Carg08485 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08485
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SWR1 complex subunit 2
Location	Carg_Chr02: 5427807 .. 5429756 (+)
RNA-Seq Expression	Carg08485
Synteny	Carg08485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGGAATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAGAAAATCATCGTAATCCGCTACCACTTTTCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCCATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGTACCGGACTACTTGGCTACCTTTTCTTTTCTTTTTTTAGGGATGGATTTATTGTGGACTGGTGACTTACTGATGCAAGATGTTTCAAATTGTATGGATTTGTGAATGGGGTATTTTAATGGCTACAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGTATTTCTCGAGTATCTTTTTCCCTTCTTTTGAACGATATGGGGTTTTACTCTAATTTTTCTTTGATTTCGGTGGTTAATGGCGAAATCATTACTGCAATTATGAGATGTTGTTCCGTTTCTCCCCCATTTCGTATACACGCGGTTGCTTTTAGGTTATAAAAGTTCAATTTCGTAGATTTTGCTGAAATTTATCAGTGTATACATCCACTTAGATTTGGTTATACATTTGGATTTCCGTCTTGCAATGCCATTGTCTGGATGATGGGGCTTTGGTTTTGACTGAATCAAATACTTTCCTGAACTTGTCAATCCTCGAAATTTGTTGCAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGGTTTGCTATTCTCTGAAGTGCTTGGCTGTTGTATTAGATATATCTGTTTTCTGTTTTAAAATTATGTTTTCTTATAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGAATACTTGAATATTTGATTTGTAGGATGAAGACCAAACGTTGTTCATTAGAGTAGCTTGAGTTTTTCTTGAAGGCAGTTTCTTGATTGAATAGGGTGATGCTATGATGAAGTGGGAACACTTCATTTTGGTTCATATATCCTTAAGCTTCTTGAAAAACTTTCATGATCCTATGGATTCTTTAGTCAGCCATTATTCTTTTCATGTCAATGACTAATCATTTCAATCTTTAGATCCATTCTGTGTCCAAGAAGAACACCAAAAATACAAAACAAAATCTTTTGAGTTACCCAGAATGAGTTTGTTCAGGAGTAACTTTAAATTTTATGACACCCAAAATTTGGTTCTCCGTCCGTTTGGTTGTAGTGGTGTCTGGGGACATAAAATCTGTAATGGTTCATGATTCAAGCCCACCGGCAAATATTGTCCTCTTTGAATTTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAATGTGTTTGCTAAGGAGGGGTTTCCACACCCTTATAAAGA

mRNA sequence

AAACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGGAATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAGAAAATCATCGTAATCCGCTACCACTTTTCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCCATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGAATACTTGAATATTTGATTTGTAGGATGAAGACCAAACGTTGTTCATTAGAGTAGCTTGAGTTTTTCTTGAAGGCAGTTTCTTGATTGAATAGGGTGATGCTATGATGAAGTGGGAACACTTCATTTTGGTTCATATATCCTTAAGCTTCTTGAAAAACTTTCATGATCCTATGGATTCTTTAGTCAGCCATTATTCTTTTCATGTCAATGACTAATCATTTCAATCTTTAGATCCATTCTGTGTCCAAGAAGAACACCAAAAATACAAAACAAAATCTTTTGAGTTACCCAGAATGAGTTTGTTCAGGAGTAACTTTAAATTTTATGACACCCAAAATTTGGTTCTCCGTCCGTTTGGTTGTAGTGGTGTCTGGGGACATAAAATCTGTAATGGTTCATGATTCAAGCCCACCGGCAAATATTGTCCTCTTTGAATTTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAATGTGTTTGCTAAGGAGGGGTTTCCACACCCTTATAAAGA

Coding sequence (CDS)

ATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGA

Protein sequence

MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES

Homology

[Close]

BLAST of Carg08485 vs. NCBI nr
Match: KAG7035562.1 (SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI
Sbjct: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
           VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK
Sbjct: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS
Sbjct: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180

Query: 181 AVVREAERDVIRSHNEGES 200
           AVVREAERDVIRSHNEGES
Sbjct: 181 AVVREAERDVIRSHNEGES 199

[Close]

BLAST of Carg08485 vs. NCBI nr
Match: KAG6605652.1 (SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-73
Identity = 167/196 (85.20%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI
Sbjct: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
           VDEHDSDFSED                             DSEPEEEAENEADERTQTKK
Sbjct: 61  VDEHDSDFSED-----------------------------DSEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS
Sbjct: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 167

Query: 181 AVVREAERDVIRSHNE 197
           AVVREAERDVIRSHNE
Sbjct: 181 AVVREAERDVIRSHNE 167

[Close]

BLAST of Carg08485 vs. NCBI nr
Match: XP_038907261.1 (SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907263.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907264.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907265.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDAPVFLDRSSRLTRGKRMTKLLDEEVEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKNKNKKRVVSKVEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. NCBI nr
Match: XP_038907266.1 (SWR1 complex subunit 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDAPVFLDRSSRLTRGKRMTKLLDEEVEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKNKNKKRVVSKVEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. NCBI nr
Match: XP_022970136.1 (SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 6.4e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. ExPASy Swiss-Prot
Match: F4IP06 (SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-26
Identity = 85/189 (44.97%), Postives = 113/189 (59.79%), Query Frame = 0


