Carg21390 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21390
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	high mobility group B protein 9-like
Location	Carg_Chr01: 13029978 .. 13032189 (-)
RNA-Seq Expression	Carg21390
Synteny	Carg21390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATAGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGTGAGACACCTTTCTTCTTCTTCTTCTTCTACTTTTTCTTTTTCTGACTTGGTAAACGAAGTAAAATGGCGCTGCACAGCCAAAAGACACCATTTTTTTACTCTTTTCCTTCCTCTAATTTCTAAGAATCAATCTTTTTCCAGTAAAAAATATGAAGAAATCGAAGTTTTTAACTTTTACTTTCCTTTCCTTGAATACTTAAAAAGGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTAAAGTTTGGCCCTTCGTCTTCCGTTTTTCAACAACAAAGCTCTTGGTTTGAGAAAATGGAGTGATTTTGACTATGCAAGTTCCTATTTCATGGCGGTTTAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGGTCCCTTTTTGTTCTCCCCTTCCATTTTTCCTTTTTTTACTTTATCCGTTATTTTCCATATCGGATTTTGCTGTAAATCTGAGTTGGGTTTTGTCCTTTTCTTCTTCTACAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAAGTAATAAAAGTAGAACAGTTGTTGCCACCAATGCCTTCTATTTAACTGATTCGATTCGATAAATTATTGGGAGGGAGGGACCGTAGAGCTGAGTGGCTACACCAAATAAATTCTCCCTACTATGTGTGTCTGCGTTGGTTTTTCATTCAGTTTTGTTCCATTCCTACTTTGCATCTCTTCATATTTGTGTTTTTTTTTTAACCTAAGTGGTTGATGTTTTTCAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTATGTCTGTCTAGCTTTTTACCAAAGTTCCAACAGTTCTTGACTTTTTGTGGGTTTGATTAAATGGTTGTCTCTGCTCCGATAGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAACAAAGAAGGAAGAGAATTCAGCAGTTTAGGTCTTTTTTTGGGTCTCTTATCAAGTTATATGATATATAAACTTTGTATCATATCCTTCTAACTTTACATGGCAAATCATAGGTTCTTATATCCAAGTGCTTGGCCTCAAACTGCTGCTACACACTACAATGTCACTATTGGAACTCTCATACTATGCTGCTACACACTAGATTCTTAGAACTTTCAACTTTGAAATGACAGAGGAATGTGCCCTTTTAACTTCGTTTTTGTTTCTTATTCCATCAGTGGTCATGATGAAGCCAACCAAATGAGCCTGAGAGAGAGGCTTCTTCTGTGTCATGTGCTACAATATTTGAATATTAACAAACATAGTTTAAAAGAAAGTAAACAAAGGCACAGAAGCAAATGAGTGAATGTTAGAAACAGTTGAGATCATATATGCATAAGAACGTTAGAATTTTCATCAACTGAGTCATGTAA

mRNA sequence

ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATAGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAATTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAACAAAGAAGGAAGAGAATTCAGCAGTTTAGGTCTTTTTTTGGGTCTCTTATCAAGTTATATGATATATAAACTTTGTATCATATCCTTCTAACTTTACATGGCAAATCATAGGTTCTTATATCCAAGTGCTTGGCCTCAAACTGCTGCTACACACTACAATGTCACTATTGGAACTCTCATACTATGCTGCTACACACTAGATTCTTAGAACTTTCAACTTTGAAATGACAGAGGAATGTGCCCTTTTAACTTCGTTTTTGTTTCTTATTCCATCAGTGGTCATGATGAAGCCAACCAAATGAGCCTGAGAGAGAGGCTTCTTCTGTGTCATGTGCTACAATATTTGAATATTAACAAACATAGTTTAAAAGAAAGTAAACAAAGGCACAGAAGCAAATGAGTGAATGTTAGAAACAGTTGAGATCATATATGCATAAGAACGTTAGAATTTTCATCAACTGAGTCATGTAA

Coding sequence (CDS)

ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGACGTGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCTGACCCCATAGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGGTGACAACCTTTCACATTCCTTGCTTTTCTTCGTGGGGTCAATTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGATCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTGATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGCTGATATTCAGGCAACTAACTGTTCAAAACATGGAGAGTAA

