Carg28058 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28058
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9938095 .. 9938682 (-)
RNA-Seq ExpressionCarg28058
SyntenyCarg28058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCTTCCCTCTCTACTCTCTTCTGAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAGTTCAGCTCCATTCTTTAATCTTCTTGCATTTTTTATTCATGTTTTTTCTTCTCTGACGGCCACTGCTTCTCATTTTTTCTCTTTGCCTTTCTGTATTTTCTCATTCCGTCGATGCCCTTTGTATCGTCGATTCGTTGAGCAAAGATGCTCGGTTAAAACTAAACTGAGTTGACGGACCACTGAGCCTCAGTAGGAATTGCAGTAGAATGCCAAGTTTGCTTTTTTTTTTTCTTGCCACTGATTGAATACTACAAACCTCTGGGATCTTCTTGGAATTTTCTACTCAGTATATATCATCCATGTTCTATGACGTAGTGAAAGTATAGAAATTCATAATCTGAACGATGAACTGCAGATTGTTGGGGTAACTTGTGCAGAAATTGGCAGCAGTGGCCTTGGTGTTTGCACTAG

mRNA sequence

AACCTTCCCTCTCTACTCTCTTCTGAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAAAATTGGCAGCAGTGGCCTTGGTGTTTGCACTAG

Coding sequence (CDS)

AACCTTCCCTCTCTACTCTCTTCTGAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAAAATTGGCAGCAGTGGCCTTGGTGTTTGCACTAG

Protein sequence

NLPSLLSSEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATKNWQQWPWCLH
Homology
[Close]
BLAST of Carg28058 vs. NCBI nr
Match: KAG7036356.1 (hypothetical protein SDJN02_03161, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  NLPSLLSSEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATKN 60
          NLPSLLSSEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATKN
Sbjct: 1  NLPSLLSSEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATKN 60

Query: 61 WQQWPWCLH 70
          WQQWPWCLH
Sbjct: 61 WQQWPWCLH 69

[Close]
BLAST of Carg28058 vs. NCBI nr
Match: KAG6606418.1 (hypothetical protein SDJN03_03735, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 5.9e-18
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 8  SEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK 60
          S+FTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK
Sbjct: 16 SQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK 67

The following BLAST results are available for this feature:
BLAST of Carg28058 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036356.11.4e-30100.00hypothetical protein SDJN02_03161, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606418.15.9e-1898.08hypothetical protein SDJN03_03735, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg28058 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28058 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28058 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28058-RACarg28058-RAmRNA