Query: 11  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSE 70
           VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++
Sbjct: 10  VFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDSDFND 69

Query: 71  DVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSS 130
           D                             + EP+  A NE + R   KKRL+ PGKT+S
Sbjct: 70  D-----------------------------EPEPDAVAVNEKELRDLPKKRLIYPGKTAS 129

Query: 131 KDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVR 190
           K   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR
Sbjct: 130 KKKKKKTKVVSQLEYIPGDEKPGEELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVR 169

Query: 191 EAERDVIRS 194
           +AERD +R+
Sbjct: 190 QAERDALRA 169

[Close]

BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1HZS7 (SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1EM84 (SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.1e-57
Identity = 135/193 (69.95%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDASVFLDRSSRLTRGKRMTKLLDDELEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEADERTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADERTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTPSKNKNKKRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A6J1DZB8 (SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.9e-57
Identity = 134/193 (69.43%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI
Sbjct: 1   METTKEEDAPVFLDRSSRLTRGKRMTRLLDEEVEEDELFWNQEALKEEENDDEYEEEPEI 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEAD+RTQTKK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEADDRTQTKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKTSSK  NKKRAVSKIE  SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKTSSKKKNKKRAVSKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 164

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 164

[Close]

BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A5A7UJC3 (SWR1 complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00240 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.5e-56
Identity = 135/193 (69.95%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEEDVPVFLDRSSRLTRGKRMTKLLDEEAEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEA+ERTQ KK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEAEERTQMKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKT-SKNKNKKRAVSKIEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 163

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 163

[Close]

BLAST of Carg08485 vs. ExPASy TrEMBL
Match: A0A1S3CUJ8 (SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.6e-56
Identity = 135/193 (69.95%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEI 60
           MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+
Sbjct: 1   MDSSKEDDVPVFLDRSSRLTRGKRMTKLLDEEAEEDELFWNQDALKEDEVDDEYEEEPEV 60

Query: 61  VDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKK 120
            DE DSDF+ED                             +SEPEEEAENEA+ERTQ KK
Sbjct: 61  ADEFDSDFNED-----------------------------ESEPEEEAENEAEERTQMKK 120

Query: 121 RLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTS 180
           RL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS
Sbjct: 121 RLIFPGKT-SKNKNKKRAVSKIEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTS 163

Query: 181 AVVREAERDVIRS 194
            +VR+AERD IR+
Sbjct: 181 VIVRQAERDAIRA 163

[Close]

BLAST of Carg08485 vs. TAIR 10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding )

HSP 1 Score: 119.4 bits (298), Expect = 3.3e-27
Identity = 85/189 (44.97%), Postives = 113/189 (59.79%), Query Frame = 0


Query: 11  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSE 70
           VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++
Sbjct: 10  VFLDRTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDSDFND 69

Query: 71  DVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAENEADERTQTKKRLVSPGKTSS 130
           D                             + EP+  A NE + R   KKRL+ PGKT+S
Sbjct: 70  D-----------------------------EPEPDAVAVNEKELRDLPKKRLIYPGKTAS 129

Query: 131 KDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVR 190
           K   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR
Sbjct: 130 KKKKKKTKVVSQLEYIPGDEKPGEELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVR 169

Query: 191 EAERDVIRS 194
           +AERD +R+
Sbjct: 190 QAERDALRA 169

The following BLAST results are available for this feature:

BLAST of Carg08485 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035562.1	1.1e-98	100.00	SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605652.1	1.3e-73	85.20	SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038907261.1	4.0e-59	70.98	SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 compl...	[more]
XP_038907266.1	4.0e-59	70.98	SWR1 complex subunit 2 isoform X2 [Benincasa hispida]	[more]
XP_022970136.1	6.4e-57	69.95	SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2...	[more]

BLAST of Carg08485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IP06	4.6e-26	44.97	SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1	[more]

BLAST of Carg08485 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZS7	3.1e-57	69.95	SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1	[more]
A0A6J1EM84	3.1e-57	69.95	SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1	[more]
A0A6J1DZB8	6.9e-57	69.43	SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1	[more]
A0A5A7UJC3	4.5e-56	69.95	SWR1 complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A1S3CUJ8	7.6e-56	69.95	SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1	[more]

BLAST of Carg08485 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36740.1	3.3e-27	44.97	sequence-specific DNA binding transcription factors;DNA binding;DNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008895	Vps72/YL1 family	PFAM	PF05764	YL1	coord: 15..184 e-value: 9.7E-10 score: 39.0
IPR008895	Vps72/YL1 family	PANTHER	PTHR13275	YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1	coord: 3..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08485-RA	Carg08485-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043486	histone exchange
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0005634	nucleus