Protein sequence

MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE

Homology

[Close]

BLAST of Carg21390 vs. NCBI nr
Match: KAG7037933.1 (High mobility group B protein 9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 692.6 bits (1786), Expect = 1.7e-195
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 336

[Close]

BLAST of Carg21390 vs. NCBI nr
Match: KAG6608616.1 (High mobility group B protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 654.8 bits (1688), Expect = 3.9e-184
Identity = 321/336 (95.54%), Postives = 322/336 (95.83%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 322

[Close]

BLAST of Carg21390 vs. NCBI nr
Match: XP_022940773.1 (high mobility group B protein 9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 653.3 bits (1684), Expect = 1.1e-183
Identity = 320/336 (95.24%), Postives = 321/336 (95.54%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRK DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKTDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 322

[Close]

BLAST of Carg21390 vs. NCBI nr
Match: XP_023525872.1 (high mobility group B protein 9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 648.3 bits (1671), Expect = 3.7e-182
Identity = 318/336 (94.64%), Postives = 320/336 (95.24%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNG+VDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGNVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRH GRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHVGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQATNCSK GE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKRGE 322

[Close]

BLAST of Carg21390 vs. NCBI nr
Match: XP_022982046.1 (high mobility group B protein 9-like [Cucurbita maxima] >XP_022982047.1 high mobility group B protein 9-like [Cucurbita maxima])

HSP 1 Score: 642.1 bits (1655), Expect = 2.6e-180
Identity = 316/336 (94.05%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNG VDKHYPPALA+HDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGGVDKHYPPALASHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPS+LRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSNLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQAT  SKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATKYSKHGE 322

[Close]

BLAST of Carg21390 vs. ExPASy Swiss-Prot
Match: Q9SGS2 (High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 4.3e-109
Identity = 205/319 (64.26%), Postives = 245/319 (76.80%), Query Frame = 0


Query: 16  KHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLS 135
           EKVV EKKWREVGG+F+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A   
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTRDSELAMVEYTPKTTSF----SPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVT 195
             +P+   E+A+VEYTP +  +     P++G +   ++        GTI+GKFDCGYLV 
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAI--------GTIEGKFDCGYLVK 204

Query: 196 VKLGSEVLRGVLYHPDQPVPSDLRPQS--TNAIIPY--TGGRQRHAGRRHRRRRRKADPN 255
           VKLGSE+L GVLYH  QP PS   P +   NA++PY  TG R+R  G+R RR RR+ DPN
Sbjct: 205 VKLGSEILNGVLYHSAQPGPSS-SPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPN 264

Query: 256 HPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKER 315
           +PKPNRSGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+ LS EERMVYQ+IGLKDKER
Sbjct: 265 YPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKER 324

Query: 316 YKRELKEYKEKMRQATADI 327
           Y+REL EY+E +R    D+
Sbjct: 325 YQRELNEYRETLRLRDGDM 332

[Close]

BLAST of Carg21390 vs. ExPASy Swiss-Prot
Match: Q9MAT6 (High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.7e-68
Identity = 141/319 (44.20%), Postives = 207/319 (64.89%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPI-----CAPQAPLSF- 142
           +W+EV   F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I      +P A   F 
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 -GSPTRDSELAMVEYTPKTTSFSPAE--GDNLSHSLLFFVGSITGTIDGKFDCGYLVTVK 202
            G+     EL  + +TP+    + AE  G +L+ S      ++ G IDGKF+ GYLVTV 
Sbjct: 143 QGAIRPSQELQALTFTPQ-PKINTAEFLGGSLAGS------NVVGVIDGKFESGYLVTVT 202

Query: 203 LGSEVLRGVLYH-PDQPVPSDLRPQSTNAIIPYT-----------GGRQRHAGRRHRRRR 262
           +GSE L+GVLY    Q   S   PQ ++ ++P T           GG  +   RR +   
Sbjct: 203 IGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEI 262

Query: 263 RKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIG 321
           ++ DP+HPKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WNKL+ +E+++YQ   
Sbjct: 263 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKA 322

