Carg04507 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04507
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGeranylgeranyl transferase type I subunit beta
LocationCarg_Chr04: 20098549 .. 20100070 (-)
RNA-Seq ExpressionCarg04507
SyntenyCarg04507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGTTTAGTGACACAGGCGGTGGAACGTATTGTGCTATTGCATCTCTCCGTTTAATGGGTTTCATTGAAGATGATCTTCTCTCTAGAGATAATTCTTCTTCCATAATAAACGCCCCGTTGTTGCTGGAGTGGTGCTTGCAGGTTCATTTTCATCATCCTACCTTGAGTTTTCAATCCTTCTACGTTGTAATGCTTAGAAATTTGACTTCTACTTCAAAATAAGTGCTAACGGCAGATTGGAAGCAAAGACATGTTTACAAAAAATAGTTTTTTCTTCCTTTGATTAGCTTCGTTCTCATTTTAACGCGCTAAGCTACTATTAATCGAAGAGTAACCAAATATATTCTTGTATTTGGATTACAGAAACAGGCAGCTGATGGAGGATTTCAAGGTCGACCTAACAAGCCCGCTGACACTTGTTATGCATTTTGGTAAGGAAAAAAATGAATAAACGTGTGAGCTTATTCTAGGACAATATGAGATCTATCTCTTGACTAAGTAATGTTGTGGTAGGATTGGATCTACCTTGAGGATTTTAGGAGGCTTCGATCTCATTAATAAGAAGGCTTTGAAGGGATTTCTGCTGACGTGCCAATTTAAGGTACTATCGCTCTTCTTTACCTTCCATTTGCATTTTTTTTTATTTATTTAAACAAAAATTCAAGATTTTCCCATGGATAAATCATGAAAGCACAGTTCTAGAATGGATATACGCCTACTCCCAATTTCTGAACTAACTATAAAAGGGTTATGCAGCTCAACATGAATTAGTGTTTGAAACTTTTTGCCATAATTTTCCTTGACAGTACGGTGGTTTCAGCAAGTTTCCGAGGGACTTTCCTGATTTATACCACACCTACTATGGATTTACTGCATTTAGCCTCTTGGAAGAACCCAACATCAACTCTCTGTTTGTTGAACTGGGAATAACAGAAGCTTCTGCCTGGAGGATTTAACGTGATAACGTCGATTAACATGGTACGAATCATCTTCACTGCCACACCAAATCGGGTATCATTTATTTGCCCCTTTCTAAATCCTTCACTTGGTCTACACAACTTATCACAACGACATTGATCATAGCTGTTCACAAGTCTAGATGGAGCTTCATCAGACTCCTGTTTTGTAGTTTAATATTTCAAGTGTTAAACACAAGATCTGGTTTTGATGCTCTGTTTCTTTAAGTTAAAGTAAACACATTTAGTTTCCACAGCAATTTATCAGTAACATTTTGTTCATTCTTCTGGATTTGCTGACATAAATCTGTGGGCATAGTGCATGAACATATATTCATGTTGTACCTTTTCATTAAACTTGTTTCTAGAGCAAGAAACTACTGAAGGAGGACAAAGAAACAGCTCAAATACCTTTCCCCCCTTTTTTAGTACTTCGAGTCTTATTATGTTTCGGATTTGGTACTTTACTTTCCATGTCTCTAAAAGGAACATTCTTGATCAAACATGATTTTTTTTTTTAATTAAAAAAATAAAAGGTCTACATAACAATTAAATTATTT

mRNA sequence

ATGATTGGGTTTAGTGACACAGGCGGTGGAACGTATTGTGCTATTGCATCTCTCCGTTTAATGGGTTTCATTGAAGATGATCTTCTCTCTAGAGATAATTCTTCTTCCATAATAAACGCCCCGTTGTTGCTGGAGTGGTGCTTGCAGAAACAGGCAGCTGATGGAGGATTTCAAGGTCGACCTAACAAGCCCGCTGACACTTGTTATGCATTTTGGATTGGATCTACCTTGAGGATTTTAGGAGGCTTCGATCTCATTAATAAGAAGGCTTTGAAGGGATTTCTGCTGACGTGCCAATTTAAGTACGGTGGTTTCAGCAAGTTTCCGAGGGACTTTCCTGATTTATACCACACCTACTATGGATTTACTGCATTTAGCCTCTTGGAAGAACCCAACATCAACTCTCTGTTTGTTGAACTGGGAATAACAGAAGCTTCTGCCTGGAGGATTTAACGTGATAACGTCGATTAACATGGTACGAATCATCTTCACTGCCACACCAAATCGGGTATCATTTATTTGCCCCTTTCTAAATCCTTCACTTGGTCTACACAACTTATCACAACGACATTGATCATAGCTGTTCACAAGTCTAGATGGAGCTTCATCAGACTCCTGTTTTGTAGTTTAATATTTCAAGTGTTAAACACAAGATCTGGTTTTGATGCTCTGTTTCTTTAAGTTAAAGTAAACACATTTAGTTTCCACAGCAATTTATCAGTAACATTTTGTTCATTCTTCTGGATTTGCTGACATAAATCTGTGGGCATAGTGCATGAACATATATTCATGTTGTACCTTTTCATTAAACTTGTTTCTAGAGCAAGAAACTACTGAAGGAGGACAAAGAAACAGCTCAAATACCTTTCCCCCCTTTTTTAGTACTTCGAGTCTTATTATGTTTCGGATTTGGTACTTTACTTTCCATGTCTCTAAAAGGAACATTCTTGATCAAACATGATTTTTTTTTTTAATTAAAAAAATAAAAGGTCTACATAACAATTAAATTATTT

Coding sequence (CDS)

ATGATTGGGTTTAGTGACACAGGCGGTGGAACGTATTGTGCTATTGCATCTCTCCGTTTAATGGGTTTCATTGAAGATGATCTTCTCTCTAGAGATAATTCTTCTTCCATAATAAACGCCCCGTTGTTGCTGGAGTGGTGCTTGCAGAAACAGGCAGCTGATGGAGGATTTCAAGGTCGACCTAACAAGCCCGCTGACACTTGTTATGCATTTTGGATTGGATCTACCTTGAGGATTTTAGGAGGCTTCGATCTCATTAATAAGAAGGCTTTGAAGGGATTTCTGCTGACGTGCCAATTTAAGTACGGTGGTTTCAGCAAGTTTCCGAGGGACTTTCCTGATTTATACCACACCTACTATGGATTTACTGCATTTAGCCTCTTGGAAGAACCCAACATCAACTCTCTGTTTGTTGAACTGGGAATAACAGAAGCTTCTGCCTGGAGGATTTAA

Protein sequence

MIGFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPNKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGFTAFSLLEEPNINSLFVELGITEASAWRI
Homology
[Close]
BLAST of Carg04507 vs. NCBI nr
Match: KAG7033046.1 (Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.2 bits (814), Expect = 3.9e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MIGFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGR 60
           MIGFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGR
Sbjct: 1   MIGFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGR 60

Query: 61  PNKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYY 120
           PNKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYY
Sbjct: 61  PNKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYY 120

Query: 121 GFTAFSLLEEPNINSLFVELGITEASAWRI 151
           GFTAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 121 GFTAFSLLEEPNINSLFVELGITEASAWRI 150

[Close]
BLAST of Carg04507 vs. NCBI nr
Match: XP_022922585.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 212 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 271

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 272 KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 331

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 332 TAFSLLEEPNINSLFVELGITEASAWRI 359

[Close]
BLAST of Carg04507 vs. NCBI nr
Match: KAG6602367.1 (Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 212 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 271

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 272 KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 331

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 332 TAFSLLEEPNINSLFVELGITEASAWRI 359

[Close]
BLAST of Carg04507 vs. NCBI nr
Match: XP_023516488.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 215 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 274

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 275 KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 334

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 335 TAFSLLEEPNINSLFVELGITEASAWRI 362

[Close]
BLAST of Carg04507 vs. NCBI nr
Match: XP_022990858.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 214 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 273

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGG DLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 274 KPADTCYAFWIGSTLRILGGLDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 333

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 334 TAFSLLEEPNINSLFVELGITEASAWRI 361

[Close]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match: O80642 (Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana OX=3702 GN=GGB PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-52
Identity = 95/140 (67.86%), Postives = 113/140 (80.71%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG TYCAIASLRLMG+I  DLLS D+SSSII+  LLL WCLQ+QA DGGFQGR N
Sbjct: 228 GSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTN 287

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KP+DTCYAFWIG+ L+++GG  LI+K AL+ FL++CQ KYGGFSKFP   PDLYH+YYG+
Sbjct: 288 KPSDTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGY 347

Query: 123 TAFSLLEEPNINSLFVELGI 143
           TAFSLLEE  ++ L  ELG+
Sbjct: 348 TAFSLLEEQGLSPLCPELGL 367

[Close]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match: Q5EAD5 (Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG T+C IASL LMG +E+    ++ +        +  WC+ +Q    G+ GRPN
Sbjct: 215 GLESHGGSTFCGIASLCLMGKLEEVFSEKELNR-------IKRWCIMRQ--QNGYHGRPN 274

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFK-YGGFSKFPRDFPDLYHTYYG 122
           KP DTCY+FW+G+TL++L  F   N +  + ++L+ Q +  GGF+K+P   PD  H Y+G
Sbjct: 275 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 334

Query: 123 FTAFSLLEEPNINSLFVELGITEASAWRI 151
               SL+EE  I  +   L ++  ++ R+
Sbjct: 335 ICGLSLMEESGICKVHPALNVSTRTSERL 354

[Close]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match: P53609 (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG T+C IASL LMG +E+    ++ +        +  WC+ +Q    G+ GRPN
Sbjct: 215 GLESHGGSTFCGIASLCLMGKLEEVFSEKELNR-------IKRWCIMRQ--QNGYHGRPN 274

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFK-YGGFSKFPRDFPDLYHTYYG 122
           KP DTCY+FW+G+TL++L  F   N +  + ++L+ Q +  GGF+K+P   PD  H Y+G
Sbjct: 275 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 334

Query: 123 FTAFSLLEEPNINSLFVELGITEASAWRI 151
               SL+EE  I  +   L ++  ++ R+
Sbjct: 335 ICGLSLMEESGICKVHPALNVSTRTSERL 354

[Close]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match: Q8BUY9 (Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus OX=10090 GN=Pggt1b PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG T+C IASL LMG +E+    ++ +        +  WC+ +Q    G+ GRPN
Sbjct: 215 GLESHGGSTFCGIASLCLMGKLEEVFSEKELNR-------IKRWCIMRQ--QNGYHGRPN 274

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFK-YGGFSKFPRDFPDLYHTYYG 122
           KP DTCY+FW+G+TL++L  F   N +  + ++L+ Q +  GGF+K+P   PD  H Y+G
Sbjct: 275 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 334

Query: 123 FTAFSLLEEPNINSLFVELGITEASAWRI 151
               SL+EE  I  +   L ++  ++ R+
Sbjct: 335 ICGLSLMEESGICKVHPALNVSTRTSERL 354

[Close]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match: P53610 (Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=Pggt1b PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG T+C IASL LMG +E+    ++ +        +  WC+ +Q    G+ GRPN
Sbjct: 215 GLESHGGSTFCGIASLCLMGKLEEVFSEKELNR-------IKRWCIMRQ--QNGYHGRPN 274

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFK-YGGFSKFPRDFPDLYHTYYG 122
           KP DTCY+FW+G+TL++L  F   N +  + ++L+ Q +  GGF+K+P   PD  H Y+G
Sbjct: 275 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 334

Query: 123 FTAFSLLEEPNINSLFVELGITEASAWRI 151
               SL+EE  I  +   L ++  ++ R+
Sbjct: 335 ICGLSLMEESGICKVHPALNVSTRTSERL 354

[Close]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match: A0A6J1E973 (Geranylgeranyl transferase type I subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111430546 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 212 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 271

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 272 KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 331

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 332 TAFSLLEEPNINSLFVELGITEASAWRI 359

[Close]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match: A0A6J1JUI6 (Geranylgeranyl transferase type I subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487623 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.2e-79
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN
Sbjct: 214 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 273

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGG DLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF
Sbjct: 274 KPADTCYAFWIGSTLRILGGLDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 333

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEPNINSLFVELGITEASAWRI
Sbjct: 334 TAFSLLEEPNINSLFVELGITEASAWRI 361

[Close]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match: A0A5A7TM93 (Geranylgeranyl transferase type I subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00260 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDN SSIIN PLLLEWCLQKQAADGGFQGRPN
Sbjct: 221 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNPSSIINVPLLLEWCLQKQAADGGFQGRPN 280

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGG D I+KKALK FLLTCQ KYGGFSKFP DFPDLYH+YYGF
Sbjct: 281 KPADTCYAFWIGSTLRILGGLDFIDKKALKAFLLTCQSKYGGFSKFPMDFPDLYHSYYGF 340

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEP+INSLFVELGIT+ SAWRI
Sbjct: 341 TAFSLLEEPDINSLFVELGITDVSAWRI 368

[Close]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match: A0A1S3C920 (Geranylgeranyl transferase type I subunit beta OS=Cucumis melo OX=3656 GN=LOC103498167 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDDLLSRDN SSIIN PLLLEWCLQKQAADGGFQGRPN
Sbjct: 221 GSESHGGGTYCAIASLRLMGFIEDDLLSRDNPSSIINVPLLLEWCLQKQAADGGFQGRPN 280

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGG D I+KKALK FLLTCQ KYGGFSKFP DFPDLYH+YYGF
Sbjct: 281 KPADTCYAFWIGSTLRILGGLDFIDKKALKAFLLTCQSKYGGFSKFPMDFPDLYHSYYGF 340

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEP+INSLFVELGIT+ SAWRI
Sbjct: 341 TAFSLLEEPDINSLFVELGITDVSAWRI 368

[Close]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match: A0A0A0KNR1 (Geranylgeranyl transferase type I subunit beta OS=Cucumis sativus OX=3659 GN=Csa_5G514460 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GGGTYCAIASLRLMGFIEDD LSRDN SSIIN PLLLEWCLQKQAADGGFQGRPN
Sbjct: 216 GSESHGGGTYCAIASLRLMGFIEDDPLSRDNPSSIINVPLLLEWCLQKQAADGGFQGRPN 275

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KPADTCYAFWIGSTLRILGG DLI+KKALK FLLTCQ KYGGFSKFP DFPDLYH+YYGF
Sbjct: 276 KPADTCYAFWIGSTLRILGGLDLIDKKALKAFLLTCQSKYGGFSKFPMDFPDLYHSYYGF 335

Query: 123 TAFSLLEEPNINSLFVELGITEASAWRI 151
           TAFSLLEEP+INSLFVELGIT+ SAWRI
Sbjct: 336 TAFSLLEEPDINSLFVELGITDVSAWRI 363

[Close]
BLAST of Carg04507 vs. TAIR 10
Match: AT2G39550.1 (Prenyltransferase family protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-53
Identity = 95/140 (67.86%), Postives = 113/140 (80.71%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G    GG TYCAIASLRLMG+I  DLLS D+SSSII+  LLL WCLQ+QA DGGFQGR N
Sbjct: 228 GSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTN 287

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQFKYGGFSKFPRDFPDLYHTYYGF 122
           KP+DTCYAFWIG+ L+++GG  LI+K AL+ FL++CQ KYGGFSKFP   PDLYH+YYG+
Sbjct: 288 KPSDTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGY 347

Query: 123 TAFSLLEEPNINSLFVELGI 143
           TAFSLLEE  ++ L  ELG+
Sbjct: 348 TAFSLLEEQGLSPLCPELGL 367

[Close]
BLAST of Carg04507 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G     G  +C + +L + G +             ++   L  W  ++Q   GG  GRP 
Sbjct: 180 GAESHAGQIFCCVGALAITGSLHH-----------VDKDSLGWWLCERQLKAGGLNGRPE 239

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQ-FKYGGFSKFPRDFPDLYHTYYG 122
           K AD CY++W+ S+L ++     I+K  L  F+L CQ    GG S  P D  D++HTY+G
Sbjct: 240 KLADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFG 299

Query: 123 FTAFSLLEEPNI 134
               SLLE P +
Sbjct: 300 VAGLSLLEYPGV 300

[Close]
BLAST of Carg04507 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEWCLQKQAADGGFQGRPN 62
           G     G  +C + +L + G +             ++   L  W  ++Q   GG  GRP 
Sbjct: 179 GAESHAGQIFCCVGALAITGSLHH-----------VDKDSLGWWLCERQLKAGGLNGRPE 238

Query: 63  KPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQ-FKYGGFSKFPRDFPDLYHTYYG 122
           K AD CY++W+ S+L ++     I+K  L  F+L CQ    GG S  P D  D++HTY+G
Sbjct: 239 KLADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFG 298

Query: 123 FTAFSLLEEPNI 134
               SLLE P +
Sbjct: 299 VAGLSLLEYPGV 299

[Close]
BLAST of Carg04507 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 41/136 (30.15%), Postives = 63/136 (46.32%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEW-CLQKQAADGGFQGRP 62
           G     G  +C + +L + G +             ++  LL  W C ++    GG  GRP
Sbjct: 175 GAESHAGQIFCCVGALAITGNLHR-----------VDKDLLGWWLCERQDYESGGLNGRP 234

Query: 63  NKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQ-FKYGGFSKFPRDFPDLYHTYY 122
            K  D CY++W+ S+L ++     I K  L  F+L  Q    GG S  P    D++HTY+
Sbjct: 235 EKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYF 294

Query: 123 GFTAFSLLEEPNINSL 137
           G    SLLE P + ++
Sbjct: 295 GVAGLSLLEYPGVKTI 299

[Close]
BLAST of Carg04507 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 41/136 (30.15%), Postives = 63/136 (46.32%), Query Frame = 0 

Query: 3   GFSDTGGGTYCAIASLRLMGFIEDDLLSRDNSSSIINAPLLLEW-CLQKQAADGGFQGRP 62
           G     G  +C + +L + G +             ++  LL  W C ++    GG  GRP
Sbjct: 175 GAESHAGQIFCCVGALAITGNLHR-----------VDKDLLGWWLCERQDYESGGLNGRP 234

Query: 63  NKPADTCYAFWIGSTLRILGGFDLINKKALKGFLLTCQ-FKYGGFSKFPRDFPDLYHTYY 122
            K  D CY++W+ S+L ++     I K  L  F+L  Q    GG S  P    D++HTY+
Sbjct: 235 EKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTYF 294

Query: 123 GFTAFSLLEEPNINSL 137
           G    SLLE P + ++
Sbjct: 295 GVAGLSLLEYPGVKTI 299

The following BLAST results are available for this feature:
BLAST of Carg04507 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033046.13.9e-83100.00Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma ... [more]
XP_022922585.13.4e-7997.30geranylgeranyl transferase type-1 subunit beta [Cucurbita moschata][more]
KAG6602367.13.4e-7997.30Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma ... [more]
XP_023516488.13.4e-7997.30geranylgeranyl transferase type-1 subunit beta [Cucurbita pepo subsp. pepo][more]
XP_022990858.11.7e-7896.62geranylgeranyl transferase type-1 subunit beta [Cucurbita maxima][more]
BLAST of Carg04507 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O806423.7e-5267.86Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana OX=3702 G... [more]
Q5EAD54.3e-2436.24Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B P... [more]
P536094.3e-2436.24Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B... [more]
Q8BUY94.3e-2436.24Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus OX=10090 GN=Pggt1... [more]
P536104.3e-2436.24Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=... [more]
BLAST of Carg04507 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E9731.7e-7997.30Geranylgeranyl transferase type I subunit beta OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1JUI68.2e-7996.62Geranylgeranyl transferase type I subunit beta OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A5A7TM931.5e-7289.19Geranylgeranyl transferase type I subunit beta OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3C9201.5e-7289.19Geranylgeranyl transferase type I subunit beta OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0KNR13.3e-7289.19Geranylgeranyl transferase type I subunit beta OS=Cucumis sativus OX=3659 GN=Csa... [more]
BLAST of Carg04507 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39550.12.6e-5367.86Prenyltransferase family protein [more]
AT5G12210.12.6e-1632.58RAB geranylgeranyl transferase beta subunit 1 [more]
AT5G12210.22.6e-1632.58RAB geranylgeranyl transferase beta subunit 1 [more]
AT3G12070.14.5e-1330.15RAB geranylgeranyl transferase beta subunit 2 [more]
AT3G12070.24.5e-1330.15RAB geranylgeranyl transferase beta subunit 2 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 7..22
e-value: 0.16
score: 11.7
coord: 42..81
e-value: 5.1E-10
score: 38.9
coord: 86..128
e-value: 6.1E-8
score: 32.3
NoneNo IPR availableGENE3D1.50.10.20coord: 6..143
e-value: 3.3E-45
score: 156.7
NoneNo IPR availablePANTHERPTHR11774:SF4GERANYLGERANYL TRANSFERASE TYPE-1 SUBUNIT BETAcoord: 7..145
IPR045089Prenyltransferase subunit betaPANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 7..145
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 7..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04507-RACarg04507-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009733 response to auxin
biological_process GO:0009414 response to water deprivation
cellular_component GO:0005953 CAAX-protein geranylgeranyltransferase complex
molecular_function GO:0004662 CAAX-protein geranylgeranyltransferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008318 protein prenyltransferase activity