Cp4.1LG19g02990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g02990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Tubulin beta chain
Location	Cp4.1LG19: 2628553 .. 2628807 (+)
RNA-Seq Expression	Cp4.1LG19g02990
Synteny	Cp4.1LG19g02990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGACTTTCATCGGAAATTCCACATCGATTCAGGAAATGTTCCGACGTGTGAGCGAACAGTTCACTGCCATGTTTAGGAGGAAAGCTTTCTTGCATTGGTACACCGGTGAAGGTATGGACGAGATGGAGTTCACCGAGGCCGAAAGTAACATGAACGATCTGGTTTCGGAATACCAGCAGTACCAAGATGCCACAGCTGATGAGGAATATTACGAGGAAGAAGAAGAAGAGGAACCTGAAGATGTGTAA

mRNA sequence

ATGGCTTCGACTTTCATCGGAAATTCCACATCGATTCAGGAAATGTTCCGACGTGTGAGCGAACAGTTCACTGCCATGTTTAGGAGGAAAGCTTTCTTGCATTGGTACACCGGTGAAGGTATGGACGAGATGGAGTTCACCGAGGCCGAAAGTAACATGAACGATCTGGTTTCGGAATACCAGCAGTACCAAGATGCCACAGCTGATGAGGAATATTACGAGGAAGAAGAAGAAGAGGAACCTGAAGATGTGTAA

Coding sequence (CDS)

ATGGCTTCGACTTTCATCGGAAATTCCACATCGATTCAGGAAATGTTCCGACGTGTGAGCGAACAGTTCACTGCCATGTTTAGGAGGAAAGCTTTCTTGCATTGGTACACCGGTGAAGGTATGGACGAGATGGAGTTCACCGAGGCCGAAAGTAACATGAACGATCTGGTTTCGGAATACCAGCAGTACCAAGATGCCACAGCTGATGAGGAATATTACGAGGAAGAAGAAGAAGAGGAACCTGAAGATGTGTAA

Protein sequence

MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEYYEEEEEEEPEDV

Homology

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot
Match: P12460 (Tubulin beta-2 chain OS=Glycine max OX=3847 GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-35
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEEYYEEEEEEE 81
           QQYQDATADE+ YEEEEEEE
Sbjct: 423 QQYQDATADEDEYEEEEEEE 442

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot
Match: P29502 (Tubulin beta-3 chain (Fragment) OS=Pisum sativum OX=3888 GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-34
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 354 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 413

Query: 61  QQYQDATADEE-YYEEEEEEEPE 83
           QQYQDATADEE  YE+EEEEEPE
Sbjct: 414 QQYQDATADEEGEYEDEEEEEPE 436

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot
Match: P20364 (Tubulin beta-1 chain (Fragment) OS=Daucus carota OX=4039 GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-34
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 231 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 290

Query: 61  QQYQDATAD-EEYYEEEEEEEPE 83
           QQYQDATAD EEYYE+EEEEE +
Sbjct: 291 QQYQDATADEEEYYEDEEEEEAQ 313

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot
Match: Q41783 (Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-34
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEEYYEEEEEEEPEDV 85
           QQYQDATADEE YE+EEE + +D+
Sbjct: 423 QQYQDATADEEEYEDEEEVQADDM 446

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot
Match: Q40665 (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-34
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422

Query: 61  QQYQDATADEEYYEEEEEEE 81
           QQYQDATA+EE YEEEEE+E
Sbjct: 423 QQYQDATAEEEDYEEEEEDE 442

[Close]

BLAST of Cp4.1LG19g02990 vs. NCBI nr
Match: XP_022931923.1 (tubulin beta-1 chain [Cucurbita moschata] >XP_023518313.1 tubulin beta-1 chain [Cucurbita pepo subsp. pepo] >KAG6595372.1 Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 3.59e-45
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEEYYEEEEEEEPEDV 84
           QQYQDATADEEYYEEEEEEEPEDV
Sbjct: 423 QQYQDATADEEYYEEEEEEEPEDV 446

[Close]

BLAST of Cp4.1LG19g02990 vs. NCBI nr
Match: TKY72401.1 (Tubulin beta-4 chain [Spatholobus suberectus])