[Close]

BLAST of Carg21390 vs. ExPASy Swiss-Prot
Match: Q9LTT3 (High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.9e-54
Identity = 126/298 (42.28%), Postives = 178/298 (59.73%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRD 142
           KW+EV G F F  T TSASFVLRK+YL  L+  E VY           + P+S    T +
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL---------EKPVSSLQSTDE 153

Query: 143 SELAMVEYTPKTTSFSPAEGDNLSHSLLFFVG-SITGTIDGKFDCGYLVTVKLGSEVLRG 202
           +  ++   +P     +P EG +        VG  + G IDGKFD GYLVT+KLGS+ L+G
Sbjct: 154 ALKSLANESP-----NPEEGIDEPQ-----VGYEVQGFIDGKFDSGYLVTMKLGSQELKG 213

Query: 203 VLYH-PDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKA--DPNHPKPNRSGYNF 262
           VLYH P  P  S    ++ +AI+       + + RRHR++ + A  D   PK +RSGYNF
Sbjct: 214 VLYHIPQTPSQSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRSGYNF 273

Query: 263 FFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYK 317
           FFAE++ +LK  Y  +ER  TK IG  W+ L+  E+ VYQ+ G+KD ERY+ E+ EYK
Sbjct: 274 FFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305

[Close]

BLAST of Carg21390 vs. ExPASy Swiss-Prot
Match: Q9LG02 (Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-43
Identity = 114/326 (34.97%), Postives = 168/326 (51.53%), Query Frame = 0


Query: 4   PARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLH 63
           PA   + + DV  H       + +++ +P +FW+ LR FH   + KF IP++GGK LDLH
Sbjct: 12  PANASALDNDVSSHMS---MLYQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLH 71

Query: 64  VLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGR 123
            L++EVT RGG EKV+ +++ +EV   F F  T T+++FVLRK YL +L+ +E +Y F  
Sbjct: 72  RLFNEVTSRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF-- 131

Query: 124 QGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGS-ITGTIDG 183
                  QAPLS       +   ++E          A  D  S  L    G+ ITG IDG
Sbjct: 132 -------QAPLSTFWEKEKALKLLIE--------KSANRDKDSQELK--PGTVITGIIDG 191

Query: 184 KFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRR 243
           KF+ GYL++ K+GSE L+G+LYH                I P T       G++  +  +
Sbjct: 192 KFESGYLISTKVGSEKLKGMLYH----------------ISPET-----KRGKKKAKSSQ 251

Query: 244 KADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGL 303
                 PK  R+GYNFF AE+  ++K+    ++    K  G  W  LS  +R VY     
Sbjct: 252 GDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSR 294

Query: 304 KDKERYKRELKEYKEKMRQATADIQA 329
           +D +RYK E+ +Y+  M    A+I A
Sbjct: 312 EDGKRYKMEILQYRSLMESRVAEIVA 294

[Close]

BLAST of Carg21390 vs. ExPASy Swiss-Prot
Match: Q68CP9 (AT-rich interactive domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ARID2 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-14
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 33  IVFWDTLRRFHFVMNTKF-MIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIF 92
           + F D LR+FH    + F  IP +GGKELDLH LY+ VT  GG  KV  + +W E+   F
Sbjct: 17  LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76

Query: 93  KFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAP 134
            F  + ++A+F L+++YL  L  YE+V+ FG       P  P
Sbjct: 77  NFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNP 118

[Close]

BLAST of Carg21390 vs. ExPASy TrEMBL
Match: A0A6J1FQ88 (high mobility group B protein 9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446267 PE=4 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 5.6e-184
Identity = 320/336 (95.24%), Postives = 321/336 (95.54%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRK DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKTDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 322

[Close]

BLAST of Carg21390 vs. ExPASy TrEMBL
Match: A0A6J1IY83 (high mobility group B protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481010 PE=4 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.3e-180
Identity = 316/336 (94.05%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNG VDKHYPPALA+HDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGGVDKHYPPALASHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE              +TGTI
Sbjct: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAE--------------VTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPS+LRPQSTNAIIPYTGGRQRHAGRRHRRR
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSNLRPQSTNAIIPYTGGRQRHAGRRHRRR 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI
Sbjct: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERYKRELKEYKEKMRQATADIQAT  SKHGE
Sbjct: 301 GLKDKERYKRELKEYKEKMRQATADIQATKYSKHGE 322

