150 Identity = 266/267 (99.63%), Postives = 266/267 (99.63%), Query Frame = 0
BLAST of Carg19806 vs. NCBI nr
Match: XP_023519132.1 (prostamide/prostaglandin F synthase [Cucurbita pepo subsp. pepo] >XP_023519133.1 prostamide/prostaglandin F synthase [Cucurbita pepo subsp. pepo]) HSP 1 Score: 537.3 bits (1383), Expect = 7.3e-149 Identity = 263/267 (98.50%), Postives = 264/267 (98.88%), Query Frame = 0
BLAST of Carg19806 vs. NCBI nr
Match: XP_022970334.1 (prostamide/prostaglandin F synthase [Cucurbita maxima]) HSP 1 Score: 526.9 bits (1356), Expect = 9.9e-146 Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 0
BLAST of Carg19806 vs. NCBI nr
Match: XP_038902955.1 (prostamide/prostaglandin F synthase [Benincasa hispida]) HSP 1 Score: 441.8 bits (1135), Expect = 4.2e-120 Identity = 217/268 (80.97%), Postives = 236/268 (88.06%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy Swiss-Prot
Match: Q58CY6 (Prostamide/prostaglandin F synthase OS=Bos taurus OX=9913 GN=PRXL2B PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07 Identity = 54/171 (31.58%), Postives = 75/171 (43.86%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy Swiss-Prot
Match: A9CQL8 (Prostamide/prostaglandin F synthase OS=Sus scrofa OX=9823 GN=PRXL2B PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07 Identity = 55/177 (31.07%), Postives = 75/177 (42.37%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy Swiss-Prot
Match: Q5R7S9 (Prostamide/prostaglandin F synthase OS=Pongo abelii OX=9601 GN=PRXL2B PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-06 Identity = 51/174 (29.31%), Postives = 73/174 (41.95%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy Swiss-Prot
Match: Q8TBF2 (Prostamide/prostaglandin F synthase OS=Homo sapiens OX=9606 GN=PRXL2B PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 9.3e-06 Identity = 51/174 (29.31%), Postives = 72/174 (41.38%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy Swiss-Prot
Match: Q9DB60 (Prostamide/prostaglandin F synthase OS=Mus musculus OX=10090 GN=Prxl2b PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 9.3e-06 Identity = 51/186 (27.42%), Postives = 77/186 (41.40%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy TrEMBL
Match: A0A6J1ETX1 (prostamide/prostaglandin F synthase OS=Cucurbita moschata OX=3662 GN=LOC111436511 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 9.9e-152 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy TrEMBL
Match: A0A6J1I579 (prostamide/prostaglandin F synthase OS=Cucurbita maxima OX=3661 GN=LOC111469330 PE=4 SV=1) HSP 1 Score: 526.9 bits (1356), Expect = 4.8e-146 Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy TrEMBL
Match: A0A1S4E1M8 (prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497363 PE=4 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118 Identity = 212/268 (79.10%), Postives = 229/268 (85.45%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy TrEMBL
Match: A0A5D3BK60 (Prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00840 PE=4 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118 Identity = 212/268 (79.10%), Postives = 229/268 (85.45%), Query Frame = 0
BLAST of Carg19806 vs. ExPASy TrEMBL
Match: A0A0A0LJF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279270 PE=4 SV=1) HSP 1 Score: 429.9 bits (1104), Expect = 7.9e-117 Identity = 212/265 (80.00%), Postives = 225/265 (84.91%), Query Frame = 0
BLAST of Carg19806 vs. TAIR 10
Match: AT5G65840.1 (Thioredoxin superfamily protein ) HSP 1 Score: 318.2 bits (814), Expect = 6.5e-87 Identity = 163/269 (60.59%), Postives = 202/269 (75.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|