Carg19523 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGCCCATTTCGATTCCCAATTCAGAGAGAGAGAGAGAGAGAGATCCTTCAAAATTTTCAATTCGTCAAGCAATCCGATCGTCGTTGACCGACGTTGTCTTATCCCTCTCCGATTTGACCCCTTTTCCGACAGCTTCCCATTAAAATCAATATCCTGAAGAAGGTTCATCCACGAATCCCTGTTTGGTTTTTTTTTGTTTTCTCCACGATTTTTGGATGTCATCATCCCTCCACGGACTACTGAATTGACTCGAGGCTCCAATTCGGGGGTTGTTGAGGGTAATTTTTCTGTCTCTGTAATGGGATCCTCCTGCTCTACTCTTTTTTAATTGTTTTTCAGTGGTTTGTTTATGAATCTAATGAGATGGGTATAGCTGTGTCCTTTTCAATTCTATTATGTTCATGATTCTGTTCTATTCCTTTCTGCTCCAATGCCCTTTTTCTTTTGAATGATACAGTCATTGGCTCCTTGTTTATTTGTTTGTTGGTTGATGAACTTTGAAGTTTGTGTCAACGTTGTAACTTTTAAGGTTGTTTTAGCACTGTGATAAAAGTGGAGCTAGTCTTTGTTTGGTGTCTTTTTCCCAGAATTTGTAACATGTCTGTGAATTGGAAACATTTGCAATAGAAAATGAGTTAAATGTTATGTTTTCTTCCATTGATAGCATATGGTTATACTGATATTTTCTTATCGTTATTTCAGGCTAACCTGTGGTACCTAGGACACTTCGAACATCATCTGCACTTGGACCGCCAAATGGGACTTTGTGCTAGTAAGGTAAGAGCCATTTGGAACATTTAATCTAGTAATGTTAGTAGAGGACTTTGTGGTGGTTTGTCGTGTTGGATTGATGTTTGTACCTGGAACTTTTTTTTTTAATCAATTGTGATACCTAAATAGAATATTATGGATCAGGCCGAAGTTATGAGTTAGAACGTTGATGAGTAACGGGGGAATGAATTTGGCTAGAGCCTGGTTCTGTGGGGTTCAAAGGAGGACTAGATATGTGAGATCCCACATCGGTTGGAAAGGAGAACGAAACATTCTTTATCCGTGTGGAAACTTCTCCCTAGCAGACGTGGTTTAAAAACCTTAAGGGGAAGCTTGAAAAGAAAAGCCCAAAGATGGCACTATCTGTTAGCGGTGGGTTGGGCTGTTATAAATGGTATCAAAGCTAGACATGGGATGATGTGCAGTGAGGAGGTTGAGTTTCGATGTGGGGTGGACACGAGGCGGTGTGCCAACAAAGACGCTGGGCCTCGAAGGGGGTGTATTGGGGGGTCCCACATCGATTGGAGAAGGAAACGAGTGCCAGTGAGGGCGCTGGGTCCTGAAGGGGGGTGGATTGTGAGATCCCGCATCGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTAAGGGGAAGCCTGAAAGGGAAAGCCCAAAGATGACACTATCTGCTAGCGGTGGGTTTGGGCTGTTATAAATGGTATCAGAGCTAGACATGGGGCAATGTGCAGTGAGGAGGTTGAGTCCTGAAGGGGGGTGGACACAAGGCGGTGTGCCAACAAGGACACTGGGCCTCAAAGGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGAACGAAACATTCTCTATAAGGTGTGGAAACCTCTTCTTAGCAGACGTGTTTTAAAAACCTTGAAGGAAAGCCCAAAGAGGACAATATCTGCTAGAGGTGGGCTTGGGCTGTGCTTGGCCAACAAATATTGTTGAAGAAGGTGCTTTATAATCATTAGCATTGCACCCTAGAAGGGTACTATTCAACATTTTCTACAGTTATACACTGACTTCAGCAATGCCCCAAAACTTCGATTCCACCCGAGCGTTCGTCAGCTCCTCCTCGTAATTTTGTGTTGACGATCCTATAAAATAAAAACTACGAAAAAGGATCATTTCTGAGATTTCGGCGCACTGCCTGTTTTATGCTCGTTAACGTTCATCTAACTCGGAAGTTTTTGTGTTCCTTGTTTCTAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTAAGATTTTGATTAATTTATTGCCTTTGAGCACTGCTGTTGTTTCTGGATGTTATCTCGTAGATAAATCAGGCCCGTTCGTGTTCGTGTTCGTGTTCGTTTCTTTAATTATCTGATAAAAAACGGAACGACTCAGAGAGTATAATATATAGTCTATTTTATGTCATGTCCTTATTTTGTTGCTCAGTTCTTTGCAAGGGAGGTGGGCTTGATCCTCCCCTGCCTTTGGTAATGAAAATTCTCTTATCAAAATGGGTTTAATCCTTTCGTAATCGAGATTATGCGTCGACAGGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGTGAGTAATGAAGTACAATATCATTTATGGAAGAATTTATTCAACTCTTTTTTTCATTCTGGTTCTTGTACGTTGGGAATGCATTGTTTTTGTCAATCTGAACATAGCTCATTTGATAAGATACTAATTATCATCATCAGCCCAGTAGATATGTGAGATCTCACTTCGGTTGGAAAGTGGAATAAAACATTACTTATAAGGGTGTGGAAGCATCTCCCTAGTAGACACATTTAAAATCGTGAGGCTGACGCGATACGTAACAGGCCAAAGTAGATAATATTTGCTAATGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAGACATTGTGTAAGGACCCAAATCCACTGCTAGTAGATATTGTCCTCTTTAGGCTTTCCCTTTCGGGCTTCCTCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAGGTTTCCATACCCTTATAAATGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATTACAATGAATGTGGATCTGGGTCTTTACAAATGGTATCAGAGCCAGTCATCGGACGATTTGTCAGCCTTCTCGCTGTTCCTCGAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGAACGCTGGGTCCCAAAGGGGGTGGATTTGGTGGTAGTCCCACATCGATTAGAGAAAGGAATGAGTGTCAGCAAAGACGCTGGGTCCCAAAGGGGGGTGGATTGTGTTGTCCCACATTGGTTGAGGAGAATAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGAAAGCCCGAAAGGGAAAGCCCAAAGAGGACAAGATCTACTAGCGGTGGATTTGGGTCGTTACACATTGGGCAGTGTGCCAGCGAGGACGTTGGGCCCCCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTAGAAAAGGGAACGAAACATTTCTTATAAGGGTGTGGAAACATCTCCCTGGTAGACATGTTTTAAAACTGTGAAGTGCGATACATAATGGTCTAAAGTGGACAATATCTACTACTGGTGGACTTGAGCTGTTACAATTGGTATTAGAGCCAGACACCGAGCTATGTGCCAGCGAGAACGCTGGCCCCCAAGGAGGGTGGATTGTGAGATGAAGCTCGTCTAATTCACTACCCCTCCGTTCACTTCACAATCAGCTATAGATTAAGCTTGTTTGGGCTACATTTCTCAGCATATGCTTTGGGTGTTGCAGGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA CGCCCATTTCGATTCCCAATTCAGAGAGAGAGAGAGAGAGAGATCCTTCAAAATTTTCAATTCGTCAAGCAATCCGATCGTCGTTGACCGACGTTGTCTTATCCCTCTCCGATTTGACCCCTTTTCCGACAGCTTCCCATTAAAATCAATATCCTGAAGAAGGTTCATCCACGAATCCCTGTTTGGTTTTTTTTTGTTTTCTCCACGATTTTTGGATGTCATCATCCCTCCACGGACTACTGAATTGACTCGAGGCTCCAATTCGGGGGTTGTTGAGGGCTAACCTGTGGTACCTAGGACACTTCGAACATCATCTGCACTTGGACCGCCAAATGGGACTTTGTGCTAGTAAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA ATGGGACTTTGTGCTAGTAAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPELELKVTALADSLPPNQ Homology
BLAST of Carg19523 vs. NCBI nr
Match: KAG7033711.1 (hypothetical protein SDJN02_03436, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of Carg19523 vs. NCBI nr
Match: XP_022950143.1 (thioredoxin H-type-like [Cucurbita moschata] >XP_022950144.1 thioredoxin H-type-like [Cucurbita moschata] >XP_023543289.1 thioredoxin H-type-like [Cucurbita pepo subsp. pepo] >XP_023543290.1 thioredoxin H-type-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of Carg19523 vs. NCBI nr
Match: KAG6603527.1 (Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of Carg19523 vs. NCBI nr
Match: XP_022978310.1 (thioredoxin H-type-like [Cucurbita maxima] >XP_022978312.1 thioredoxin H-type-like [Cucurbita maxima]) HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Carg19523 vs. NCBI nr
Match: XP_038883656.1 (thioredoxin H9 [Benincasa hispida] >XP_038883657.1 thioredoxin H9 [Benincasa hispida]) HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63 Identity = 120/138 (86.96%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: P85801 (Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 9.6e-55 Identity = 96/137 (70.07%), Postives = 116/137 (84.67%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9C9Y6 (Thioredoxin H9 OS=Arabidopsis thaliana OX=3702 GN=TRX9 PE=1 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 6.9e-53 Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9AS75 (Thioredoxin H4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0168200 PE=2 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 2.5e-47 Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q0DKF1 (Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 2.1e-46 Identity = 85/132 (64.39%), Postives = 108/132 (81.82%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9LXZ8 (Putative thioredoxin H10 OS=Arabidopsis thaliana OX=3702 GN=At3g56420 PE=3 SV=2) HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29 Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A6J1GEY7 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453320 PE=4 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 3.6e-73 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A6J1IPQ7 (thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111478337 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A5A7SL29 (Thioredoxin H-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00370 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63 Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A0A0L068 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334700 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63 Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A1S3CKE7 (thioredoxin H-type OS=Cucumis melo OX=3656 GN=LOC103501473 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63 Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0
BLAST of Carg19523 vs. TAIR 10
Match: AT3G08710.1 (thioredoxin H-type 9 ) HSP 1 Score: 208.0 bits (528), Expect = 4.9e-54 Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Carg19523 vs. TAIR 10
Match: AT3G08710.2 (thioredoxin H-type 9 ) HSP 1 Score: 208.0 bits (528), Expect = 4.9e-54 Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Carg19523 vs. TAIR 10
Match: AT3G56420.1 (Thioredoxin superfamily protein ) HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30 Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 0
BLAST of Carg19523 vs. TAIR 10
Match: AT2G40790.1 (C-terminal cysteine residue is changed to a serine 2 ) HSP 1 Score: 125.9 bits (315), Expect = 2.4e-29 Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 0
BLAST of Carg19523 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 ) HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26 Identity = 48/101 (47.52%), Postives = 75/101 (74.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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