CSPI06G06670 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G06670
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	trigger factor-like isoform X3
Location	Chr6: 5754773 .. 5757613 (-)
RNA-Seq Expression	CSPI06G06670
Synteny	CSPI06G06670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGTAATCCATCCCTTCTCTCCGCCTCAATTTGTGTTTCTCTACTTTCAGTGAATCATAAATCCATGGAATTTTCCAGTATGTTATTGCTTTATATTGAATGAGCAGTGAAGAACAGAGGTAACAAGCAATAACACTGAATATTGTGTATTGGGTCAGAACTATTTGTGCTAAAATAGCTGTTGGTTTTCTGGGGGAAAAATCCCACATGGGGAAGGTTGTGTAAAGTGCCAAAGTAGCTTAGTATTTTGGTGTCTCTGTTTATATTCATCTGAAGTTTATTCATTCTTATTCAACCTTCTTTCTTAATTGTATGTAGGCTATATATCATAAGCAGACAACGGATTACCTTACTCCAAACCTCACTTGCATAAGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGGTAATTTCATATCAATTTGACCATGTTTCTAATGATAACCCAAACTATGAATGATGGTGCCCCGAATTAGAAAGACTTTAGAAGATAATTGACTTACTTTGGACTTTTCTTTCATATGATGGAGCTGATTGGTTAACCATCGAAGTTTACCAAACGTATAAACTCATAAGAGACTAGCTTTACTAGCAAATTTTGTGCATGCAAGTCTAAATGCTCATGATCTGCTCCATTTTCTGAATTAGATGCTTCGCATCCTGTCCTGTTATTTAGTCACTCAAAACAGGAAGTTAACATGGAGTATCATCTGAAATCACCAATTCATCATCAGGGCGGCCAATACATTTTTGGATAAAATTTTATGTAGCCATAATCATTTGTATGGTTTTGAAAGACAAGTAGTTGTGTATGTTCCTAATTATAAAAGTTATATGTTCACTCTGCAGTACAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGGTTACAATACACTTCCTTCTGTTCCTAGAGAAATTTCAACATTATCCATTTGTATAAGGACTATGTTGGATAAAACTTCTAATTTCATTCTGAGCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGGTATGAAACATGGTGAGTTTATTCTCAGAATCCTTGTGTCTGTCACCCTCACATTTTTATTCTTCATTTAAGTCCTATTTAGAATTTAGAATTTTCAGTTATTTTGTTTTTGACCCTAAACTTTCAAATATAAGTTTTAGTTACTTCACTCTAACGCATTCTATTTAATCCCTAAGAACTATTCTAGTCCTTGCCATTAATAATTCATCAGTCATTTAAACAAAAAAAACTACTTCACTTTGAAATCCAAAATTGAACCTACTAGTGACCAATGTACCTATCCACCACAGAAATCAGTCATCTTGTAAATAATTAAGACGAAGAGATATACCTATTTGGGTTTCTGTTAAAATTTTATAAAAAAATAACGTTCACACCTGAAATGATTTTTGAGGCAAAAATTTAGGGATTGAAATAGAATATTTGAATCTCTGGGGACCAAAATAAAACGAGCATGAAAATACAGGTTTTGAAGTTGGATTTAAACCCTTGTTGTATGCACAACAATGTAATGCAAATTTAGGAACTCTTATTATTACCATAACGTTTCATTTTTTGGAGTTTGCAACCAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCAGAGGCATGTTTCTTATTTTTGAAGTGCTCGTTGTCTTCATTTTCACGTTCTCAAAATCATCATAACATTGTTCTGGCTCCATTAATTTTCTGGCGAGCACTTGTAAACAATCTTGTTTAAGGTTATGGGTGATTGAGATATCTTCATCTTAGAGAGATGAAATTGTTACTAAACGATCTCTCTAAACAATCAGAGAACCAATTTGCTTAATTTTCTTTTTTCTTTTCCTCAATTCATTTCATTGGACTTGAAACATGCTGCTCTTCATTGGATGTCAGGAAAGACGCCAAATGTAAGTTTTCTTTACTCTCAATCTGTTGGTTTTCAGGAAGTAACTACTGACAATCTTAATTGGGAAGACATGAGAAGTTACTGATAAGTTCATCATTTGTTCTCAACAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGGTAAAGATATAATTTGCATTTTCATGTTCTGATTTTGAAAGCATGACGCGCTGAAAGAGCTATGTTGGTTCAAATAGACTGAAAATAACATTATTTCAGCATGTTAGCGCATTCCATATTTTAGTGTTCTCTAATTTCCTTTGCTTTCCTGGAAATTTTTACCATTGTAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTGAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATGCAATTTTGCTAGGAATCTCCAAATCATCAGTTCAACTAAAATGATAGCATGTTGGAG

mRNA sequence

ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACGGATTACCTTACTCCAAACCTCACTTGCATAAGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTACAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTGAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATGCAATTTTGCTAGGAATCTCCAAATCATCAGTTCAACTAAAATGATAGCATGTTGGAG

Coding sequence (CDS)

ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACGGATTACCTTACTCCAAACCTCACTTGCATAAGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTACAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTGAGCTTAAGGAATCAAACTGA

Protein sequence

MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN*

Homology

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BLAST of CSPI06G06670 vs. ExPASy Swiss-Prot
Match: Q7NDP0 (Trigger factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=tig PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-05
Identity = 29/115 (25.22%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 91  ELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVY 150
           ++ + VEV G K++  +  +    +  A+ IPGFR  K       PR ++L+  G  ++ 
Sbjct: 12  QMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFRPGKA------PRQLVLQFYGKERLR 71

Query: 151 KQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELK 206
            Q ++ +I+S++   +E+E++    +L++  S+E+L  +++P E   F A ++++
Sbjct: 72  AQALENLIDSSLKEAIEQESIASLGNLQLRDSFEELLGRYQPGEPLSFKAAVDVQ 119

[Close]

BLAST of CSPI06G06670 vs. ExPASy Swiss-Prot
Match: B2IT89 (Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=tig PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-05
Identity = 30/115 (26.09%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 91  ELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVY 150
           ++ + +E++   T+  +  V   + + A  IPGFRR K      +PR ILL+ LG +++ 
Sbjct: 12  QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRRGK------VPRPILLQRLGTTRIK 71

Query: 151 KQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELK 206
              ++E+I   +   V++EA+      ++  S+EDL + +EP +     A ++++
Sbjct: 72  AAALEELIQDGIEQAVKQEAIPAIGQPQLRSSFEDLINNYEPGKPLTILAAVDVE 119

[Close]

BLAST of CSPI06G06670 vs. ExPASy Swiss-Prot
Match: B1XL18 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=tig PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-05
Identity = 27/114 (23.68%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 91  ELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVY 150
           ++ + +EV    T+  ++    R +A    +PGFR+ K      +P+ IL++ LGP+++ 
Sbjct: 12  QVGLEIEVPADVTQKAYDDTV-RKLARTVNLPGFRKGK------VPKQILIQRLGPNRIK 71

Query: 151 KQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIEL 205
             V++++I+ ++ A + +E ++   + ++  S++DL   ++P E   F A +++
Sbjct: 72  ASVLEDLIDDSLKAAIAQENIEALGNFQLKSSFDDLISAYKPGEASSFKAAVDV 118

[Close]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL
Match: A0A0A0KBW0 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.9e-107
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180

Query: 181 QSYEDLEDQFEPDENFFFDAIIELKESN 209
           QSYEDLEDQFEPDENFFFDAII+LKESN
Sbjct: 181 QSYEDLEDQFEPDENFFFDAIIQLKESN 208

[Close]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL
Match: A0A1S3CB34 (trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 196/208 (94.23%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180

Query: 181 QSYEDLEDQFEPDENFFFDAIIELKESN 209
           QSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 QSYEDLEDQFEPDEKFFFDAIIQLKESN 208

[Close]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL
Match: A0A5D3DLR6 (Trigger factor-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001220 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 196/209 (93.78%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIELKESN 209
           DQSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 209

[Close]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL
Match: A0A1S3CCS7 (trigger factor-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 196/209 (93.78%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIELKESN 209
           DQSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 209

[Close]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL
Match: A0A1S3CC05 (trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.2e-101
Identity = 196/212 (92.45%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD 180
           IPGFRRVKGG    KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD
Sbjct: 121 IPGFRRVKGGNIQRKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD 180

Query: 181 LRIDQSYEDLEDQFEPDENFFFDAIIELKESN 209
           LRIDQSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 LRIDQSYEDLEDQFEPDEKFFFDAIIQLKESN 212

[Close]

BLAST of CSPI06G06670 vs. NCBI nr
Match: XP_004140596.1 (uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus] >KGN46334.1 hypothetical protein Csa_005501 [Cucumis sativus])

HSP 1 Score: 396.0 bits (1016), Expect = 2.1e-106
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180

Query: 181 QSYEDLEDQFEPDENFFFDAIIELKESN 209
           QSYEDLEDQFEPDENFFFDAII+LKESN
Sbjct: 181 QSYEDLEDQFEPDENFFFDAIIQLKESN 208

[Close]

BLAST of CSPI06G06670 vs. NCBI nr
Match: XP_011656735.1 (uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 5.1e-105
Identity = 204/209 (97.61%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIELKESN 209
           DQSYEDLEDQFEPDENFFFDAII+LKESN
Sbjct: 181 DQSYEDLEDQFEPDENFFFDAIIQLKESN 209

[Close]

BLAST of CSPI06G06670 vs. NCBI nr
Match: XP_008460019.1 (PREDICTED: trigger factor-like isoform X4 [Cucumis melo])

HSP 1 Score: 382.5 bits (981), Expect = 2.4e-102
Identity = 196/208 (94.23%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRID 180

Query: 181 QSYEDLEDQFEPDENFFFDAIIELKESN 209
           QSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 QSYEDLEDQFEPDEKFFFDAIIQLKESN 208

[Close]

BLAST of CSPI06G06670 vs. NCBI nr
Match: XP_008460018.1 (PREDICTED: trigger factor-like isoform X3 [Cucumis melo] >TYK24577.1 trigger factor-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 196/209 (93.78%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRI 180
           IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI
Sbjct: 121 IPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRI 180

Query: 181 DQSYEDLEDQFEPDENFFFDAIIELKESN 209
           DQSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 209

[Close]

BLAST of CSPI06G06670 vs. NCBI nr
Match: XP_008460017.1 (PREDICTED: trigger factor-like isoform X2 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 196/212 (92.45%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 1   MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAA 60
           MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120
           CAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG KTRAIFNVVFDRMVAEAQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD 180
           IPGFRRVKGG    KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD
Sbjct: 121 IPGFRRVKGGNIQRKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKD 180

Query: 181 LRIDQSYEDLEDQFEPDENFFFDAIIELKESN 209
           LRIDQSYEDLEDQFEPDE FFFDAII+LKESN
Sbjct: 181 LRIDQSYEDLEDQFEPDEKFFFDAIIQLKESN 212

[Close]

BLAST of CSPI06G06670 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 93/163 (57.06%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 46  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRA 105
           +K+     NR   A CA  S+    +SS+ E   +T V  T+ + E+K+ V+VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPSD--VETSSKDESVLITKV-ETETSNEVKVHVQVSGEKTQT 99

Query: 106 IFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAY 165
           +FN VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG SKVYKQVIK++INS +  Y
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDY 159

Query: 166 VEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN 209
           V++E LKVGK+L + QSYEDLE+ FEP E+F FDA I+L+E++
Sbjct: 160 VKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

[Close]

BLAST of CSPI06G06670 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 93/163 (57.06%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 46  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRA 105
           +K+     NR   A CA  S+    +SS+ E   +T V  T+ + E+K+ V+VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPSD--VETSSKDESVLITKV-ETETSNEVKVHVQVSGEKTQT 99

Query: 106 IFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAY 165
           +FN VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG SKVYKQVIK++INS +  Y
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDY 159

Query: 166 VEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN 209
           V++E LKVGK+L + QSYEDLE+ FEP E+F FDA I+L+E++
Sbjct: 160 VKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

The following BLAST results are available for this feature:

BLAST of CSPI06G06670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7NDP0	2.8e-05	25.22	Trigger factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221...	[more]
B2IT89	6.2e-05	26.09	Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN...	[more]
B1XL18	6.2e-05	23.68	Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=320...	[more]

BLAST of CSPI06G06670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW0	9.9e-107	98.08	Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 P...	[more]
A0A1S3CB34	1.1e-102	94.23	trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]
A0A5D3DLR6	2.8e-101	93.78	Trigger factor-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCS7	2.8e-101	93.78	trigger factor-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]
A0A1S3CC05	6.2e-101	92.45	trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]

BLAST of CSPI06G06670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140596.1	2.1e-106	98.08	uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus] >KGN46334.1 hy...	[more]
XP_011656735.1	5.1e-105	97.61	uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus]	[more]
XP_008460019.1	2.4e-102	94.23	PREDICTED: trigger factor-like isoform X4 [Cucumis melo]	[more]
XP_008460018.1	5.8e-101	93.78	PREDICTED: trigger factor-like isoform X3 [Cucumis melo] >TYK24577.1 trigger fac...	[more]
XP_008460017.1	1.3e-100	92.45	PREDICTED: trigger factor-like isoform X2 [Cucumis melo]	[more]

BLAST of CSPI06G06670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30695.1	1.5e-43	57.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]
AT2G30695.2	1.5e-43	57.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 82..205 e-value: 2.6E-9 score: 37.5
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 82..206 e-value: 6.1E-16 score: 60.6
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 86..205
IPR005215	Trigger factor	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 1..208
None	No IPR available	PANTHER	PTHR30560:SF5	OS09G0515400 PROTEIN	coord: 1..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06670.2	CSPI06G06670.2	mRNA
CSPI06G06670.1	CSPI06G06670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0015031	protein transport
biological_process	GO:0043335	protein unfolding
biological_process	GO:0006457	protein folding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0043022	ribosome binding