CSPI04G24660 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G24660
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Uncharacterised protein family SERF
Location	Chr4: 22313096 .. 22314493 (+)
RNA-Seq Expression	CSPI04G24660
Synteny	CSPI04G24660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGCAGACCAAGTGTTGATAAGATGTCCCACTACGACAATCCACTCATCCAAGCTTTCTATTTTACCCATAGCGCCATGTGTTGTTTGGACGTGTCACGGCATGATCAAAAACTCTACCGTGCTCATTTCGTTGGGTTAAAAAGCAGAGGATGAGACAATTTTGAGTTTCCTTTTCCAATTTCCATGTGTGAACGAGGTGGCTAGTTTTCAATACCAGAACTTCCCCAACTACTCCATTAATTGATTGCACCCACACTACGATGCCGTTTTCCTGTCCTTTATACCATTAGTAGAATAATCTCTGTACAGTGTTTTTCCACTTTTATTCGTGCTATCATCACTGGCTCCCATTTTATCCGACGGCGAAGAAACTCCCTATATATTTGCAAAGAGTTCTTCTCTGGGGCGACGTGTGGTTGATTCAGAATTTGAAACCCTTCCTGTTGAAAAATGGGCGGAGGCAATGGCCAGAAGGCTAAAATGGCTCGGGAGAGAAATCTGGAAAAACAAAAGGCCTCAAGAGGTAATCAACCTCCCACTGTATTCTTTCAGTTTGGCTTCTGTGAGAATAATTTGCGAAGCTCACGTGATTGCTCAAAATATATGTTGTACAAACATAAATTTCATTAGTAGATGGTCTAGATCAACCAAATCTAGCTGCTTTACTAATTTAGATGTCAAGTATGATAACTGAAATGATTATTACTATGGCCTTATTTTTCTTTGTTCTTTGTGGGCTTTTGATGATTTCTCTGTATAAAGTTCAGAGTTGATTATAATTGTAATGATTTACACAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGGTAAAATTCTGAGTCTGATCTGATGTACCTAATTCGTTTCCTTGAGAGGGAGAAATATTGAATTAATAGTGACAATTACTCCTTGTTTAGCTTGTTGGTTAAAACTTGAAGTGTTCATGAAAGTGGGTTATTATGAAATTGTTGCAGTGCAAGGTATGCATGCAAACATTTATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCTGAAGCAAGGCACCCAAAATCTGACGTCTATGCTTGTTTTCCTCATCTTAAGAAATGATAATCAATCAACTTTTAGCTTTATCCTCGCTTCTCTTCTCTCTTTAGCCCAAATGCTCCTACAGGCCAAACGCCTTTCAATGTAATAACACATCCTTGTAGTAAAAAAAAAAAAATGATCTATATATTTATATGTTAATAAAGCTTCAACCTTGCTGTTTGTTTTCCTTTACTTACAAGTTACAAGTTACAAGTTACAAGAATTTTTTGTGTAAATTCGAACTTTCTGATATGCTCAACTCATTTGGCAAATGCTTATGAAACTTCTTAAATAGAATTGGCCAACGATCT

mRNA sequence

CTTTGCAGACCAAGTGTTGATAAGATGTCCCACTACGACAATCCACTCATCCAAGCTTTCTATTTTACCCATAGCGCCATGTGTTGTTTGGACGTGTCACGGCATGATCAAAAACTCTACCGTGCTCATTTCGTTGGGTTAAAAAGCAGAGGATGAGACAATTTTGAGTTTCCTTTTCCAATTTCCATGTGTGAACGAGGTGGCTAGTTTTCAATACCAGAACTTCCCCAACTACTCCATTAATTGATTGCACCCACACTACGATGCCGTTTTCCTGTCCTTTATACCATTAGTAGAATAATCTCTGTACAGTGTTTTTCCACTTTTATTCGTGCTATCATCACTGGCTCCCATTTTATCCGACGGCGAAGAAACTCCCTATATATTTGCAAAGAGTTCTTCTCTGGGGCGACGTGTGGTTGATTCAGAATTTGAAACCCTTCCTGTTGAAAAATGGGCGGAGGCAATGGCCAGAAGGCTAAAATGGCTCGGGAGAGAAATCTGGAAAAACAAAAGGCCTCAAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAAACATTTATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCTGAAGCAAGGCACCCAAAATCTGACGTCTATGCTTGTTTTCCTCATCTTAAGAAATGATAATCAATCAACTTTTAGCTTTATCCTCGCTTCTCTTCTCTCTTTAGCCCAAATGCTCCTACAGGCCAAACGCCTTTCAATGTAATAACACATCCTTGTAGTAAAAAAAAAAAAATGATCTATATATTTATATGTTAATAAAGCTTCAACCTTGCTGTTTGTTTTCCTTTACTTACAAGTTACAAGTTACAAGTTACAAGAATTTTTTGTGTAAATTCGAACTTTCTGATATGCTCAACTCATTTGGCAAATGCTTATGAAACTTCTTAAATAGAATTGGCCAACGATCT

Coding sequence (CDS)

ATGGGCGGAGGCAATGGCCAGAAGGCTAAAATGGCTCGGGAGAGAAATCTGGAAAAACAAAAGGCCTCAAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAAACATTTATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCTGAAGCAAGGCACCCAAAATCTGACGTCTATGCTTGTTTTCCTCATCTTAAGAAATGA

Protein sequence

MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVYACFPHLKK*

Homology

[Close]

BLAST of CSPI04G24660 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-29
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKAS-RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QK+ MAR +NLEK KA+ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKK 78
          EA+HPK+DV ACFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

[Close]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL
Match: A0A0A0KZW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL
Match: A0A5A7VFF4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002860 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL
Match: A0A1S3BU86 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL
Match: A0A6J1CSB6 (uncharacterized protein At2g23090-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013659 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKA+MARERN+EKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKARMARERNMEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKS++YACFPHLKK
Sbjct: 61 ARHPKSELYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL
Match: A0A6P3ZUE5 (uncharacterized protein At2g23090-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107420583 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
           MGGGNGQK+KMARERNLEKQK +RGSQLE+NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 65  MGGGNGQKSKMARERNLEKQKQNRGSQLESNKKAMTIQCKVCMQTFICTTTEVKCREHAE 124

Query: 61  ARHPKSDVYACFPHLKK 78
           A+HPKSDVYACFPHLKK
Sbjct: 125 AKHPKSDVYACFPHLKK 141

[Close]

BLAST of CSPI04G24660 vs. NCBI nr
Match: XP_004141283.1 (uncharacterized protein At2g23090 [Cucumis sativus] >KGN55255.1 hypothetical protein Csa_012030 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 6.0e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. NCBI nr
Match: XP_008452628.1 (PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 uncharacterized protein E6C27_scaffold255G001420 [Cucumis melo var. makuwa] >TYK20157.1 uncharacterized protein E5676_scaffold134G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARERNLEKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 3.0e-34
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARERNLEKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKSKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. NCBI nr
Match: XP_022143957.1 (uncharacterized protein At2g23090-like isoform X2 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 3.3e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKA+MARERN+EKQK+SRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKARMARERNMEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKS++YACFPHLKK
Sbjct: 61 ARHPKSELYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. NCBI nr
Match: KAG2719755.1 (hypothetical protein I3760_02G005000 [Carya illinoinensis])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKAKMARE+NLEKQKA++GSQLETNKKAM+IQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNLEKQKAAKGSQLETNKKAMSIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          A+HPKSDVYACFPHLKK
Sbjct: 61 AKHPKSDVYACFPHLKK 77

[Close]

BLAST of CSPI04G24660 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-30
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MGGGNGQKAKMARERNLEKQKAS-RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QK+ MAR +NLEK KA+ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKK 78
          EA+HPK+DV ACFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:

BLAST of CSPI04G24660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	3.9e-29	80.77	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of CSPI04G24660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW6	2.9e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1	[more]
A0A5A7VFF4	6.5e-35	98.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BU86	6.5e-35	98.70	uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 P...	[more]
A0A6J1CSB6	1.6e-33	93.51	uncharacterized protein At2g23090-like isoform X2 OS=Momordica charantia OX=3673...	[more]
A0A6P3ZUE5	3.5e-33	93.51	uncharacterized protein At2g23090-like isoform X1 OS=Ziziphus jujuba OX=326968 G...	[more]

BLAST of CSPI04G24660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141283.1	6.0e-35	100.00	uncharacterized protein At2g23090 [Cucumis sativus] >KGN55255.1 hypothetical pro...	[more]
XP_008452628.1	1.3e-34	98.70	PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 u...	[more]
XP_038897649.1	3.0e-34	97.40	uncharacterized protein At2g23090-like [Benincasa hispida]	[more]
XP_022143957.1	3.3e-33	93.51	uncharacterized protein At2g23090-like isoform X2 [Momordica charantia]	[more]
KAG2719755.1	4.3e-33	93.51	hypothetical protein I3760_02G005000 [Carya illinoinensis]	[more]

BLAST of CSPI04G24660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	2.8e-30	80.77	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..77 e-value: 9.9E-34 score: 117.6
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 3..35 e-value: 2.7E-7 score: 31.3
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 38..75 e-value: 1.9E-20 score: 72.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	PANTHER	PTHR33788:SF14	SUBFAMILY NOT NAMED	coord: 1..77
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..76
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G24660.1	CSPI04G24660.1	mRNA