[Close]

BLAST of Carg21390 vs. ExPASy TrEMBL
Match: A0A6J1FKI9 (high mobility group B protein 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446267 PE=4 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 2.0e-178
Identity = 320/373 (85.79%), Postives = 321/373 (86.06%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL
Sbjct: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQ-------------------------------------APLSFGSPTRDS 180
           FGRQGPICAPQ                                     APLSFGSPTRDS
Sbjct: 121 FGRQGPICAPQGPFLFSPSIFPFLLYPLFSISDFAVNLSWVLSFSSSTAPLSFGSPTRDS 180

Query: 181 ELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVTVKLGSEVLRGVL 240
           ELAMVEYTPKTTSFSPAE              +TGTIDGKFDCGYLVTVKLGSEVLRGVL
Sbjct: 181 ELAMVEYTPKTTSFSPAE--------------VTGTIDGKFDCGYLVTVKLGSEVLRGVL 240

Query: 241 YHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKADPNHPKPNRSGYNFFFAEK 300
           YHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRK DPNHPKPNRSGYNFFFAEK
Sbjct: 241 YHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKTDPNHPKPNRSGYNFFFAEK 300

Query: 301 HYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQAT 337
           HYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQAT
Sbjct: 301 HYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQAT 359

[Close]

BLAST of Carg21390 vs. ExPASy TrEMBL
Match: A0A5A7VAK3 (High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003410 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.4e-165
Identity = 286/336 (85.12%), Postives = 300/336 (89.29%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MS PARTK+WNG +DKHYPP LATHDEVISDPIVFWDTLRRFHF+MNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG +FKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPIC PQAP SFGSPT ++ELA+VEYTPKTTSFSP                +TGTI
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGP-----------PSEVTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHP+QP PSDLRP STNAI+PYTGGR RH+GRRHRR 
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRS 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRK DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN LSPEERMVYQNI
Sbjct: 241 RRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERY+RELKEYKEKMR  T D+   N SKHG+
Sbjct: 301 GLKDKERYRRELKEYKEKMRMGT-DVDGANYSKHGD 324

[Close]

BLAST of Carg21390 vs. ExPASy TrEMBL
Match: E5GCD0 (High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.4e-165
Identity = 286/336 (85.12%), Postives = 300/336 (89.29%), Query Frame = 0


Query: 1   MSTPARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKEL 60
           MS PARTK+WNG +DKHYPP LATHDEVISDPIVFWDTLRRFHF+MNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG +FKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGSITGTI 180
           FGRQGPIC PQAP SFGSPT ++ELA+VEYTPKTTSFSP                +TGTI
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGP-----------PSEVTGTI 180

Query: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRR 240
           DGKFDCGYLVTVKLGSEVLRGVLYHP+QP PSDLRP STNAI+PYTGGR RH+GRRHRR 
Sbjct: 181 DGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRS 240

Query: 241 RRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNI 300
           RRK DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN LSPEERMVYQNI
Sbjct: 241 RRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNI 300

Query: 301 GLKDKERYKRELKEYKEKMRQATADIQATNCSKHGE 337
           GLKDKERY+RELKEYKEKMR  T D+   N SKHG+
Sbjct: 301 GLKDKERYRRELKEYKEKMRMGT-DVDGANYSKHGD 324

[Close]

BLAST of Carg21390 vs. TAIR 10
Match: AT1G76110.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 396.0 bits (1016), Expect = 3.1e-110
Identity = 205/319 (64.26%), Postives = 245/319 (76.80%), Query Frame = 0


Query: 16  KHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLS 135
           EKVV EKKWREVGG+F+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A   
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTRDSELAMVEYTPKTTSF----SPAEGDNLSHSLLFFVGSITGTIDGKFDCGYLVT 195
             +P+   E+A+VEYTP +  +     P++G +   ++        GTI+GKFDCGYLV 
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAI--------GTIEGKFDCGYLVK 204

