Carg04319 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04319
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Epidermal patterning factor-like protein
Location	Carg_Chr01: 201064 .. 202462 (+)
RNA-Seq Expression	Carg04319
Synteny	Carg04319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCAGAGCCGCTGATGGGAAATCGCCAAGATTTGAATGGACAGTCGAGAAGAAGAAGAAGAAGAAGAAGAAGCGTGAAAGAAAATGCAGGTGGTAATGGAATAATCAACCACTCACATCTCGCAGATATCAATAAGAAATCCCTAGACGATATCGGACAGCAGCAGAGCTATCATCTCCAAAACGTACCATCTCTGCATTTGATGCTTAAACTACCTCCTCTGCATACCCATTTTCATCCTTTTTCTTTTGTACAATATCCTCTCATTTTCTCATTCATTTTTTAAATTTTACATCACTCAAATCCCAATTCTTCAATATTGGGTATGTCCACATAGAAACCACTAGTTACTGCCTGCCATGTGTTTGATTATTTGCTTATCTGAAAGTTTTGGCCTAATGCTTTCAACTCTCACATAATTCATAACACTTGTTCAAATACAACCAAATAAGCGATTAAACTTTCGTATGGGATGTTAATAATTGCTATCTTCATTCCTTAAGGGAAGAATGTAGTGATTTCCATCTTGATTATAACCCAAGTGGATGGCTGAGATTGAATTTGGAGCTGCATTCTTACTACTCTGTAAAAGATCGACCCCATTTGTAGTACCTTATTTAATTGATGCAATTTTTTTCCTTCTCCTCCATAAATAGCCCCTCTGTCAATGGATCTTCTCTTCTTTAAATAGGAATGAAACTGGCAGAGGTGAAATAATAAAGCCCCTGCAGTCAAGGTAGCTGGTGTTTTTATTGTTCTTCTTCTCCATATTTACATTGCTTCTGGTTTGGGGAAATGTGAACCTGCTTCATACCCTCAATTATCTGTCTGGGTTCTCAAGAAGACATGAAAGGAACGTATTATTGTTTTATGTTCATTCTGCATTTAGCTTGTTGGGTGTCTGCTAAAACCACCGCTCTTGCTCCAAATCATCCTCTCCTTCCTCATAAACAACAACGTCCGTTGCCAGCTCTTGTCTCGGCCTCTTCTAATTCAAAACAGGTCAACCTTCGATTTGATTATATGTCCGTGAAATAAGTTTAGATTTCTTATTATTAGTCCCGTGTTCGATTCACGGCTGGTGTCGATGTTGAACTCATTGTTCTGTGTGTTTTTGAAGGGTGTTGGAGGCGTAAATGAAGAAGAAATGTTGTATAGAGGGATGAGACGAATGGGTTCAGGGCGGCCGAGGTGTGAGCACAAATGCTATGGATGCAGTCCATGTGAAGCCATTGAAGTGCCTACCAACAACAACAACAACAAGAGGCGCACCCAGGTGGGGGTCCAATACACCAACTATGAGCCCGAGGGATGGAAATGCAAGTGTGGCCATTCCTTTTACACCCCTTGATTCTAACTTGCTTTTCAATTATTGCTTCTTCTTCTTCTTCTTCTTC

