CSPI07G08740 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G08740
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7: 6579989 .. 6580243 (-)
RNA-Seq ExpressionCSPI07G08740
SyntenyCSPI07G08740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTATTTGCAGAATATGAAAACTAACGCGAACAACCTTGGTCAAGCCGGTAGCCTAGTACCTCATCATGCCCTTGTTTCACAGGTATTATTGGGATTAGATGAAGCGTATAACTTGGTCATTGTTCTTATCCAAGGAAAGTTGGAGACATCTTGGCACGACATGCAATCTGAGCTTCTAATATTGAAAAACTGTTGGATCACCAAAACACTCACAATATTACTGGTTATTAATTCCAAACGCTACTGT

mRNA sequence

ATGGAAGATTATTTGCAGAATATGAAAACTAACGCGAACAACCTTGGTCAAGCCGGTAGCCTAGTACCTCATCATGCCCTTGTTTCACAGGTATTATTGGGATTAGATGAAGCGTATAACTTGGTCATTGTTCTTATCCAAGGAAAGTTGGAGACATCTTGGCACGACATGCAATCTGAGCTTCTAATATTGAAAAACTGTTGGATCACCAAAACACTCACAATATTACTGGTTATTAATTCCAAACGCTACTGT

Coding sequence (CDS)

ATGGAAGATTATTTGCAGAATATGAAAACTAACGCGAACAACCTTGGTCAAGCCGGTAGCCTAGTACCTCATCATGCCCTTGTTTCACAGGTATTATTGGGATTAGATGAAGCGTATAACTTGGTCATTGTTCTTATCCAAGGAAAGTTGGAGACATCTTGGCACGACATGCAATCTGAGCTTCTAATATTGAAAAACTGTTGGATCACCAAAACACTCACAATATTACTGGTTATTAATTCCAAACGCTACTGT

Protein sequence

MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSELLILKNCWITKTLTILLVINSKRYC
Homology
BLAST of CSPI07G08740 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.6e-16
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL+ MK NA+NLGQAGS VPH  L+SQVLLGLDE YN V  +IQGK + SW DMQSE
Sbjct: 137 MEDYLRIMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSE 196

Query: 61  LLILKN 67
           LLI +N
Sbjct: 197 LLIFEN 202

BLAST of CSPI07G08740 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL+ MKTNA+NLGQA S +P  AL+SQVLLGLDE YN VIV+IQGK E SW DMQS+
Sbjct: 76  MEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSK 135

Query: 61  LLILK 66
           LLI +
Sbjct: 136 LLIFE 140

BLAST of CSPI07G08740 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           ME+YL  MKTN +NLGQ GS VP  AL+SQVLLGLDE YNLVIV+IQGK + SW DMQS+
Sbjct: 173 MEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSK 232

Query: 61  LLILK 66
           LLI +
Sbjct: 233 LLIFE 237

BLAST of CSPI07G08740 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 2   EDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSEL 61
           EDYL+ MKTN++ LGQAGS VP  A +SQ LLGLDE YN VI +IQGK E SW DMQSEL
Sbjct: 92  EDYLRIMKTNSDKLGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSEL 151

Query: 62  L 63
           L
Sbjct: 152 L 152

BLAST of CSPI07G08740 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           M D+L+ MK++A+NLGQAGS VP  +L+SQVLLGLDE YN V+  IQGK   SW +MQ+E
Sbjct: 103 MTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

BLAST of CSPI07G08740 vs. NCBI nr
Match: XP_031739915.1 (uncharacterized protein LOC116403326 isoform X2 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL  MKTN +NL QAGSLVP  AL+SQVLLGLDE YNLVIV+IQGKL  SW DMQSE
Sbjct: 50  MEDYLCVMKTNVDNLSQAGSLVPPCALISQVLLGLDEVYNLVIVVIQGKLNISWLDMQSE 109

Query: 61  LLILK 66
           LLI +
Sbjct: 110 LLIFE 114

BLAST of CSPI07G08740 vs. NCBI nr
Match: XP_031739914.1 (uncharacterized protein LOC116403326 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-16
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL  MKTN +NL QAGSLVP  AL+SQVLLGLDE YNLVIV+IQGKL  SW DMQSE
Sbjct: 50  MEDYLCVMKTNVDNLSQAGSLVPPCALISQVLLGLDEVYNLVIVVIQGKLNISWLDMQSE 109

Query: 61  LLILK 66
           LLI +
Sbjct: 110 LLIFE 114

BLAST of CSPI07G08740 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL+ MK NA+NLGQAGS VPH  L+SQVLLGLDE YN V  +IQGK + SW DMQSE
Sbjct: 137 MEDYLRIMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSE 196

Query: 61  LLILKN 67
           LLI +N
Sbjct: 197 LLIFEN 202

BLAST of CSPI07G08740 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-15
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           MEDYL+ MKTNA+NLGQA S +P  AL+SQVLLGLDE YN VIV+IQGK E SW DMQS+
Sbjct: 76  MEDYLRIMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSK 135

Query: 61  LLILK 66
           LLI +
Sbjct: 136 LLIFE 140

BLAST of CSPI07G08740 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-15
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1   MEDYLQNMKTNANNLGQAGSLVPHHALVSQVLLGLDEAYNLVIVLIQGKLETSWHDMQSE 60
           ME+YL  MKTN +NLGQ GS VP  AL+SQVLLGLDE YNLVIV+IQGK + SW DMQS+
Sbjct: 173 MEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSK 232

Query: 61  LLILK 66
           LLI +
Sbjct: 233 LLIFE 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3L79.6e-1671.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXB72.1e-1572.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
A0A5A7SIT73.6e-1570.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C3732.6e-1370.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A6J1D5J01.2e-1061.67uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
XP_031739915.13.0e-1676.92uncharacterized protein LOC116403326 isoform X2 [Cucumis sativus][more]
XP_031739914.13.0e-1676.92uncharacterized protein LOC116403326 isoform X1 [Cucumis sativus][more]
KAA0057475.12.0e-1571.21uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
KGN65684.14.4e-1572.31hypothetical protein Csa_019689 [Cucumis sativus][more]
KAA0026100.17.5e-1570.77uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G08740.1CSPI07G08740.1mRNA