Query: 196 VKLGSEVLRGVLYHPDQPVPSDLRPQS--TNAIIPY--TGGRQRHAGRRHRRRRRKADPN 255
           VKLGSE+L GVLYH  QP PS   P +   NA++PY  TG R+R  G+R RR RR+ DPN
Sbjct: 205 VKLGSEILNGVLYHSAQPGPSS-SPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPN 264

Query: 256 HPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKER 315
           +PKPNRSGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+ LS EERMVYQ+IGLKDKER
Sbjct: 265 YPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKER 324

Query: 316 YKRELKEYKEKMRQATADI 327
           Y+REL EY+E +R    D+
Sbjct: 325 YQRELNEYRETLRLRDGDM 332

[Close]

BLAST of Carg21390 vs. TAIR 10
Match: AT1G04880.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 261.2 bits (666), Expect = 1.2e-69
Identity = 141/319 (44.20%), Postives = 207/319 (64.89%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPI-----CAPQAPLSF- 142
           +W+EV   F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I      +P A   F 
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 -GSPTRDSELAMVEYTPKTTSFSPAE--GDNLSHSLLFFVGSITGTIDGKFDCGYLVTVK 202
            G+     EL  + +TP+    + AE  G +L+ S      ++ G IDGKF+ GYLVTV 
Sbjct: 143 QGAIRPSQELQALTFTPQ-PKINTAEFLGGSLAGS------NVVGVIDGKFESGYLVTVT 202

Query: 203 LGSEVLRGVLYH-PDQPVPSDLRPQSTNAIIPYT-----------GGRQRHAGRRHRRRR 262
           +GSE L+GVLY    Q   S   PQ ++ ++P T           GG  +   RR +   
Sbjct: 203 IGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEI 262

Query: 263 RKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIG 321
           ++ DP+HPKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WNKL+ +E+++YQ   
Sbjct: 263 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKA 322

[Close]

BLAST of Carg21390 vs. TAIR 10
Match: AT3G13350.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 212.2 bits (539), Expect = 6.3e-55
Identity = 126/298 (42.28%), Postives = 178/298 (59.73%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRD 142
           KW+EV G F F  T TSASFVLRK+YL  L+  E VY           + P+S    T +
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL---------EKPVSSLQSTDE 153

Query: 143 SELAMVEYTPKTTSFSPAEGDNLSHSLLFFVG-SITGTIDGKFDCGYLVTVKLGSEVLRG 202
           +  ++   +P     +P EG +        VG  + G IDGKFD GYLVT+KLGS+ L+G
Sbjct: 154 ALKSLANESP-----NPEEGIDEPQ-----VGYEVQGFIDGKFDSGYLVTMKLGSQELKG 213

Query: 203 VLYH-PDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKA--DPNHPKPNRSGYNF 262
           VLYH P  P  S    ++ +AI+       + + RRHR++ + A  D   PK +RSGYNF
Sbjct: 214 VLYHIPQTPSQSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRSGYNF 273

Query: 263 FFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYK 317
           FFAE++ +LK  Y  +ER  TK IG  W+ L+  E+ VYQ+ G+KD ERY+ E+ EYK
Sbjct: 274 FFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305

[Close]

BLAST of Carg21390 vs. TAIR 10
Match: AT1G55650.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-44
Identity = 114/326 (34.97%), Postives = 168/326 (51.53%), Query Frame = 0


Query: 4   PARTKSWNGDVDKHYPPALATHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLH 63
           PA   + + DV  H       + +++ +P +FW+ LR FH   + KF IP++GGK LDLH
Sbjct: 12  PANASALDNDVSSHMS---MLYQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLH 71

Query: 64  VLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGR 123
            L++EVT RGG EKV+ +++ +EV   F F  T T+++FVLRK YL +L+ +E +Y F  
Sbjct: 72  RLFNEVTSRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF-- 131

Query: 124 QGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEGDNLSHSLLFFVGS-ITGTIDG 183
                  QAPLS       +   ++E          A  D  S  L    G+ ITG IDG
Sbjct: 132 -------QAPLSTFWEKEKALKLLIE--------KSANRDKDSQELK--PGTVITGIIDG 191