HSP 1 Score: 149 bits (375), Expect = 8.90e-45
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 60

Query: 61 QQYQDATADEEYYEEEEEEE 80
          QQYQDATADEE YEEEEEEE
Sbjct: 61 QQYQDATADEEEYEEEEEEE 80

[Close]

BLAST of Cp4.1LG19g02990 vs. NCBI nr
Match: AFK39312.1 (unknown [Medicago truncatula])

HSP 1 Score: 148 bits (374), Expect = 1.23e-44
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 60

Query: 61 QQYQDATADEEYYEEEEEEE 80
          QQYQDATADEE YEEEEEEE
Sbjct: 61 QQYQDATADEEDYEEEEEEE 80

[Close]

BLAST of Cp4.1LG19g02990 vs. NCBI nr
Match: AFK38702.1 (unknown [Lotus japonicus])

HSP 1 Score: 149 bits (376), Expect = 1.71e-44
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           M+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 34  MSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 93

Query: 61  QQYQDATADEEYYEEEEEEEP 81
           QQYQDATADE+ YEEEEEEEP
Sbjct: 94  QQYQDATADEDEYEEEEEEEP 114

[Close]

BLAST of Cp4.1LG19g02990 vs. NCBI nr
Match: PON37100.1 (beta-tubulin [Parasponia andersonii] >PON90166.1 beta-tubulin [Trema orientale])

HSP 1 Score: 148 bits (373), Expect = 1.80e-44
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60

Query: 61 QQYQDATADEEYYEEEEEEEPEDV 84
          QQYQDATA+EE Y +EEEEEP+++
Sbjct: 61 QQYQDATAEEEDYYDEEEEEPQEI 84

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL
Match: A0A6J1F050 (Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111438199 PE=3 SV=1)

HSP 1 Score: 160 bits (405), Expect = 1.74e-45
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEEYYEEEEEEEPEDV 84
           QQYQDATADEEYYEEEEEEEPEDV
Sbjct: 423 QQYQDATADEEYYEEEEEEEPEDV 446

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL
Match: I3SGC0 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 148 bits (374), Expect = 5.94e-45
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 60

Query: 61 QQYQDATADEEYYEEEEEEE 80
          QQYQDATADEE YEEEEEEE
Sbjct: 61 QQYQDATADEEDYEEEEEEE 80

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL
Match: I3SEL0 (Tubulin_C domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 149 bits (376), Expect = 8.28e-45
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           M+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 34  MSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 93

Query: 61  QQYQDATADEEYYEEEEEEEP 81
           QQYQDATADE+ YEEEEEEEP
Sbjct: 94  QQYQDATADEDEYEEEEEEEP 114

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL
Match: A0A2P5AKM7 (Beta-tubulin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322960 PE=3 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.70e-45
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60

Query: 61 QQYQDATADEEYYEEEEEEEPEDV 84
          QQYQDATA+EE Y +EEEEEP+++
Sbjct: 61 QQYQDATAEEEDYYDEEEEEPQEI 84

[Close]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL
Match: A0A2P5EXA8 (Beta-tubulin OS=Trema orientale OX=63057 GN=TorRG33x02_140160 PE=3 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.70e-45
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
          MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 1  MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60

Query: 61 QQYQDATADEEYYEEEEEEEPEDV 84
          QQYQDATA+EE Y +EEEEEP+++
Sbjct: 61 QQYQDATAEEEDYYDEEEEEPQEI 84

[Close]

BLAST of Cp4.1LG19g02990 vs. TAIR 10
Match: AT5G44340.1 (tubulin beta chain 4 )

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-35
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422

Query: 61  QQYQDATADEEYYEEEEEE 80
           QQYQDATA EE YEEEEEE
Sbjct: 423 QQYQDATAGEEEYEEEEEE 441

[Close]

BLAST of Cp4.1LG19g02990 vs. TAIR 10
Match: AT4G20890.1 (tubulin beta-9 chain )

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-34
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 422

Query: 61  QQYQDATADEEYYEEEEEEE 81
           QQYQDAT  EE YEE+EEEE
Sbjct: 423 QQYQDATVGEEEYEEDEEEE 442

[Close]