mRNA sequence

TTTGCAGAGCCGCTGATGGGAAATCGCCAAGATTTGAATGGACAGTCGAGAAGAAGAAGAAGAAGAAGAAGAAGCGTGAAAGAAAATGCAGGTGGTAATGGAATAATCAACCACTCACATCTCGCAGATATCAATAAGAAATCCCTAGACGATATCGGACAGCAGCAGAGCTATCATCTCCAAAACGTACCATCTCTGCATTTGATGCTTAAACTACCTCCTCTGCATACCCATTTTCATCCTTTTTCTTTTGTACAATATCCTCTCATTTTCTCATTCATTTTTTAAATTTTACATCACTCAAATCCCAATTCTTCAATATTGGGTATGTCCACATAGAAACCACTAGTTACTGCCTGCCATGTGTTTGATTATTTGCTTATCTGAAAGTTTTGGCCTAATGCTTTCAACTCTCACATAATTCATAACACTTGTTCAAATACAACCAAATAAGCGATTAAACTTTCGTATGGGATGTTAATAATTGCTATCTTCATTCCTTAAGGGAAGAATGTAGTGATTTCCATCTTGATTATAACCCAAGTGGATGGCTGAGATTGAATTTGGAGCTGCATTCTTACTACTCTGTAAAAGATCGACCCCATTTGTAGTACCTTATTTAATTGATGCAATTTTTTTCCTTCTCCTCCATAAATAGCCCCTCTGTCAATGGATCTTCTCTTCTTTAAATAGGAATGAAACTGGCAGAGGTGAAATAATAAAGCCCCTGCAGTCAAGGTAGCTGGTGTTTTTATTGTTCTTCTTCTCCATATTTACATTGCTTCTGGTTTGGGGAAATGTGAACCTGCTTCATACCCTCAATTATCTGTCTGGGTTCTCAAGAAGACATGAAAGGAACGTATTATTGTTTTATGTTCATTCTGCATTTAGCTTGTTGGGTGTCTGCTAAAACCACCGCTCTTGCTCCAAATCATCCTCTCCTTCCTCATAAACAACAACGTCCGTTGCCAGCTCTTGTCTCGGCCTCTTCTAATTCAAAACAGGGTGTTGGAGGCGTAAATGAAGAAGAAATGTTGTATAGAGGGATGAGACGAATGGGTTCAGGGCGGCCGAGGTGTGAGCACAAATGCTATGGATGCAGTCCATGTGAAGCCATTGAAGTGCCTACCAACAACAACAACAACAAGAGGCGCACCCAGGTGGGGGTCCAATACACCAACTATGAGCCCGAGGGATGGAAATGCAAGTGTGGCCATTCCTTTTACACCCCTTGATTCTAACTTGCTTTTCAATTATTGCTTCTTCTTCTTCTTCTTCTTC

Coding sequence (CDS)

ATGAAAGGAACGTATTATTGTTTTATGTTCATTCTGCATTTAGCTTGTTGGGTGTCTGCTAAAACCACCGCTCTTGCTCCAAATCATCCTCTCCTTCCTCATAAACAACAACGTCCGTTGCCAGCTCTTGTCTCGGCCTCTTCTAATTCAAAACAGGGTGTTGGAGGCGTAAATGAAGAAGAAATGTTGTATAGAGGGATGAGACGAATGGGTTCAGGGCGGCCGAGGTGTGAGCACAAATGCTATGGATGCAGTCCATGTGAAGCCATTGAAGTGCCTACCAACAACAACAACAACAAGAGGCGCACCCAGGTGGGGGTCCAATACACCAACTATGAGCCCGAGGGATGGAAATGCAAGTGTGGCCATTCCTTTTACACCCCTTGA

Protein sequence

MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCKCGHSFYTP

Homology

[Close]

BLAST of Carg04319 vs. NCBI nr
Match: KAG7036422.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 5.9e-72
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCK 120
           EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCK
Sbjct: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCK 120

Query: 121 CGHSFYTP 129
           CGHSFYTP
Sbjct: 121 CGHSFYTP 128

[Close]

BLAST of Carg04319 vs. NCBI nr
Match: XP_022997834.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 125/132 (94.70%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQR LPALVSASSNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRLLPALVSASSNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNN----NNNKRRTQVGVQYTNYEPEG 120
           EMLYRGMR MGSGRPRCEHKCYGCSPCEAIEVPTNN    NNNKRRT VGVQYTNYEPEG
Sbjct: 61  EMLYRGMRGMGSGRPRCEHKCYGCSPCEAIEVPTNNNNSKNNNKRRTHVGVQYTNYEPEG 120

Query: 121 WKCKCGHSFYTP 129
           WKCKCGHSFYTP
Sbjct: 121 WKCKCGHSFYTP 132

[Close]