Query: 184 KFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRRHRRRRR 243
           KF+ GYL++ K+GSE L+G+LYH                I P T       G++  +  +
Sbjct: 192 KFESGYLISTKVGSEKLKGMLYH----------------ISPET-----KRGKKKAKSSQ 251

Query: 244 KADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGL 303
                 PK  R+GYNFF AE+  ++K+    ++    K  G  W  LS  +R VY     
Sbjct: 252 GDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSR 294

Query: 304 KDKERYKRELKEYKEKMRQATADIQA 329
           +D +RYK E+ +Y+  M    A+I A
Sbjct: 312 EDGKRYKMEILQYRSLMESRVAEIVA 294

[Close]

BLAST of Carg21390 vs. TAIR 10
Match: AT3G28730.1 (high mobility group )

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-05
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 236 RHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWNKLSPEER 295
           + ++ ++K DPN PK   SG+ FF   +   +K  +P     E  K++G+ W ++S +++
Sbjct: 549 KRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDK 608

Query: 296 MVYQNIGLKDKERYKRELKEYK 317
             Y+     DK+RYK E+ +YK
Sbjct: 609 EPYEAKAQVDKQRYKDEISDYK 630

The following BLAST results are available for this feature:

BLAST of Carg21390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037933.1	1.7e-195	100.00	High mobility group B protein 9, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6608616.1	3.9e-184	95.54	High mobility group B protein 9, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940773.1	1.1e-183	95.24	high mobility group B protein 9-like isoform X2 [Cucurbita moschata]	[more]
XP_023525872.1	3.7e-182	94.64	high mobility group B protein 9-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022982046.1	2.6e-180	94.05	high mobility group B protein 9-like [Cucurbita maxima] >XP_022982047.1 high mob...	[more]

BLAST of Carg21390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGS2	4.3e-109	64.26	High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV...	[more]
Q9MAT6	1.7e-68	44.20	High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 ...	[more]
Q9LTT3	8.9e-54	42.28	High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 ...	[more]
Q9LG02	4.1e-43	34.97	Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMG...	[more]
Q68CP9	2.4e-14	41.18	AT-rich interactive domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ARID2...	[more]

BLAST of Carg21390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQ88	5.6e-184	95.24	high mobility group B protein 9-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IY83	1.3e-180	94.05	high mobility group B protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481010...	[more]
A0A6J1FKI9	2.0e-178	85.79	high mobility group B protein 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7VAK3	3.4e-165	85.12	High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
E5GCD0	3.4e-165	85.12	High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Carg21390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76110.1	3.1e-110	64.26	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT1G04880.1	1.2e-69	44.20	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT3G13350.1	6.3e-55	42.28	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT1G55650.1	2.9e-44	34.97	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT3G28730.1	2.7e-05	31.71	high mobility group	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 305..332
None	No IPR available	SMART	SM01014	ARID_2	coord: 26..116 e-value: 1.8E-28 score: 110.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..247
None	No IPR available	PANTHER	PTHR46691:SF1	HIGH MOBILITY GROUP B PROTEIN 9	coord: 13..328
None	No IPR available	PANTHER	PTHR46691	HIGH MOBILITY GROUP B PROTEIN 9	coord: 13..328
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 249..313 e-value: 2.21663E-19 score: 78.8237
None	No IPR available	CDD	cd16872	ARID_HMGB9-like	coord: 31..116 e-value: 4.9217E-46 score: 149.337
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 248..317 e-value: 6.4E-14 score: 62.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 249..316 e-value: 1.3E-11 score: 44.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 249..316 score: 14.571702
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 30..121 e-value: 8.9E-31 score: 118.2
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 35..116 e-value: 6.3E-18 score: 65.2
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 29..120 score: 24.535831
IPR036431	ARID DNA-binding domain superfamily	GENE3D	1.10.150.60		coord: 24..126 e-value: 9.1E-26 score: 91.8
IPR036431	ARID DNA-binding domain superfamily	SUPERFAMILY	46774	ARID-like	coord: 26..127
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 233..330 e-value: 1.6E-19 score: 72.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 246..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21390-RA	Carg21390-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding