MELO3C030057.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030057.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr03: 21436367 .. 21436919 (+)
RNA-Seq ExpressionMELO3C030057.jh1
SyntenyMELO3C030057.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGACTTAAACGATGGACAAGAGTTGGATGAAACTTAGAAATAAGTCCTCCCTTAAGTATAGACAAGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTCACGTTGATGCCTACGAACGATTAAGGTGCCCATGCAAGAGATGTTTGAATTTAAGTTGGAGCTTATTAGAGGGTGTGGAACAACATCTACTGACTATTAGAATATCCTCCTCTTACACATAATAGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAATTTTGAGGAATGAACTAGTAGTAATCCTTTTGGTGAAGGAACTAGTAGTAGGCAATTTAATGAAGAAGATGAAATGTTTGGTATGCTAAATGATTTACAAGCCCCCGTTGAACATGAAGAGGAAATAGAGTTATGTCGTTTGGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAACAATATATATCAGGACTTATTGAATGAAGCACGTAATGAGTTATACCCCGGTTGTTCTGAATTTTCATCGTTGAATTTGTTGGTTAAGTTGA

mRNA sequence

GGGACTTAAACGATGGACAAGAGTTGGATGAAACTTAGAAATAAGTCCTCCCTTAAGTATAGACAAGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTCACGTTGATGCCTACGAACGATTAAGGTGCCCATGCAAGAGATGTTTGAATTTAAGTTGGAGCTTATTAGAGGGTGTGGAACAACATCTACTGACTATTAGAATATCCTCCTCTTACACATAATAGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAATTTTGAGGAATGAACTAGTAGTAATCCTTTTGGTGAAGGAACTAGTAGTAGGCAATTTAATGAAGAAGATGAAATGTTTGGTATGCTAAATGATTTACAAGCCCCCGTTGAACATGAAGAGGAAATAGAGTTATGTCGTTTGGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAACAATATATATCAGGACTTATTGAATGAAGCACGTAATGAGTTATACCCCGGTTGTTCTGAATTTTCATCGTTGAATTTGTTGGTTAAGTTGA

Coding sequence (CDS)

ATGTTTGGTATGCTAAATGATTTACAAGCCCCCGTTGAACATGAAGAGGAAATAGAGTTATGTCGTTTGGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAACAATATATATCAGGACTTATTGAATGAAGCACGTAATGAGTTATACCCCGGTTGTTCTGAATTTTCATCGTTGAATTTGTTGGTTAAGTTG

Protein sequence

MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCSEFSSLNLLVKL
Homology
[Close]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match: TYK11771.1 (uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 7.98e-38
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           MFGMLNDLQAPVEHEEEIELCRLEDEM MNVGVDIDEDRTNNIYQDLLNEARNELYPGCS
Sbjct: 273 MFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 332

Query: 61  EFSSLNLLVKL 71
           EFSSLNLLVKL
Sbjct: 333 EFSSLNLLVKL 343

[Close]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match: KAA0032327.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.65e-33
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1  MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
          MFGMLNDL AP+EHEEEIE  RLEDEMPMNVGV+ID DRTNNI+QDLLNEARNELYPGCS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 EFSSLNLLVKL 71
          EF SLN LVKL
Sbjct: 61 EFLSLNFLVKL 71

[Close]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match: KAA0064176.1 (CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transposable element [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (306), Expect = 2.71e-31
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 4  MLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCSEFS 63
          MLNDLQAP+EHEEE E  RLEDEMPMNVGVDIDEDRTNNI+ DLLNE RNELYPGCSEFS
Sbjct: 1  MLNDLQAPIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFS 60

Query: 64 SLNLLVKL 71
          SLN LVKL
Sbjct: 61 SLNFLVKL 68

[Close]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match: TYK18968.1 (uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 3.02e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           +FGMLNDLQAP+EHEEEIE  RLEDEM MNVGV+IDED TNNI+QDLLN+ARNELYPGCS
Sbjct: 184 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 243

Query: 61  EFSSLNLLVKL 71
           EFSSLN LVKL
Sbjct: 244 EFSSLNFLVKL 254

[Close]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match: KAA0056368.1 (uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 3.03e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           +FGMLNDLQAP+EHEEEIE  RLEDEM MNVGV+IDED TNNI+QDLLN+ARNELYPGCS
Sbjct: 110 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 169

Query: 61  EFSSLNLLVKL 71
           EFSSLN LVKL
Sbjct: 170 EFSSLNFLVKL 180

[Close]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CIW6 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00980 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 3.86e-38
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           MFGMLNDLQAPVEHEEEIELCRLEDEM MNVGVDIDEDRTNNIYQDLLNEARNELYPGCS
Sbjct: 273 MFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 332

Query: 61  EFSSLNLLVKL 71
           EFSSLNLLVKL
Sbjct: 333 EFSSLNLLVKL 343

[Close]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SSE5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001860 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.28e-33
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1  MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
          MFGMLNDL AP+EHEEEIE  RLEDEMPMNVGV+ID DRTNNI+QDLLNEARNELYPGCS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 EFSSLNLLVKL 71
          EF SLN LVKL
Sbjct: 61 EFLSLNFLVKL 71

[Close]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BT53 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00550 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 1.31e-31
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 4  MLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCSEFS 63
          MLNDLQAP+EHEEE E  RLEDEMPMNVGVDIDEDRTNNI+ DLLNE RNELYPGCSEFS
Sbjct: 1  MLNDLQAPIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFS 60

Query: 64 SLNLLVKL 71
          SLN LVKL
Sbjct: 61 SLNFLVKL 68

[Close]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D5X7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00580 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.46e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           +FGMLNDLQAP+EHEEEIE  RLEDEM MNVGV+IDED TNNI+QDLLN+ARNELYPGCS
Sbjct: 184 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 243

Query: 61  EFSSLNLLVKL 71
           EFSSLN LVKL
Sbjct: 244 EFSSLNFLVKL 254

[Close]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001050 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.47e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MFGMLNDLQAPVEHEEEIELCRLEDEMPMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 60
           +FGMLNDLQAP+EHEEEIE  RLEDEM MNVGV+IDED TNNI+QDLLN+ARNELYPGCS
Sbjct: 110 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 169

Query: 61  EFSSLNLLVKL 71
           EFSSLN LVKL
Sbjct: 170 EFSSLNFLVKL 180

The following BLAST results are available for this feature:
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11771.17.98e-3898.59uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa][more]
KAA0032327.12.65e-3387.32CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0064176.12.71e-3188.24CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transpos... [more]
TYK18968.13.02e-3185.92uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa][more]
KAA0056368.13.03e-3185.92uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa][more]
BLAST of MELO3C030057.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CIW63.86e-3898.59DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SSE51.28e-3387.32CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BT531.31e-3188.24CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3D5X71.46e-3185.92Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UMP41.47e-3185.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C030057.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030057.jh1.t1MELO3C030057.jh1.t1mRNA