Carg00681 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTACTTGGCATCACAGCTGCCATAGCCACCTTCATTTCAACCTCAAAGGCCGAATAGCACAATCTGATCATACTAAAATGGCAACCCCATGAGCCCAAGCTTCCCAAATTTTCAGCCCCAAATAATCTTCCGCTATTAAACCCACTCCTTCTTCTTCTTCTGTTTCTTGCTGCGTCGGTTATGGCTCTGTCGCCCTTGGATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGGTGAGCTTAGCAATGTCAGTTCCAAGTAATTTCCCATTTTAGTTTTCTTCTCATGATCAAAATTTTCAACCATTGCCTTATATGACTGCTTGTTTCTATCCAACTTCTCTTGCAATGCTTGAAATTCCCTCATATGAATCATTATATGATGTGTTGCAAGTTGCTAATGAATCGTTTAATTTTTCCCCCTCCACGCCCAAAGGATTTTATGAATTGTTTTTGGCTTATATTACCTTTCAAATACAGGTTCACTAAACTGCAAGGTTTGCTGATAGGATAGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG CTACTTGGCATCACAGCTGCCATAGCCACCTTCATTTCAACCTCAAAGGCCGAATAGCACAATCTGATCATACTAAAATGGCAACCCCATGAGCCCAAGCTTCCCAAATTTTCAGCCCCAAATAATCTTCCGCTATTAAACCCACTCCTTCTTCTTCTTCTGTTTCTTGCTGCGTCGGTTATGGCTCTGTCGCCCTTGGATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG ATGCCAACGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCCAACTATGTGCCTTCCGGGCTTGGCTATTGCTTCATCGCCATGGGATCCGATGAGGAAGTTCCTTATGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGCGTATTGGTGTTGGCAAG MPTLRELNTMPLLENPFASSNYVPSGLGYCFIAMGSDEEVPYVFDSSYKRARPLTLRIGVGK Homology
BLAST of Carg00681 vs. NCBI nr
Match: KAG7034182.1 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg00681 vs. NCBI nr
Match: XP_008440633.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >XP_008440634.1 PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >XP_008440635.1 PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucumis melo] >KAA0036279.1 photosynthetic NDH subunit of lumenal location 4 [Cucumis melo var. makuwa] >TYK12673.1 photosynthetic NDH subunit of lumenal location 4 [Cucumis melo var. makuwa]) HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10 Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0
BLAST of Carg00681 vs. NCBI nr
Match: XP_022133129.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Momordica charantia]) HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10 Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Carg00681 vs. NCBI nr
Match: XP_038882610.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882611.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882612.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882613.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida]) HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg00681 vs. NCBI nr
Match: KAG6604018.1 (hypothetical protein SDJN03_04627, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy Swiss-Prot
Match: Q9SCY3 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL4 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07 Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A1S3B1J6 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103484993 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11 Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A5A7T4H4 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002610 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11 Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1BV36 (Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111005803 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10 Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1KSN7 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111497240 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10 Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg00681 vs. ExPASy TrEMBL
Match: A0A6J1HHY0 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111463138 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10 Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg00681 vs. TAIR 10
Match: AT4G39710.1 (FK506-binding protein 16-2 ) HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08 Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0
BLAST of Carg00681 vs. TAIR 10
Match: AT4G39710.2 (FK506-binding protein 16-2 ) HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08 Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0
BLAST of Carg00681 vs. TAIR 10
Match: AT5G45680.1 (FK506-binding protein 13 ) HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04 Identity = 25/71 (35.21%), Postives = 30/71 (42.25%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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