BLAST of Carg04319 vs. NCBI nr
Match: XP_023523688.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 2.6e-67
Identity = 123/130 (94.62%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFMFILHLACWV AKTTA APNHPLLPHKQQR LPALVSA+SNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMFILHLACWVPAKTTAFAPNHPLLPHKQQRLLPALVSAASNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNN--KRRTQVGVQYTNYEPEGWK 120
           EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNN  KRRT VGVQYTNYEPEGWK
Sbjct: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNNKKRRTHVGVQYTNYEPEGWK 120

Query: 121 CKCGHSFYTP 129
           CKCGHSFYTP
Sbjct: 121 CKCGHSFYTP 130

[Close]

BLAST of Carg04319 vs. NCBI nr
Match: XP_022948940.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-65
Identity = 119/129 (92.25%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFM +LHLACWVSAKTTA APNHPLLPHKQQR LPAL SASSNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMLVLHLACWVSAKTTAFAPNHPLLPHKQQRLLPALASASSNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNN-NNKRRTQVGVQYTNYEPEGWKC 120
           EM+YRG RRMGSGRPRCEHKCYGCSPCEAIEVPTNNN   KRRTQVGVQYTNYEPEGWKC
Sbjct: 61  EMMYRGTRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNKKKKRRTQVGVQYTNYEPEGWKC 120

Query: 121 KCGHSFYTP 129
           KCGHSFYTP
Sbjct: 121 KCGHSFYTP 129

[Close]

BLAST of Carg04319 vs. NCBI nr
Match: KAG6606705.1 (EPIDERMAL PATTERNING FACTOR-like protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 5.3e-65
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 9   MFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEEEMLYRGMR 68
           MFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEEEMLYRGMR
Sbjct: 1   MFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEEEMLYRGMR 60

Query: 69  RMGSGRPRCEHKCYGCSPCEAIEVPT-NNNNNKRRTQVGVQYTNYEPEGWKCKCGHSFYT 128
           RMGSGRPRCEHKCYGCSPCEAIEVPT NNNNNKRRTQVGVQYTNYEPEGWKCKCGHSFYT
Sbjct: 61  RMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNNKRRTQVGVQYTNYEPEGWKCKCGHSFYT 120

[Close]

BLAST of Carg04319 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 45  SASSNSKQGVGGVNE-EEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRT 104
           +A  NS++ +   NE +E + +  RR+GS  P CE KCYGC PCEAI+ PT ++      
Sbjct: 31  AAEENSRRRILNPNENKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISS----IP 90

Query: 105 QVGVQYTNYEPEGWKCKC 122
            +   Y NY+PEGW+C C
Sbjct: 91  HLSPHYANYQPEGWRCHC 104

[Close]

BLAST of Carg04319 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 30/88 (34.09%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 57  VNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNK---------------- 116
           ++ +  L     R+GS  P C ++C  C PC AI+VPT    ++                
Sbjct: 35  ISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPS 94

Query: 117 RRTQVGVQYTNYEPEGWKCKCGHSFYTP 129
             T V  QY+NY+P GWKC C   FY P
Sbjct: 95  SLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg04319 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 54  VGGVNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYT-NY 113
           +G  ++E  L R +R +GS  PRC  KC  C+PC+ + VP            G   T  Y
Sbjct: 90  IGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVP---------VPPGTPVTAEY 149

Query: 114 EPEGWKCKCGHSFYTP 129
            PE W+CKCG+  Y P
Sbjct: 150 YPEAWRCKCGNKLYMP 156

[Close]

BLAST of Carg04319 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-05
Identity = 22/59 (37.29%), Postives = 28/59 (47.46%), Query Frame = 0


Query: 71  GSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQY-TNYEPEGWKCKCGHSFYTP 129
           GS  P C  KC  C PC+ + VP          Q G+     Y PE W+CKCG+  + P
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVP---------IQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg04319 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-05
Identity = 23/59 (38.98%), Postives = 29/59 (49.15%), Query Frame = 0


