Cp4.1LG17g01830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g01830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG17: 1190452 .. 1190790 (-)
RNA-Seq ExpressionCp4.1LG17g01830
SyntenyCp4.1LG17g01830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATCGCAGAGACGACCCTCCGCCACCGCCTCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATTAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCGCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGAGCGATTTCTTCTTCTCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

mRNA sequence

ATGGCCGAATCGCAGAGACGACCCTCCGCCACCGCCTCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATTAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCGCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGAGCGATTTCTTCTTCTCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCGAATCGCAGAGACGACCCTCCGCCACCGCCTCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATTAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCGCTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGAGCGATTTCTTCTTCTCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCTTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Protein sequence

MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Homology
BLAST of Cp4.1LG17g01830 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 0

Query: 5   QRRPSATASRKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S+ AS ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS           +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSL----------T 83

Query: 65  GAISSSH----HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 112
            +   SH     +      E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  SSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

BLAST of Cp4.1LG17g01830 vs. NCBI nr
Match: XP_023515028.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219 bits (559), Expect = 5.74e-72
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112

BLAST of Cp4.1LG17g01830 vs. NCBI nr
Match: KAG6593848.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026180.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210 bits (534), Expect = 4.26e-68
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSS----HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSG+ISSS    HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 116

BLAST of Cp4.1LG17g01830 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 207 bits (528), Expect = 3.18e-67
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSSH-HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSG+ISSS  HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of Cp4.1LG17g01830 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 205 bits (522), Expect = 2.79e-66
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR S  A+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSS---HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSG+ISSS   HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of Cp4.1LG17g01830 vs. NCBI nr
Match: XP_038875425.1 (uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 162 bits (409), Expect = 4.16e-49
Identity = 91/113 (80.53%), Postives = 95/113 (84.07%), Query Frame = 0

Query: 1   MAESQRRPSATASRK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S  + R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSGASGRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
            DS   SSS   HHHH KESEPEKPPVFKKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  PDSREASSSSSQHHHH-KESEPEKPPVFKKWQHPAAPFHYDSGPRAPR-FVPV 111

BLAST of Cp4.1LG17g01830 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 1.54e-67
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSSH-HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSG+ISSS  HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of Cp4.1LG17g01830 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.35e-66
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR S  A+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGAISSS---HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           DSG+ISSS   HHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSISSSSSHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of Cp4.1LG17g01830 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 3.87e-48
Identity = 93/128 (72.66%), Postives = 98/128 (76.56%), Query Frame = 0

Query: 1   MAESQRRPSATASRK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S T +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADS--------GAISSSHHHHHHH-------HKESEPEKPPVFKKWQHPAAPFHYDSGSR 112
            DS         + SSSHHHHHHH       HKE E EK PVFKKWQHPAAPFHYDSG R
Sbjct: 61  PDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPR 120

BLAST of Cp4.1LG17g01830 vs. ExPASy TrEMBL
Match: A0A0A0LLJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.54e-42
Identity = 80/106 (75.47%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 18  PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSS-PTEIQNWTA------DSGAISSSHH 77
           PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSS P +I +W+        S   SSSHH
Sbjct: 14  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHH 73

Query: 78  HH----HHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 112
           HH    HHHHKES+PEK PVFKKWQHPAAPFHYDSG+RAPR FVPV
Sbjct: 74  HHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPR-FVPV 118

BLAST of Cp4.1LG17g01830 vs. ExPASy TrEMBL
Match: A0A6J1CA35 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009774 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 8.46e-38
Identity = 81/115 (70.43%), Postives = 86/115 (74.78%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQ-PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA++QRR S   SR+QQ PSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60

Query: 61  ADSGAISSSHHHHHHHHKESEPEKPPV--FKKWQHPAAPFHYDSGSRAPRAFVPV 112
             S +              S+PEKPPV   KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  EPSTSSQG-----------SDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 103

BLAST of Cp4.1LG17g01830 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-11
Identity = 47/112 (41.96%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPLVS-PSSPTEIQN 60
           M+ + R  S + +RK   SRLQRRAP  L+I+   ++WKVAIPLLSP  S P  P  +  
Sbjct: 1   MSSTARNISGSGNRKS--SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMK 60

Query: 61  WTADSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAF 110
                                 E EKPPVFKKWQHPAAPF+Y     + + F
Sbjct: 61  --------------REEQRWGKEAEKPPVFKKWQHPAAPFYYQPAPSSNQPF 96

BLAST of Cp4.1LG17g01830 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 9   SATASRKQQPSRLQRRAPASLQI----SRSDWKVAIPLLSPL-VSPSS------PTEIQN 68
           S +   ++QPSRL +R PA   +    + ++W  AIPLLSPL +SP S      P E   
Sbjct: 12  SDSGDLRRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPPVEKNQ 71

Query: 69  WTADSGAISSSHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV 113
            TA +                   EK PVFKKWQHPAAPF+Y+S +  P  FVPV
Sbjct: 72  STAVA------------------VEKTPVFKKWQHPAAPFYYESSTFVP-PFVPV 107

BLAST of Cp4.1LG17g01830 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 0

Query: 5   QRRPSATASRKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S+ AS ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS           +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSL----------T 83

Query: 65  GAISSSH----HHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVP 112
            +   SH     +      E E +K PVFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  SSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NN021.6e-0743.36Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
XP_023515028.15.74e-72100.00uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
KAG6593848.14.26e-6893.97putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]... [more]
XP_022930471.13.18e-6795.58uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata][more]
XP_023000559.12.79e-6693.04uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima][more]
XP_038875425.14.16e-4980.53uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1ER111.54e-6795.58uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KKB81.35e-6693.04uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A1S3CDB13.87e-4872.66uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN... [more]
A0A0A0LLJ82.54e-4275.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1[more]
A0A6J1CA358.46e-3870.43uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=... [more]
Match NameE-valueIdentityDescription
AT1G04330.17.1e-1141.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G23170.11.0e-0940.87unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G14450.11.1e-0843.36unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR33912:SF2PUTATIVE-RELATEDcoord: 1..110
IPR040381Uncharacterized protein At4g14450-likePANTHERPTHR33912OS01G0939400 PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01830.1Cp4.1LG17g01830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus