Cp4.1LG19g03940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g03940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger protein 593
Location	Cp4.1LG19: 3857483 .. 3859306 (+)
RNA-Seq Expression	Cp4.1LG19g03940
Synteny	Cp4.1LG19g03940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCGTAGACGCCATTTCTTTATTACTCCATCCTCCTCTGAACAATCTCTCTTTCTCTCTCGCTAGGGTTCTCTGGCGGAAGAACCGCCGAATAAAACCCTAAATCTTACTCAGATTCTTCCGTAGTTAGGCTCTCCGGACTCCAATCCAAGAAGATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGACCGCTAGGCGTACGAAATTTCTCATCAATGATATCCTTTTACTCTCTAGTTTAATGGGATTTCCTCTTTCAATTCTTCTTATGTTTCCTGTATTATTTACGTTTTTTTTTTTGGGTGTTTTACTTAACTCGATGAGTTGGTGAATCACGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGAGTATGTTCTTTCCTCCGTTAATGTTTTTTTTATTACTTGACATGAAATTCATGTAGAAAATTGTTTCTCATGCTAGTTGAATCAGCCGAATTTAATATCAAGGAATAAATTCCATTTAATTCCATTCTGACTTTAAATGAATCATTAGTGTTCATGATTAGGTTTAGATGGAGCTGGAGGGCTGAAATATTTAGTGAAGTATTGTTAGCTTCTTCTTGAATGAAATTCAGAAGTAAATGTTGAGGTTTACTACTTATAAGGGATTAGTGGAATGGGAAAAACAGTGTAGTGGGTTGGGGCTTACGTATTTTGATTTAATTACTGATGGCGGTTGGAGTGCTATAATATTTGTATTCATGATTGATTTGTATTCATGATTGATGATTTCAGCCGATACTTTGCGAATGTATCTGTGAGGGATGAGCATTTCAAAACCAAGCGTCACAGGAAGCGGTAAGCTAAGCCAATTTTCACTTGCTCTTGCTTCTTTTTGTTACGTTTTTAATTCGCTTTTAGTTTTGCTTTGTGAATCTGTAGACAATTTCACGTAATGAATTGTTCTCTCTCCATTGGTGTATAGGTAAAATTATAACTTAATTTTAAATAATGGAATGAACTACCTTAAGCCGTGCTTGATAACCATTTGGATTTTGGTTTTTGAAAACTATGGTTGTTTTCAAAATTTGACTTGGATTTGGAAAATATATGTGAAAAGTAGATAACGAAACAAAGATACCCATCAATAGAAGTAGCGTTTACAAATTCAATTTTCGAAAACAAAAAAGTGATAAACGGGGGCCTTAATTTCTTAAGTTTCCTCTCTCGATCCTTTCTTAATATGTTATAGATATGGCACATGTGTTTGTGACTCTGATTACATTCATTTGATTGTAAGATATGAAGTTGGTATGATTGTATTAGAGAAGAGCATTTGATTTGCAATTGTTAACAATGTTACTATCCACAACGACAATGGTGCAGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGAGCTTATCACACAACTGAAATCATTTTTGGTGTTGTAGAGAGCTTAGAATGAGGTTTGTTTCTTGTTTAACCAAAAGGATCAATTTTATCATACATTTTATGCCCATGTATTGTATTTTCCGAGTTCGTTTTATGAATCAATTTTAGCTTCGTATTTCACACCAGCTTCCTAGTTTCGTGTTATGTTACATTCTTACCTAATGTAACCCCATGGCTCTTCTTAGTGATCATGGAGAGCCGTGTTAATAATAAAAGGTTTATAGTGAATGACT

mRNA sequence

TACAGCGTAGACGCCATTTCTTTATTACTCCATCCTCCTCTGAACAATCTCTCTTTCTCTCTCGCTAGGGTTCTCTGGCGGAAGAACCGCCGAATAAAACCCTAAATCTTACTCAGATTCTTCCGTAGTTAGGCTCTCCGGACTCCAATCCAAGAAGATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGACCGCTAGGCGTACGAAATTTCTCATCAATGGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTTTGCGAATGTATCTGTGAGGGATGAGCATTTCAAAACCAAGCGTCACAGGAAGCGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGAGCTTATCACACAACTGAAATCATTTTTGGTGTTGTAGAGAGCTTAGAATGAGGTTTGTTTCTTGTTTAACCAAAAGGATCAATTTTATCATACATTTTATGCCCATGTATTGTATTTTCCGAGTTCGTTTTATGAATCAATTTTAGCTTCGTATTTCACACCAGCTTCCTAGTTTCGTGTTATGTTACATTCTTACCTAATGTAACCCCATGGCTCTTCTTAGTGATCATGGAGAGCCGTGTTAATAATAAAAGGTTTATAGTGAATGACT