Query: 71  GSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVG-VQYTNYEPEGWKCKCGHSFYTP 129
           GS  P C  KC  C PC+A+ VP          Q G +    Y PE W+CKCG+  + P
Sbjct: 58  GSVPPMCRLKCGKCEPCKAVHVP---------IQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Carg04319 vs. ExPASy TrEMBL
Match: A0A6J1KCN6 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492675 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.6e-68
Identity = 125/132 (94.70%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQR LPALVSASSNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRLLPALVSASSNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNN----NNNKRRTQVGVQYTNYEPEG 120
           EMLYRGMR MGSGRPRCEHKCYGCSPCEAIEVPTNN    NNNKRRT VGVQYTNYEPEG
Sbjct: 61  EMLYRGMRGMGSGRPRCEHKCYGCSPCEAIEVPTNNNNSKNNNKRRTHVGVQYTNYEPEG 120

Query: 121 WKCKCGHSFYTP 129
           WKCKCGHSFYTP
Sbjct: 121 WKCKCGHSFYTP 132

[Close]

BLAST of Carg04319 vs. ExPASy TrEMBL
Match: A0A6J1GBB4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452440 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 119/129 (92.25%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTYYCFM +LHLACWVSAKTTA APNHPLLPHKQQR LPAL SASSNSKQGVGGVNEE
Sbjct: 1   MKGTYYCFMLVLHLACWVSAKTTAFAPNHPLLPHKQQRLLPALASASSNSKQGVGGVNEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNN-NNKRRTQVGVQYTNYEPEGWKC 120
           EM+YRG RRMGSGRPRCEHKCYGCSPCEAIEVPTNNN   KRRTQVGVQYTNYEPEGWKC
Sbjct: 61  EMMYRGTRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNKKKKRRTQVGVQYTNYEPEGWKC 120

Query: 121 KCGHSFYTP 129
           KCGHSFYTP
Sbjct: 121 KCGHSFYTP 129

[Close]

BLAST of Carg04319 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 81/128 (63.28%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTY+CF+FIL L CWVSA     APN  LLPHKQ             SKQ V G+ EE
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQ---------GLIESKQAVKGIKEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCK 120
           E  YRGMR++GS  P CEHKCYGC PCEAI+VPT  N   RR+ +GVQYTNYEPEGWKCK
Sbjct: 61  E-FYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTN---RRSHIGVQYTNYEPEGWKCK 115

Query: 121 CGHSFYTP 129
           CG SFY+P
Sbjct: 121 CGPSFYSP 115

[Close]

BLAST of Carg04319 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 81/128 (63.28%), Postives = 90/128 (70.31%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLACWVSAKTTALAPNHPLLPHKQQRPLPALVSASSNSKQGVGGVNEE 60
           MKGTY+CF+FIL L CWVSA     APN  LLPHKQ             SKQ V G+ EE
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQ---------GLIESKQAVKGIKEE 60

Query: 61  EMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEGWKCK 120
           E  YRGMR++GS  P CEHKCYGC PCEAI+VPT  N   RR+ +GVQYTNYEPEGWKCK
Sbjct: 61  E-FYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTN---RRSHIGVQYTNYEPEGWKCK 115

Query: 121 CGHSFYTP 129
           CG SFY+P
Sbjct: 121 CGPSFYSP 115

[Close]

BLAST of Carg04319 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.9e-34
Identity = 78/132 (59.09%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 1   MKGTYYCFMFILHLA--CWVSAKTTALAPNH--PLLPHKQQRPLPALVSASSNSKQGVGG 60
           MKGT+ CF+  L +A  CWVSA T   APNH  PLLPHKQ      L+S S +SK+G   
Sbjct: 1   MKGTFCCFILTLQIACSCWVSAATRPFAPNHALPLLPHKQ-----GLISGSFDSKEGFEA 60

Query: 61  VNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYTNYEPEG 120
           VN      RGMR +GS  P C+HKCYGCSPCEAI+VPT +    R + +GVQYTNYEPEG
Sbjct: 61  VN------RGMREIGSSPPSCQHKCYGCSPCEAIQVPTTS----RHSHLGVQYTNYEPEG 117

