MELO.jh033126.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033126.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRNA helicase
Locationchr02: 119039 .. 120287 (+)
RNA-Seq ExpressionMELO.jh033126.1
SyntenyMELO.jh033126.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGACGCAAAACCATATAGTCCATACGTTCTATCCTTATCGCTGGCTTTGCGATATTTGATAAACCCATCTTTTACTCTGCTCCAGTTCATACTTCATTGGGAGTTTGAGCGAGTGCAAGCTCGCAACTTACTTAGTAAGCCACTGAAGAGAAGCTGAAAACAAGAAATGGCTTCCTTCTTGGAGTTACTGCAATTCATCATGCACCAAATCTTGATTTGTACAGAAGGATGGGAACAACGGCGACGGCATCACCGACGCCTTCTCTTTCTTTTGTTGACAAGTCCCACTTAATTGCCCTCAAAGTTCAAACTTGTTTCAGTGGTAGTAGCCGTCGCAACTTGTCCGGATTCACCTCTTCTGCAATTGCGACTCCCAATTCCATACTCAGCGAAGAGGCTTTAGAAGTCTCGATGGCTTTCTAAAGACCCCTTGGATGATAATCTCATCGACCCTGAACCTAATTCATCTCTTGCATTTTCTGCTGACGATGACGAGCTCGCCATTTCCAAATTAAACTTGCCCCAGCGGCTGACGGATGCTCTTCAGAAGCGTGGGATTACCCACCTCTTCCCCATTCAAGTACTATCCCACTTTCTGACCTCGCTTTATGTCCCATTGCTCATTCCTGTCTCATTTTACAGTTAATGTTGTTAGAAGTTTTTTTTTTTTCCAATTACTTGCTAAATGCTACGGGAAAGGGGGACACAGTTTCTTTCTTTAACCAGACGCACTGCTTTACGTTTGTAGTTGTGATTTTCTCCGTTCTCTTTCAGTATTTTTGTTAGGTTTTTTGAGGCTATTACTTTTAATTCAGATATTATCTGTTGGCTTAAATTTAAAATTCAAAATGTTATAGATGTGGGAAATGCTAACATGCAAAATCCATAGTGCACAAATTTTGAGAATGATGCATACACCTGCTTGTTTAAAAACTTTCATTTAGGATATAGATTCATTTTATTCTTAAGTTAATCTTCCAGGTTATGTTAACCACACCAGAAGAAGTAATTTGTTTCGAAGCTTAATATTCGTTTCGTTACAAGATATTTGTTGTTGAATAATTTGATTACTCATGTGGTGTGATTTTATCTCTATTTTATTTATTTATTTATTTGTTCATTTGAAACATGCAGAGAGCTGTTCTTGTCCCTGCATTAGAAGGTCGAGACCTCATTGCCCGTGCAAAGACTGGTACTGGGAAGACATTGGCTTTTGGGATACCAATTCTTAAAAAACTCACTGAAGA

mRNA sequence

GCGGACGCAAAACCATATAGTCCATACGTTCTATCCTTATCGCTGGCTTTGCGATATTTGATAAACCCATCTTTTACTCTGCTCCAGTTCATACTTCATTGGGAGTTTGAGCGAGTGCAAGCTCGCAACTTACTTAGTAAGCCACTGAAGAGAAGCTGAAAACAAGAAATGGCTTCCTTCTTGGAGTTACTGCAATTCATCATGCACCAAATCTTGATTTGTACAGAAGGATGGGAACAACGGCGACGGCATCACCGACGCCTTCTCTTTCTTTTGTTGACAAGTCCCACTTAATTGCCCTCAAAGTTCAAACTTGTTTCAGTGGTAGTAGCCGTCGCAACTTGTCCGGATTCACCTCTTCTGCAATTGCGACTCCCAATTCCATACTCAGCGAAGAGGCTTTAGAAGTCTCGATGGCTTTCTAAAGACCCCTTGGATGATAATCTCATCGACCCTGAACCTAATTCATCTCTTGCATTTTCTGCTGACGATGACGAGCTCGCCATTTCCAAATTAAACTTGCCCCAGCGGCTGACGGATGCTCTTCAGAAGCGTGGGATTACCCACCTCTTCCCCATTCAAAGAGCTGTTCTTGTCCCTGCATTAGAAGGTCGAGACCTCATTGCCCGTGCAAAGACTGGTACTGGGAAGACATTGGCTTTTGGGATACCAATTCTTAAAAAACTCACTGAAGA

Coding sequence (CDS)

ATGGGAACAACGGCGACGGCATCACCGACGCCTTCTCTTTCTTTTGTTGACAAGTCCCACTTAATTGCCCTCAAAGTTCAAACTTGTTTCAGTGGTAGTAGCCGTCGCAACTTGTCCGGATTCACCTCTTCTGCAATTGCGACTCCCAATTCCATACTCAGCGAAGAGGCTTTAGAAGTCTCGATGGCTTTCTAA

Protein sequence

MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEALEVSMAF
Homology
[Close]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match: XP_008450498.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 106 bits (265), Expect = 6.79e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 22 MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match: KAA0050973.1 (DEAD-box ATP-dependent RNA helicase 3 [Cucumis melo var. makuwa] >TYK10319.1 DEAD-box ATP-dependent RNA helicase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 6.80e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 22 MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match: XP_004135577.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis sativus] >KGN66001.1 hypothetical protein Csa_007094 [Cucumis sativus])

HSP 1 Score: 104 bits (260), Expect = 3.22e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 2  GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 23 GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match: XP_038879136.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.20e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSS-AIATPNSILSEEA 57
          MGTTATASPTPSLSF +KSHLIALK QTCFSGSSRRNLSGFTSS AIATPNSILSEEA
Sbjct: 22 MGTTATASPTPSLSFAEKSHLIALKAQTCFSGSSRRNLSGFTSSSAIATPNSILSEEA 79

[Close]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match: XP_022157919.1 (DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 3.32e-14
Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNL------------SGFTSSAIAT 59
          MGT AT SPTPSLSF DKSH+ A K QT FS  SRRNL            SGF+SSAIAT
Sbjct: 22 MGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLAFSDGSSAGTFKSGFSSSAIAT 81

[Close]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match: A0A1S3BQ06 (RNA helicase OS=Cucumis melo OX=3656 GN=LOC103492086 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.29e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 22 MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match: A0A5D3CJA2 (RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004730 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.29e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 22 MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match: A0A0A0M1E9 (RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_1G560830 PE=3 SV=1)

HSP 1 Score: 104 bits (260), Expect = 1.56e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 2  GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 57
          GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA
Sbjct: 23 GTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNLSGFTSSAIATPNSILSEEA 78

[Close]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match: A0A6J1DXX8 (RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.61e-14
Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNL------------SGFTSSAIAT 59
          MGT AT SPTPSLSF DKSH+ A K QT FS  SRRNL            SGF+SSAIAT
Sbjct: 22 MGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLAFSDGSSAGTFKSGFSSSAIAT 81

[Close]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match: A0A6J1DUC8 (RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.61e-14
Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1  MGTTATASPTPSLSFVDKSHLIALKVQTCFSGSSRRNL------------SGFTSSAIAT 59
          MGT AT SPTPSLSF DKSH+ A K QT FS  SRRNL            SGF+SSAIAT
Sbjct: 22 MGTAATPSPTPSLSFADKSHINASKAQTSFSSGSRRNLAFSDGSSAGTFKSGFSSSAIAT 81

The following BLAST results are available for this feature:
BLAST of MELO.jh033126.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450498.16.79e-25100.00PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis melo][more]
KAA0050973.16.80e-25100.00DEAD-box ATP-dependent RNA helicase 3 [Cucumis melo var. makuwa] >TYK10319.1 DEA... [more]
XP_004135577.13.22e-24100.00DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Cucumis sativus] >KGN66001... [more]
XP_038879136.11.20e-2193.10DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Benincasa hispida][more]
XP_022157919.13.32e-1464.79DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X2 [Momordica chara... [more]
BLAST of MELO.jh033126.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BQ063.29e-25100.00RNA helicase OS=Cucumis melo OX=3656 GN=LOC103492086 PE=3 SV=1[more]
A0A5D3CJA23.29e-25100.00RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004730 P... [more]
A0A0A0M1E91.56e-24100.00RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_1G560830 PE=3 SV=1[more]
A0A6J1DXX81.61e-1464.79RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1[more]
A0A6J1DUC81.61e-1464.79RNA helicase OS=Momordica charantia OX=3673 GN=LOC111024523 PE=3 SV=1[more]
BLAST of MELO.jh033126.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033126.1.t1MELO.jh033126.1.t1mRNA