BLAST of Cp4.1LG19g02990 vs. TAIR 10
Match: AT5G12250.1 (beta-6 tubulin )

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-34
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEE-YYEEEEEEE 81
           QQYQDATAD+E  YEE+E+EE
Sbjct: 423 QQYQDATADDEGEYEEDEDEE 443

[Close]

BLAST of Cp4.1LG19g02990 vs. TAIR 10
Match: AT1G75780.1 (tubulin beta-1 chain )

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-34
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 364 MASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423

Query: 61  QQYQDATADEE-YYEEEEEE 80
           QQYQDATADEE  Y+EEEE+
Sbjct: 424 QQYQDATADEEDEYDEEEEQ 443

[Close]

BLAST of Cp4.1LG19g02990 vs. TAIR 10
Match: AT5G62690.1 (tubulin beta chain 2 )

HSP 1 Score: 140.2 bits (352), Expect = 7.6e-34
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1   MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 60
           MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422

Query: 61  QQYQDATADEE-YYEEEEEEE 81
           QQYQDATADEE  YE+EEE E
Sbjct: 423 QQYQDATADEEGDYEDEEEGE 443

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12460	5.1e-35	97.50	Tubulin beta-2 chain OS=Glycine max OX=3847 GN=TUBB2 PE=3 SV=1	[more]
P29502	1.1e-34	96.39	Tubulin beta-3 chain (Fragment) OS=Pisum sativum OX=3888 GN=TUBB3 PE=2 SV=1	[more]
P20364	2.0e-34	95.18	Tubulin beta-1 chain (Fragment) OS=Daucus carota OX=4039 GN=TUBB1 PE=1 SV=2	[more]
Q41783	2.5e-34	91.67	Tubulin beta-6 chain OS=Zea mays OX=4577 GN=TUBB6 PE=2 SV=1	[more]
Q40665	4.3e-34	95.00	Tubulin beta-3 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB3 PE=2 SV=2	[more]

BLAST of Cp4.1LG19g02990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931923.1	3.59e-45	100.00	tubulin beta-1 chain [Cucurbita moschata] >XP_023518313.1 tubulin beta-1 chain [...	[more]
TKY72401.1	8.90e-45	97.50	Tubulin beta-4 chain [Spatholobus suberectus]	[more]
AFK39312.1	1.23e-44	97.50	unknown [Medicago truncatula]	[more]
AFK38702.1	1.71e-44	95.06	unknown [Lotus japonicus]	[more]
PON37100.1	1.80e-44	91.67	beta-tubulin [Parasponia andersonii] >PON90166.1 beta-tubulin [Trema orientale]	[more]

BLAST of Cp4.1LG19g02990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F050	1.74e-45	100.00	Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111438199 PE=3 SV=1	[more]
I3SGC0	5.94e-45	97.50	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
I3SEL0	8.28e-45	95.06	Tubulin_C domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
A0A2P5AKM7	8.70e-45	91.67	Beta-tubulin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322960 PE=3 SV=1	[more]
A0A2P5EXA8	8.70e-45	91.67	Beta-tubulin OS=Trema orientale OX=63057 GN=TorRG33x02_140160 PE=3 SV=1	[more]

BLAST of Cp4.1LG19g02990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44340.1	5.3e-35	96.20	tubulin beta chain 4	[more]
AT4G20890.1	1.5e-34	93.75	tubulin beta-9 chain	[more]
AT5G12250.1	4.5e-34	93.83	beta-6 tubulin	[more]
AT1G75780.1	5.8e-34	93.75	tubulin beta-1 chain	[more]
AT5G62690.1	7.6e-34	95.06	tubulin beta chain 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	PANTHER	PTHR11588:SF389	TUBULIN BETA-8 CHAIN	coord: 1..81
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 15..26 score: 79.05 coord: 50..68 score: 93.14
IPR023123	Tubulin, C-terminal	GENE3D	1.10.287.600	Helix hairpin bin	coord: 12..68 e-value: 7.4E-37 score: 126.9
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..81
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02990.1	Cp4.1LG19g02990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton