Carg05932 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05932
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 21201486 .. 21202458 (-)
RNA-Seq ExpressionCarg05932
SyntenyCarg05932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTCAAGCAAGCCTTTATAAAGATGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGGTGAGGCAGTCTTATGCCAAGACTCATTTTGAGTGTAGTGAGTTGTAGAGTGTGTGGGCAACGGTGCATCCAGGATGCAATGGCCTTGTCTGCGTAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGTCTTTTGGGAGGATAAGCTTTAGACTAAGCCAACTATGGGCTAGAAGGAGCTCATTTTGAGTAGCTTGAATGAACGCAACAAAGTGAAGTTGGTATCAAAAGGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCTAATGGTCTCTTCTGTAGCGTTTTTTTATAGCTATAATAGAGTATGATACTATAGTTTATATAAGTTTCATTTATTCATGTATTATTTGTTTACTATTAGTTTTTGGGTTAGAATGTGCACATCCTTTGACTCGTATTTGACCTCTCCTAGCAAGATGAGAACCTTTTTATCTATGGTTATGGTACACATTCCTTTCAAAAACGAAAACATTATGCTATGGATGCACAAATAAAGGTAGAGGTCCTTCTACGATTCTTAACGAACGATTCCAACCAAGAGCTAGTTAAAGGTCTCTTGAATTTTCTTTATTTTGATTTTTGTAATTGCTCCTGGATCAGTGGTTAGATTCATATCATGTTTTCTTTTCATTTTCCAGCACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATTCATGGCTGTTAACATTCATTCTTAAAGGTCGGTCAAGATTCATAACCTTGACACTTCAAATGTATATACTTTTCTTATTAGGACGATAGTCTAATC

mRNA sequence

ATGGATGTTCAAGCAAGCCTTTATAAAGATGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCTAATGGTCTCTTCTGTAGCCACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATTCATGGCTGTTAACATTCATTCTTAAAGGTCGGTCAAGATTCATAACCTTGACACTTCAAATGTATATACTTTTCTTATTAGGACGATAGTCTAATC

Coding sequence (CDS)

ATGGATGTTCAAGCAAGCCTTTATAAAGATGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCTAATGGTCTCTTCTGTAGCCACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGA

Protein sequence

MDVQASLYKDVRAHWLFIDTCLQPNGGTYGYPKRQDEHPKAKQAIVGSRESGDTTMGRPSQGLMGSGFLILMVSSVATNDDMLEEMKQQEYALQQNGKP
Homology
[Close]
BLAST of Carg05932 vs. NCBI nr
Match: KAG7033255.1 (hypothetical protein SDJN02_07309, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 1.4e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MDVQASLYKDVRAHWLFIDTCLQPNGGTYGYPKRQDEHPKAKQAIVGSRESGDTTMGRPS 60
           MDVQASLYKDVRAHWLFIDTCLQPNGGTYGYPKRQDEHPKAKQAIVGSRESGDTTMGRPS
Sbjct: 1   MDVQASLYKDVRAHWLFIDTCLQPNGGTYGYPKRQDEHPKAKQAIVGSRESGDTTMGRPS 60

Query: 61  QGLMGSGFLILMVSSVATNDDMLEEMKQQEYALQQNGKP 100
           QGLMGSGFLILMVSSVATNDDMLEEMKQQEYALQQNGKP
Sbjct: 61  QGLMGSGFLILMVSSVATNDDMLEEMKQQEYALQQNGKP 99

The following BLAST results are available for this feature:
BLAST of Carg05932 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033255.11.4e-49100.00hypothetical protein SDJN02_07309, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05932 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05932 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05932 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05932-RACarg05932-RAmRNA