Coding sequence (CDS)

ATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGACCGCTAGGCGTACGAAATTTCTCATCAATGGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTTTGCGAATGTATCTGTGAGGGATGAGCATTTCAAAACCAAGCGTCACAGGAAGCGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA

Protein sequence

MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM

Homology

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot
Match: B0BLT0 (Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 7   HRSVKKRRYSH--KTARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCL 66
           H+S KK+  S   KT RR K L   D + +D   KPE  +  L   +D  LPG  Q+YCL
Sbjct: 10  HKSDKKKNISKLWKTKRRVKDL---DQIHHD--MKPENAKLLLNQEIDYQLPGNAQHYCL 69

Query: 67  HCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMG 109
           HC RYF ++    EHFKTK H++R+K  +   P+TQ +A+ AAGMG
Sbjct: 70  HCSRYFVDLKTLKEHFKTKVHKRRLK-QLREEPYTQEEAERAAGMG 109

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot
Match: Q08004 (Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BUD20 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-11
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 14  RYS---HKTARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCLHCDRYF 73
           RYS   +KT RRT+ L    D++Y+ L   E  +  L  P+DE  PG+GQ+YC+HC +Y 
Sbjct: 3   RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 62

Query: 74  ANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGM 110
                   H K K H++RVK + G  P+TQ  +D AAG  +
Sbjct: 63  ETAIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot
Match: Q9U239 (Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 6   PHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCLH 65
           P    +K   S+KT +R        D +++ L KPE     L   +D DLPG GQ+YC+ 
Sbjct: 2   PSGGQRKHTISNKTRKRPG---KDLDQIHEDL-KPEKAAKLLQQEIDYDLPGNGQFYCIE 61

Query: 66  CDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMG 109
           C+R+F +   R  H KTK H+ RVK +    P+TQ +A+ A G G
Sbjct: 62  CERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot
Match: Q553S1 (Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275351 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-10
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPS-LPVDEDLPGMGQY 60
           MG    H     ++  +K AR TK      D ++D ++   +++ S   VD DLPGMGQ 
Sbjct: 1   MGRYSGHGGTHTKKKQYKRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQN 60

Query: 61  YCLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKL 117
           YC+HC ++F        H K K H+ RVK  +   P++  ++ +       DNG KL
Sbjct: 61  YCIHCSKHFVTNEDLQSHIKGKPHKIRVK-ELKTKPYSLAESQIPV-----DNGVKL 111

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot
Match: Q9P370 (Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bud20 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 36/105 (34.29%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 10  VKKRRYSHKTAR----RTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCLHCD 69
           V ++R  H        RT+      D +++ L + E +   LP+D DLPG+GQ+YC+ C 
Sbjct: 4   VARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESE-KFDKLPIDPDLPGLGQHYCIECA 63

Query: 70  RYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMP 111
           RYF +      H K K H++R+K  +   P+TQ +A+ A  +G P
Sbjct: 64  RYFDSSQALLVHKKGKVHKRRLK-NLREEPYTQEEAEAAVNIGQP 106

[Close]

BLAST of Cp4.1LG19g03940 vs. NCBI nr
Match: XP_022962632.1 (zinc finger protein 593 [Cucurbita moschata] >XP_023517301.1 zinc finger protein 593 [Cucurbita pepo subsp. pepo] >KAG7027247.1 Zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252 bits (643), Expect = 1.47e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. NCBI nr
Match: XP_022972762.1 (zinc finger protein 593 [Cucurbita maxima])

HSP 1 Score: 250 bits (639), Expect = 6.01e-84
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHK+ARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. NCBI nr
Match: KAG6595226.1 (Zinc finger protein 593, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (639), Expect = 7.59e-84
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMA+
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAI 119

[Close]

BLAST of Cp4.1LG19g03940 vs. NCBI nr
Match: XP_022143723.1 (zinc finger protein 593 [Momordica charantia])