Query: 121 WKCKCGHSFYTP 129
           WKCKCG SFY+P
Sbjct: 121 WKCKCGPSFYSP 117

[Close]

BLAST of Carg04319 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 45  SASSNSKQGVGGVNE-EEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRT 104
           +A  NS++ +   NE +E + +  RR+GS  P CE KCYGC PCEAI+ PT ++      
Sbjct: 31  AAEENSRRRILNPNENKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISS----IP 90

Query: 105 QVGVQYTNYEPEGWKCKC 122
            +   Y NY+PEGW+C C
Sbjct: 91  HLSPHYANYQPEGWRCHC 104

[Close]

BLAST of Carg04319 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 30/88 (34.09%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 57  VNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNK---------------- 116
           ++ +  L     R+GS  P C ++C  C PC AI+VPT    ++                
Sbjct: 35  ISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPS 94

Query: 117 RRTQVGVQYTNYEPEGWKCKCGHSFYTP 129
             T V  QY+NY+P GWKC C   FY P
Sbjct: 95  SLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg04319 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 54  VGGVNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYT-NY 113
           +G  ++E  L R +R +GS  PRC  KC  C+PC+ + VP            G   T  Y
Sbjct: 164 IGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVP---------VPPGTPVTAEY 223

Query: 114 EPEGWKCKCGHSFYTP 129
            PE W+CKCG+  Y P
Sbjct: 224 YPEAWRCKCGNKLYMP 230

[Close]

BLAST of Carg04319 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 54  VGGVNEEEMLYRGMRRMGSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVGVQYT-NY 113
           +G  ++E  L R +R +GS  PRC  KC  C+PC+ + VP            G   T  Y
Sbjct: 90  IGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVP---------VPPGTPVTAEY 149

Query: 114 EPEGWKCKCGHSFYTP 129
            PE W+CKCG+  Y P
Sbjct: 150 YPEAWRCKCGNKLYMP 156

[Close]

BLAST of Carg04319 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 48.5 bits (114), Expect = 4.6e-06
Identity = 23/59 (38.98%), Postives = 29/59 (49.15%), Query Frame = 0


Query: 71  GSGRPRCEHKCYGCSPCEAIEVPTNNNNNKRRTQVG-VQYTNYEPEGWKCKCGHSFYTP 129
           GS  P C  KC  C PC+A+ VP          Q G +    Y PE W+CKCG+  + P
Sbjct: 58  GSVPPMCRLKCGKCEPCKAVHVP---------IQPGLIMPLEYYPEAWRCKCGNKLFMP 107

The following BLAST results are available for this feature:

BLAST of Carg04319 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036422.1	5.9e-72	100.00	EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022997834.1	1.2e-67	94.70	EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita maxima]	[more]
XP_023523688.1	2.6e-67	94.62	EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022948940.1	2.4e-65	92.25	EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita moschata]	[more]
KAG6606705.1	5.3e-65	99.17	EPIDERMAL PATTERNING FACTOR-like protein 3, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Carg04319 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C4B8C4	3.2e-12	43.59	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	2.1e-08	34.09	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	2.8e-08	38.16	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	6.5e-05	37.29	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	6.5e-05	38.98	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Carg04319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCN6	5.6e-68	94.70	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GBB4	1.2e-65	92.25	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BIS6	2.1e-38	63.28	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030...	[more]
A0A5D3BVF6	2.1e-38	63.28	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1DIF6	6.9e-34	59.09	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Carg04319 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13898.1	2.3e-13	43.59	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT5G10310.1	1.5e-09	34.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30370.1	2.0e-09	38.16	allergen-related	[more]
AT2G30370.2	2.0e-09	38.16	allergen-related	[more]
AT3G22820.1	4.6e-06	38.98	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 69..128 e-value: 4.3E-18 score: 65.0
None	No IPR available	PANTHER	PTHR33109:SF14	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 3	coord: 1..128
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04319-RA	Carg04319-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region