HSP 1 Score: 240 bits (612), Expect = 7.92e-80
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD LKKP+VERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELKKPDVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHTQLDA+LAAGMGMPDNGPKLM+M
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMGMPDNGPKLMSM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. NCBI nr
Match: XP_008462489.1 (PREDICTED: zinc finger protein 593 [Cucumis melo])

HSP 1 Score: 239 bits (610), Expect = 1.60e-79
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVY+ L KPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMSGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL
Match: A0A6J1HD68 (zinc finger protein 593 OS=Cucurbita moschata OX=3662 GN=LOC111463050 PE=4 SV=1)

HSP 1 Score: 252 bits (643), Expect = 7.14e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL
Match: A0A6J1I5Q7 (zinc finger protein 593 OS=Cucurbita maxima OX=3661 GN=LOC111471272 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 2.91e-84
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHK+ARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL
Match: A0A6J1CRE9 (zinc finger protein 593 OS=Momordica charantia OX=3673 GN=LOC111013565 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 3.83e-80
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD LKKP+VERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELKKPDVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHTQLDA+LAAGMGMPDNGPKLM+M
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMGMPDNGPKLMSM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL
Match: A0A1S3CH13 (zinc finger protein 593 OS=Cucumis melo OX=3656 GN=LOC103500829 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 7.74e-80
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVY+ L KPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMSGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL
Match: A0A0A0KHA1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446540 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 2.22e-79
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVY+ L KPEVERPSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
           CLHCDRYFANVSVRDEHFKTKRHRKRVK M+GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of Cp4.1LG19g03940 vs. TAIR 10
Match: AT2G36930.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 193.7 bits (491), Expect = 8.2e-50
Identity = 87/116 (75.00%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 3   GKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCL 62
           G+CP R VKKRR SHKTARR KF + GDD+VY  L+KPE E   L +DEDLPGMGQ+YCL
Sbjct: 2   GRCPTRKVKKRRLSHKTARRDKFEVKGDDLVYTELRKPETEIKPLQLDEDLPGMGQFYCL 61

Query: 63  HCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMA 119
           HCDRYF+NVSVRD+HFKTK+H+KRV +MMG APH+QLDADLA GMGMPDNGPKLM+
Sbjct: 62  HCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLMS 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g03940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0BLT0	1.2e-13	45.28	Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1	[more]
Q08004	2.5e-11	40.59	Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
Q9U239	2.1e-10	38.10	Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 P...	[more]
Q553S1	4.7e-10	32.48	Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G027...	[more]
Q9P370	1.8e-09	34.29	Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]

BLAST of Cp4.1LG19g03940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962632.1	1.47e-84	100.00	zinc finger protein 593 [Cucurbita moschata] >XP_023517301.1 zinc finger protein...	[more]
XP_022972762.1	6.01e-84	99.16	zinc finger protein 593 [Cucurbita maxima]	[more]
KAG6595226.1	7.59e-84	99.16	Zinc finger protein 593, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022143723.1	7.92e-80	93.28	zinc finger protein 593 [Momordica charantia]	[more]
XP_008462489.1	1.60e-79	94.12	PREDICTED: zinc finger protein 593 [Cucumis melo]	[more]

BLAST of Cp4.1LG19g03940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HD68	7.14e-85	100.00	zinc finger protein 593 OS=Cucurbita moschata OX=3662 GN=LOC111463050 PE=4 SV=1	[more]
A0A6J1I5Q7	2.91e-84	99.16	zinc finger protein 593 OS=Cucurbita maxima OX=3661 GN=LOC111471272 PE=4 SV=1	[more]
A0A6J1CRE9	3.83e-80	93.28	zinc finger protein 593 OS=Momordica charantia OX=3673 GN=LOC111013565 PE=4 SV=1	[more]
A0A1S3CH13	7.74e-80	94.12	zinc finger protein 593 OS=Cucumis melo OX=3656 GN=LOC103500829 PE=4 SV=1	[more]
A0A0A0KHA1	2.22e-79	93.28	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446540 P...	[more]

BLAST of Cp4.1LG19g03940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36930.1	8.2e-50	75.00	zinc finger (C2H2 type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 56..90 e-value: 5.4E-10 score: 49.2
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 58..84 e-value: 2.7E-9 score: 37.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 45..109 e-value: 9.6E-23 score: 82.0
None	No IPR available	PANTHER	PTHR47444	EXPRESSED PROTEIN	coord: 1..119
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 61..83
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 47..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g03940.1	Cp4.1LG19g03940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding